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Evolutionary Biology, Miscellaneous

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  1. Denis Alexander & Ronald L. Numbers (2010). Biology and Ideology From Descartes to Dawkins. The University of Chicago Press.
    An accessible survey, this collection will enlighten historians of science, their students, practicing scientists, and anyone interested in the relationship ...
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  2. R. Arp (2006). The Environments of Our Hominin Ancestors, Tool-Usage, and Scenario Visualization. Biology and Philosophy 21 (1).
    In this paper, I give an account of how our hominin ancestors evolved a conscious ability I call scenario visualization that enabled them to manufacture novel tools so as to survive and flourish in the ever-changing and complex environments in which they lived. I first present the ideas and arguments put forward by evolutionary psychologists that the mind evolved certain mental capacities as adaptive responses to environmental pressures. Specifically, Steven Mithen thinks that the mind has evolved cognitive fluidity, viz., an (...)
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  3. Bradley Shavit Artson (2011). Co-Evolving: Judaism and Biology. Zygon 46 (2):429-445.
    Abstract. Biology has been able to systematize and order its vast information through the theory of evolution, offering the possibility of a more engaged dialogue and possible integration with religious insights and emotions. Using Judaism as a focus, this essay examines ways that contemporary evolutionary theory offers room for balancing freedom and constraint, serendipity and intentionality in ways fruitful to Jewish thought and expression. This essay then looks at a productive integration of Judaism and biology in the examples of co-evolution, (...)
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  4. Mohan Matthen (2011). Review of Daniel W. McShea and Robert N. Brandon, Biology's First Law. [REVIEW] Notre Dame Philosophical Reviews 2011 (1).
    McShea and Brandon propose that in the absence of constraint, biological diversity increases spontaneously. While heuristically useful, the thesis is unclear and of dubious empirical validity. The authors have no natural way to distinguish entropic decrease of diversity from the kind of increase that they are interested in. They make unsupported claims about how to explain dramatic increases of diversity and increases of functional complexity.
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Adaptationism
  1. Jeremy C. Ahouse (1998). The Tragedy of a Priori Selectionism: Dennett and Gould on Adaptationism. Biology and Philosophy 13 (3).
    In his recent book on Darwinism, Daniel Dennett has offered up a species of a priori selectionism that he calls algorithmic. He used this view to challenge a number of positions advocated by Stephen J. Gould. I examine his algorithmic conception, review his unqualified enthusiasm for the a priori selectionist position, challenge Dennett's main metaphors (cranes vs. skyhooks and a design space), examine ways in which his position has lead him to misunderstand or misrepresent Gould (spandrels, exaptation, punctuated equilibrium, contingency (...)
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  2. Ron Amundson (1994). Two Concepts of Constraint: Adaptationism and the Challenge From Developmental Biology. Philosophy of Science 61 (4):556-578.
    The so-called "adaptationism" of mainstream evolutionary biology has been criticized from a variety of sources. One, which has received relatively little philosophical attention, is developmental biology. Developmental constraints are said to be neglected by adaptationists. This paper explores the divergent methodological and explanatory interests that separate mainstream evolutionary biology from its embryological and developmental critics. It will focus on the concept of constraint itself; even this central concept is understood differently by the two sides of the dispute.
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  3. Paul W. Andrews, Steven W. Gangestad & Dan Matthews (2002). Adaptationism, Exaptationism, and Evolutionary Behavioral Science. Behavioral and Brain Sciences 25 (4):534-547.
    In our target article, we discussed the standards of evidence that could be used to identify adaptations, and argued that building an empirical case that certain features of a trait are best explained by exaptation, spandrel, or constraint requires the consideration, testing, and rejection of adaptationist hypotheses. We are grateful to the 31 commentators for their thoughtful insights. They raised important issues, including the meaning of “exaptation”; whether Gould and Lewontin's critique of adaptationism was primarily epistemological or ontological; the necessity, (...)
