Online research in philosophy

The general chemistry curriculum includes a prelude that consumes nearly all of the first semester and occupies the first third of the typical textbook. This necessary prelude to the main event is comparable in scope to precalculus though not broken out as a formal ‘prechemistry’ course. Atomic orbitals account for much of this prelude-to-chemistry. By tradition, orbital theory is conveyed to the student in three disjunct pieces, presented in the following illogical order: the Pauli principle, the Aufbau principle, and Hund’s (...) rule. (Often the n + l rule is tossed into the mix as well, though with no fixed place in the scheme). In the early twentieth century, as various researchers announced new insights into the atom at unpredictable intervals, no one could have been faulted for teaching orbitals in such a manner, catch-as-catch-can. A hundred years on, the vestiges of that (presumed) practice look wrong, and are indefensible. In the approach advocated here, orbitals would be taught as a single hierarchical rule-set, with the parts coherently sequenced as Aufbau–Hund–Pauli (and with Madelung’s n + l rule rehabilitated as part of Aufbau, no longer a free-floating mnemonic aid only). Logic aside, pragmatism offers its own argument for adopting this scheme: A tighter approach to Aufbau can lighten the ‘prechemistry’ burden significantly and bring the student that much sooner to chemistry itself. (shrink)

Shortly before his death, Richard Bader commented in this Journal on the dichotomy that exists within chemistry and between chemists. We believe that the dichotomy results from different goals and objectives inherent in the chemical disciplines. At one extreme are designers who synthesize new molecules with interesting properties. For these chemists, the rationale underpinning molecular synthesis is far less important than the end product—the molecules themselves. At the other extreme are the chemists who seek a fundamental understanding of molecular properties. (...) We suggest that the Quantum Theory of Atoms in Molecules, by virtue of the rich hierarchical structure inherent in the theory, offers a bridge through which to unite these two groups. However, if there is to be reconciliation, it falls to the theorists to develop “quantum mechanically” correct tools and concepts useful to the synthetic and applied chemist. (shrink)

This paper analyses Richard Bader’s ‘operational’ view of quantum mechanics and the role it plays in the the explanation of chemistry. I argue that QTAIM can partially be reconstructed as an ‘austere’ form of quantum mechanics, which is in turn committed to an eliminative concept of reduction that stems from Kemeny and Oppenheim. As a reductive theory in this sense, the theory fails. I conclude that QTAIM has both a regulatory and constructive function in the theories of chemistry.

It is argued that some elusive “entropic” characteristics of chemical bonds, e.g., bond multiplicities (orders), which connect the bonded atoms in molecules, can be probed using quantities and techniques of Information Theory (IT). This complementary perspective increases our insight and understanding of the molecular electronic structure. The specific IT tools for detecting effects of chemical bonds and predicting their entropic multiplicities in molecules are summarized. Alternative information densities, including measures of the local entropy deficiency or its displacement relative to the (...) system atomic promolecule, and the nonadditive Fisher information in the atomic orbital resolution(called contragradience ) are used to diagnose the bonding patterns in illustrative diatomic and polyatomic molecules. The elements of the orbital communication theory of the chemical bond are briefly summarized and illustrated for the simplest case of the two -orbital model. The information-cascade perspective also suggests a novel, indirect mechanism of the orbital interactions in molecular systems, through “bridges” (orbital intermediates), in addition to the familiar direct chemical bonds realized through “space”, as a result of the orbital constructive interference in the subspace of the occupied molecular orbitals. Some implications of these two sources of chemical bonds in propellanes, π-electron systems and polymers are examined. The current –density concept associated with the wave-function phase is introduced and the relevant phase -continuity equation is discussed. For the first time, the quantum generalizations of the classical measures of the information content, functionals of the probability distribution alone, are introduced to distinguish systems with the same electron density, but differing in their current(phase) composition. The corresponding information/entropy sources are identified in the associated continuity equations. (shrink)

In a recent paper in this Journal, one of us argued against placing He above Be in Mendeleiev’s system of the elements. In it the goal was to dispute the notion that in Mendeleiev’s system of the elements the location of He should in fact lie above Be, which has a very similar electronic configuration, rather than above the noble gas column. That paper was based on rather old, Hartree–Fock limit studies on the strikingly limited non-additive contributions in the He (...) 3 and He 4 systems in contrast with the much larger non-additivity obtained for the Be 3 , Be 4 and Be 5 oligomers. In a recent benchmark multireference Averaged Quadratic Coupled Cluster results on Be 2 and Be 3 we showed that the delocalized non-additive contribution comprises 94 % of the binding energy of Be 3 . Here we use this and other pertinent information (drawn from the same paper) to conclude that He may not be associated with Be in Mendeleiev’s Table, despite their quite similar spectroscopic ground states. Furthermore, we use the new results to show that the large non-additivity implies that less than 2 % of the Be 3 binding is located in each Be pair contained within the Be trimer. The rest of the interaction energy is necessarily delocalized over all three Be atoms. This might actually announce the bulk properties (i.e. “the electron gas”) that in solid-state physics explain the large electric and heat conduction for the solid Be metal. Thus, in the case of beryllium the metallic characteristics are already evident in Be 3 , a far cry from the monoatomic helium gas. (shrink)