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  4. Paul W. Andrews, Steven W. Gangestad & Dan Matthews (2002). Adaptationism – How to Carry Out an Exaptationist Program. Behavioral and Brain Sciences 25 (4):489-504.
    1 Adaptationism is a research strategy that seeks to identify adaptations and the specific selective forces that drove their evolution in past environments. Since the mid-1970s, paleontologist Stephen J. Gould and geneticist Richard Lewontin have been critical of adaptationism, especially as applied toward understanding human behavior and cognition. Perhaps the most prominent criticism they made was that adaptationist explanations were analogous to Rudyard Kipling's Just So Stories (outlandish explanations for questions such as how the elephant got its trunk). Since storytelling (...)
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  5. Scott Atran (2005). Adaptationism for Human Cognition: Strong, Spurious, or Weak? Mind and Language 20 (1):39-67.
    Strong adaptationists explore complex organic design as taskspecific adaptations to ancestral environments. This strategy seems best when there is evidence of homology. Weak adaptationists don't assume that complex organic (including cognitive and linguistic) functioning necessarily or primarily represents taskspecific adaptation. This approach to cognition resembles physicists' attempts to deductively explain the most facts with fewest hypotheses. For certain domainspecific competencies (folkbiology) strong adaptationism is useful but not necessary to research. With grouplevel belief systems (religion) strong adaptationism degenerates into spurious notions (...)
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  6. Scott Atran (2002). Modest Adaptationism: Muddling Through Cognition and Language. Behavioral and Brain Sciences 25 (4):504-506.
    Strong adaptationists would explain complex organic designs as specific adaptations to particular ancestral environments. Weak adaptationists don't assume that complex organic functioning represents evolutionary design in the sense of niche-specific adaptation. For some domain-specific competencies (folkbiology) strong adaptationism is useful, not necessary. With group-level belief systems (religion), strong adaptationism can become spurious pseudo-adaptationism. In other cases (language), weak adaptationism proves productive.
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  7. Gillian Barker (2008). Biological Levers and Extended Adaptationism. Biology and Philosophy 23 (1).
    Two critiques of simple adaptationism are distinguished: anti-adaptationism and extended adaptationism. Adaptationists and anti-adaptationists share the presumption that an evolutionary explanation should identify the dominant simple cause of the evolutionary outcome to be explained. A consideration of extended-adaptationist models such as coevolution, niche construction and extended phenotypes reveals the inappropriateness of this presumption in explaining the evolution of certain important kinds of features—those that play particular roles in the regulation of organic processes, especially behavior. These biological or behavioral ‘levers’ are (...)
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  8. Ingo Brigandt (forthcoming). From Developmental Constraint to Evolvability: How Concepts Figure in Explanation and Disciplinary Identity. In Alan C. Love (ed.), Conceptual Change in Biology: Scientific and Philosophical Perspectives on Evolution and Development. Springer.
    The concept of developmental constraint was at the heart of developmental approaches to evolution of the 1980s. While this idea was widely used to criticize neo-Darwinian evolutionary theory, critique does not yield an alternative framework that offers evolutionary explanations. In current Evo-devo the concept of constraint is of minor importance, whereas notions as evolvability are at the center of attention. The latter clearly defines an explanatory agenda for evolutionary research, so that one could view the historical shift from ‘developmental constraint’ (...)
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  9. Peter Carruthers, Stephen Laurence & Stephen P. Stich (2005). The Innate Mind. Oxford University Press.
    This is the first volume of a projected three-volume set on the subject of innateness. The extent to which the mind is innate is one of the central questions in the human sciences, with important implications for many surrounding debates. By bringing together the top nativist scholars in philosophy, psychology, and allied disciplines these volumes provide a comprehensive assessment of nativist thought and a definitive reference point for future nativist inquiry. The Innate Mind: Structure and Content, concerns the fundamental architecture (...)
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  10. Aurelio José Figueredo, Mark J. Landau & Jon A. Sefcek (2004). Apes and Angels: Adaptationism Versus Panglossianism. Behavioral and Brain Sciences 27 (3):334-335.
    The “straw man” prior expectation of the dominant social psychology paradigm is that humans should behave with perfect rationality and high ethical standards. The more modest claim of evolutionary psychologists is that humans have evolved specific adaptations for adaptive problems that were reliably present in the ancestral environment. Outside that restricted range of problems, one should not expect optimal behavior.
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  11. Patrick Forber (2009). Introduction: A Primer on Adaptationism. Biology and Philosophy 24 (2).
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  12. Peter Godfrey-Smith, Three Kinds of Adaptationism.
    Debate about adaptationism in biology continues, in part because within “the” problem of assessing adaptationism, three distinct problems are mixed together. The three problems concern the assessment of three distinct adaptationist positions, each of which asserts the central importance of adaptation and natural selection to the study of evolution, but conceives this importance in a different way. As there are three kinds of adaptationism, there are three distinct "anti-adaptationist" positions as well. Or putting it more formally, there are three different (...)
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  13. Peter Godfrey-Smith (1999). Adaptationism and the Power of Selection. Biology and Philosophy 14 (2).
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  14. Brian Haig & Russil Durrant (2002). Adaptationism and Inference to the Best Explanation. Behavioral and Brain Sciences 25 (4):520-521.
    Andrews et al. effectively argue that, despite prominent criticism, adaptationism can be a viable research strategy. We agree. In our complementary commentary, we discuss the neglected method of inference to the best explanation and argue that it is a valuable addition to the adaptationist's methodological practice.
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  15. Simon M. Huttegger (2010). Generic Properties of Evolutionary Games and Adaptationism. Journal of Philosophy 107 (2).
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  16. Jonathan Kaplan (2008). Economic Rationality and Explaining Human Behavior: An Adaptationist Program? International Journal of Interdisciplinary Social Sciences 3 (7):79-94.
    Attempts to explain human behavior that appeal to economic rationality share many of the same ontological as- sumptions and methodological practices that the so-called ‘adaptationist program’ in biology was criticized for. This program in biology was largely abandoned by biologists as poorly motivated, and replaced with the active testing of both adaptive and non-adaptive hypotheses regarding the spread and maintenance of traits in populations. This development was largely welcome by the biological <span class='Hi'>community</span>, despite having required the development of new (...)
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  17. David Kirsh (1996). Adapting the Environment Instead of Oneself. Adaptive Behavior 4 (3-4):415-452.
    This paper examines some of the methods animals and humans have of adapting their environment. Because there are limits on how many different tasks a creature can be designed to do well in, creatures with the capacity to redesign their environments have an adaptive advantage over those who can only passively adapt to existing environmental structures. To clarify environmental redesign I rely on the formal notion of a task environment as a directed graph where the nodes are states and the (...)
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  18. Tim Lewens (2009). Seven Types of Adaptationism. Biology and Philosophy 24 (2).
    Godfrey-Smith ( 2001 ) has distinguished three types of adaptationism. This article builds on his analysis, and revises it in places, by distinguishing seven varieties of adaptationism. This taxonomy allows us to clarify what is at stake in debates over adaptationism, and it also helps to cement the importance of Gould and Lewontin’s ‘Spandrels’ essay. Some adaptationists have suggested that their essay does not offer any coherent alternative to the adaptationist programme: it consists only in an exhortation to test adaptationist (...)
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  19. Tim Lewens (2002). Adaptationism and Engineering. Biology and Philosophy 17 (1).
    The rights and wrongs of adaptationism areoften discussed by appeal to what I call theartefact model. Anti-adaptationistscomplain that the use of optimality modelling,reverse engineering and other techniques areindicative of a mistaken and outmoded beliefthat organisms are like well-designedartefacts. Adaptationists (e.g. Dennett 1995)respond with the assertion that viewingorganisms as though they were well designed isa fruitful, perhaps necessary research strategyin evolutionary biology. Anti-adaptationistsare right when they say that techniques likereverse engineering are liable to mislead. This fact does not undermine the artefact (...)