Recently, the author of this paper and his research team have extended the orthodox quantum theory of atoms in molecules (QTAIM) to a novel paradigm called the two-component QTAIM (TC-QTAIM). This extended framework enables one to incorporate nuclear dynamics into the AIM analysis as well as performing AIM analysis of the exotic species; positronic and muonic species are a few examples. In present paper, this framework has been reviewed, providing some computational examples with particular emphasis on origins and applications, in (...) a non-technical language. The main questions, enigmas and basic ideas that finally yielded the TC-QTAIM are considered in chronological order to help the reader comprehend the intuition behind the math. Finally, it is demonstrated that the TC-QTAIM and its more refined versions are able to tackle problems inaccessible to the orthodox QTAIM. (shrink)

In this paper I discuss some consequences and manifestations of a mereology of structured wholes in chemistry, with particular reference to the concept of atoms in molecules.

The fundamental concept of structured chemical system has been introduced and analysed in this paper. This concept, as in biology but not in physics, is very important in chemistry. In fact, the main chemical concepts (molecule and compound) have been identified as systemic concepts and their use in chemical explanation can only be justified in this approach. The fundamental concept of “environment” has been considered and then the system concept in mechanics, chemistry and biology. The differences and the analogies between (...) the use of the systemic approach in these disciplines have been analyzed and correlated to the general problem of reductionism and complexity perspectives. The inanimate–animate dichotomy can be reconsidered in this new approach. Since the chemical systemic concepts of molecule and compound can be dated to the nineteenth century, chemistry can be considered the first true systemic science and its historical evolution can be a model for other sciences (such as the humanities) where the systemic concepts are important. (shrink)

Regardless or independent of any actuality or actualization and exempt from spatiotemporal and causal conditions, each individual possibility is pure. Actualism excludes the existence of individual pure possibilities, altogether or at least as existing independently of actual reality. In this paper, I demonstrate, on the grounds of my possibilist metaphysics—panenmentalism—how some of the most fascinating scientific discoveries in chemistry could not have been accomplished without relying on pure possibilities and the ways in which they relate to each other (for instance, (...) in theoretical models). The discoveries are the following: Dan Shechtman’s discovery of quasicrystals; Linus Pauling’s alpha helix; the discovery of F. Sherwood Rowland and Mario J. Molina concerning the destruction of the atmospheric ozone layer; and Neil Bartlett’s noble gas compounds. On the grounds of the analysis of these cases, actualism must fail, whereas panenmentalism gains support. (shrink)

Though causality seems to have a natural place in chemical thought, the analysis of the underlying causal concepts requires attention to two different research styles. In Part One I attempt a classification and critical analysis of several philosophical accounts of causal concepts which appear to be very diverse. I summarize this diversity which ranges from causality as displayed in regular concomitances of types of events to causality as the activity of agents. Part Two is concerned with the analysis of contrasting (...) chemical discourses, comparing the classical atomist style of Boyle, and Lavoisier and von Liebig with the later energeticist style of van’t Hoff and Hinshelwood. In detail different clusters of causal concepts can be abstracted from these discursive styles, yet they all approximate the Realist format for causal discourse. By way of summary I make an attempt to map the vernacular distinctions of Part Two onto the philosophical territory of Part One. The argument is rounded off with a brief analysis of a chemical publication of 2008. (shrink)

In this pedagogical communication after demonstrating the legitimacy for using the quantum theory of atoms in molecules (QTAIM) to non-Coulombic systems, Hookean H2 +/H3 2+ species are used for AIM analysis. In these systems, in contrast to their Coulombic counterparts, electron density is atom-like and instead of expected two/three topological atoms, just a single topological atom emerges. This observation is used to demonstrate that what is really “seen” by the topological analysis of electron densities is the clustering of electrons. The (...) very trait of monotonic decay of electron density around the “centers” of clustering guarantees the appearance of topological atoms as basin of attraction of the gradient vector field of the electron density. Although observations with Hookean molecules may seem disappointing at first glance, a careful reasoning points to the fact that the QTAIM methodology is extendable to novel domains, by a knowledge of the morphology of underlying densities, beyond the typical Coulombic systems. (shrink)

This study discusses the relationship between Green Chemistry and Environmental Sustainability as expressed in textbooks and articles on Green Chemistry authored by their promoters. It was found that although the Brundtland concept of Sustainable Development/Sustainability has been mentioned often by green chemists, a full analysis of that relationship was almost never attempted. In particular, green chemists have paid scarce attention to the importance of The Second Law of thermodynamics on Environmental Sustainability and the consequences of the limitations it imposes on (...) Green Chemistry, which are discussed in this paper. (shrink)

Editorial 40 Content Type Journal Article Category Editorial Pages 1-2 DOI 10.1007/s10698-012-9148-y Authors Eric R. Scerri, Department of Chemistry and Biochemistry, UCLA, Los Angeles, CA 90095, USA Journal Foundations of Chemistry Online ISSN 1572-8463 Print ISSN 1386-4238.