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  20. Roberta L. Millstein (2007). Hsp90-Induced Evolution: Adaptationist, Neutralist, and Developmentalist Scenarios. Biological Theory: Integrating Development, Evolution and Cognition 2 (4):376-386.
    Recent work on the heat-shock protein Hsp90 by Rutherford and Lindquist (1998) has been included among the pieces of evidence taken to show the essential role of developmental processes in evolution; Hsp90 acts as a buffer against phenotypic variation, allowing genotypic variation to build. When the buffering capacity of Hsp90 is altered (e.g., in nature, by mutation or environmental stress), the genetic variation is "revealed," manifesting itself as phenotypic variation. This phenomenon raises questions about the genetic variation before and after (...)
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  21. S. Okasha (2003). Fodor on Cognition, Modularity, and Adaptationism. Philosophy of Science 70 (1):68-88.
    This paper critically examines Jerry Fodor's latest attacks on evolutionary psychology. Contra Leda Cosmides and John Tooby, Fodor argues (i) there is no reason to think that human cognition is a Darwinian adaptation in the first place, and (ii) there is no valid inference from adaptationism about the mind to massive modularity. However, Fodor maintains (iii) that there is a valid inference in the converse direction, from modularity to adaptationism, but (iv) that the language module is an exception to the (...)
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  22. Steven Hecht Orzack (2010). Adaptationism. Stanford Encyclopedia of Philosophy.
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  23. Angela Potochnik (2009). Optimality Modeling in a Suboptimal World. Biology and Philosophy 24 (2).
    The fate of optimality modeling is typically linked to that of adaptationism: the two are thought to stand or fall together (Gould and Lewontin, Proc Relig Soc Lond 205:581–598, 1979; Orzack and Sober, Am Nat 143(3):361–380, 1994). I argue here that this is mistaken. The debate over adaptationism has tended to focus on one particular use of optimality models, which I refer to here as their strong use. The strong use of an optimality model involves the claim that selection is (...)
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  24. Beth Preston (1998). Why is a Wing Like a Spoon? A Pluralist Theory of Function. Journal of Philosophy 95 (5):215-254.
    Function theorists routinely speculate that a viable function theory will be equally applicable to biological traits and artifacts. However, artifact function has received only the most cursory scrutiny in its own right. Closer scrutiny reveals that only a pluralist theory comprising two distinct notions of function--proper function and system function--will serve as an adequate general theory. The first section describes these two notions of function. The second section shows why both notions are necessary, by showing that attempts to do away (...)
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  25. David Resnik (1996). Adaptationism: Hypothesis or Heuristic? Biology and Philosophy 12 (1).
    Elliott Sober (1987, 1993) and Orzack and Sober (forthcoming) argue that adaptationism is a very general hypothesis that can be tested by testing various particular hypotheses that invoke natural selection to explain the presence of traits in populations of organisms. In this paper, I challenge Sobers claim that adaptationism is an hypothesis and I argue that it is best viewed as a heuristic (or research strategy). Biologists would still have good reasons for employing this research strategy even if it turns (...)
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  26. Eric Reuland (2008). On Language and Evolution: Why Neo-Adaptationism Fails. Behavioral and Brain Sciences 31 (5):531-532.
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  27. Robert C. Richardson (2003). Adaptationism, Adaptation, and Optimality. Biology and Philosophy 18 (5).
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  28. Michael Ruse (1972). Biological Adaptation. Philosophy of Science 39 (4):525-528.
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  29. Roger Sansom (2003). Constraining the Adaptationism Debate. Biology and Philosophy 18 (4).
    This contribution to the adaptationism debate elaborates the nature of constraints and their importance in evolutionary explanation and argues that the adaptationism debate should be limited to the issue of how to privilege causes in evolutionary explanation. I argue that adaptationist explanations are deeply conceptually dependent on developmental constraints, and explanations that appeal to constraints are dependant on the results of natural selection. I suggest these explanations should be integrated into the framework of historical causal explanation. Each strategy explicitly appeals (...)
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  30. Chandra Sekhar Sripada (2008). Adaptationism, Culture, and the Malleability of Human Nature. In Peter Caruthers, Stephen Laurence & Stephen Stich (eds.), The Innate Mind, Volume 3. Oxford University Press.
    It is often thought that if an adaptationist explanation of some behavioural phenomenon is true, then this fact shows that a culturist explanation of the very same phenomenon is false, or else the adaptationist explanation preempts or crowds out the culturist explanation in some way. This chapter shows why this so-called competition thesis is misguided. Two evolutionary models are identified — the Information Learning Model and the Strategic Learning Model — which show that adaptationist reasoning can help explain why cultural (...)
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  31. Wim J. Steen (1983). Methodological Problems in Evolutionary Biology II. Appraisal of Arguments Against Adaptationism. Acta Biotheoretica 32 (3).
    Methodological analysis shows that the concepts of fitness and adaptation are more complex than the literature suggests. Various arguments against adaptationism are inadequate since they are couched in terms of unduly simplistic notions.
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  32. James Swanson, Robert Moyzis, John Fossella, Jin Fan & Michael I. Posner (2002). Adaptationism and Molecular Biology: An Example Based on ADHD. Behavioral and Brain Sciences 25 (4):530-531.
    Rather than starting with traits and speculating whether selective forces drove evolution in past environments, we propose starting with a candidate gene associated with a trait and testing first for patterns of selection at the DNA level. This can provide limitations on the number of traits to be evaluated subsequently by adaptationism as described by Andrews et al.
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  33. Alfonso Troisi (2006). Adaptationism and Medicalization: The Scylla and Charybdis of Darwinian Psychiatry. Behavioral and Brain Sciences 29 (4):422-423.
    The target article shows that the application of the evolutionary theory to psychopathology should not necessarily consist in finding hidden adaptive benefits for each psychiatric syndrome. However, in rejecting lax adaptationism, Darwinian psychiatrists should not forget that the search for adaptive behavioral polymorphisms can be a powerful antidote against the normative attitude of mainstream psychiatry and its growing tendency to medicalize human diversity. (Published Online November 9 2006).
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  34. Francisco Vergara-Silva & Rasmus Grønfeldt Winther (2009). Editorial: Systematics, Darwinism, and the Philosophy of Science. Acta Biotheoretica 57:1-3.
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  35. Jon F. Wilkins & Peter Godfrey-Smith (2009). Adaptationism and the Adaptive Landscape. Biology and Philosophy 24 (2).
    Debates over adaptationism can be clarified and partially resolved by careful consideration of the ‘grain’ at which evolutionary processes are described. The framework of ‘adaptive landscapes’ can be used to illustrate and facilitate this investigation. We argue that natural selection may have special status at an intermediate grain of analysis of evolutionary processes. The cases of sickle-cell disease and genomic imprinting are used as case studies.
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Darwinism
  1. Matthew J. Brown, A Centennial Retrospective of John Dewey's "The Influence of Darwinism on Philosophy".
    n 1909, the 50th anniversary of both the publication of Origin of the Species and his own birth, John Dewey published "The Influence of Darwin on Philosophy." This optimistic essay saw Darwin's advance not only as one of empirical or theoretical biology, but a logical and conceptual revolution that would shake every corner of philosophy. Dewey tells us less about the influence that Darwin exerted over philosophy over the past 50 years and instead prophesied the influence it would (or should) (...)
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  2. Joachim L. Dagg (2011). Exploring Mouse Trap History. Evolution Education and Outreach 4 (3):397-414.
    Since intelligent design (ID) advocates claimed the ubiquitous mouse trap as an example of systems that cannot have evolved, mouse trap history is doubly relevant to studying material culture. On the one hand, debunking ID claims about mouse traps and, by implication, also about other irreducibly complex systems has a high educational value. On the other hand, a case study of mouse trap history may contribute insights to the academic discussion about material culture evolution. Michael Behe argued that mouse traps (...)
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  3. Christopher Eliot (2009). Darwinism and its Discontents. By Michael Ruse. [REVIEW] Metaphilosophy 40 (5):702-710.
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  4. Yiftach J. H. Fehige (2007). The Meaning of the World’s Meaning. [REVIEW] EMBO 8 (5).
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  5. Peter Godfrey-Smith, What Darwinism Explains.
    Did Darwin really do what Kant said was impossible, and serve as a Newton for the biological world? In assessing this question we need to look at both the structure of evolutionary theory and the structure of our explanation-seeking minds. The short answer to the question is yes. Both underestimates and overestimates of the significance of Darwinian explanations derive from psychological habits which may stem from our own evolutionary history.
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  6. Charles H. Pence, Charles Darwin and Sir John F. W. Herschel: Nineteenth-Century Science and its Methodology.
    In this essay, I review the relationship between Charles Darwin's methodology and the philosophy of science of Sir John F. W. Herschel. Darwin's exposure to Herschel's philosophy was, I argue, significant. Further, when we construct an appropriate reading of Herschel's philosophy of science (a surprisingly difficult feat), we can see that Darwin's three-part argument in the Origin is crafted in order to strictly adhere to Herschel's methodological guidelines.
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  7. Charles H. Pence (2011). Nietzsche’s Aesthetic Critique of Darwin. History and Philosophy of the Life Sciences 33 (2):165-190.
    Despite his position as one of the first philosophers to write in the “post- Darwinian” world, the critique of Darwin by Friedrich Nietzsche is often ignored for a host of unsatisfactory reasons. I argue that Nietzsche’s critique of Darwin is important to the study of both Nietzsche’s and Darwin’s impact on philosophy. Further, I show that the central claims of Nietzsche’s critique have been broadly misunderstood. I then present a new reading of Nietzsche’s core criticism of Darwin. An important part (...)
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  8. Pablo Razeto-Barry & Ramiro Frick (2011). Probabilistic Causation and the Explanatory Role of Natural Selection. Studies in History and Philosophy of Science Part C 42 (3):344-355.
    The explanatory role of natural selection is one of the long-term debates in evolutionary biology. Nevertheless, the consensus has been slippery because conceptual confusions and the absence of a unified, formal causal model that integrates different explanatory scopes of natural selection. In this study we attempt to examine two questions: (i) What can the theory of natural selection explain? and (ii) Is there a causal or explanatory model that integrates all natural selection explananda? For the first question, we argue that (...)
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  9. Francisco Vergara-Silva & Rasmus Grønfeldt Winther (2009). Editorial: Systematics, Darwinism, and the Philosophy of Science. Acta Biotheoretica 57:1-3.
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  10. John S. Wilkins & Gareth J. Nelson (2008). Trémaux on Species: A Theory of Allopatric Speciation (and Punctuated Equilibrium) Before Wagner. History and Philosophy of the Life Sciences 30 (1):179-206.
    Pierre Trémaux’s 1865 ideas on speciation have been unjustly derided following his acceptance by Marx and rejection by Engels, and almost nobody has read his ideas in a charitable light. Here we offer an interpretation based on translating the term sol as “habitat”, in order to show that Trémaux proposed a theory of allopatric speciation before Wagner and a punctuated equilibrium theory before Gould and Eldredge, and translate the relevant discussion from the French. We believe he may have influenced Darwin’s (...)
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  11. Rasmus Grønfeldt Winther (2011). Darwin's Pluralism, Then and Now. [REVIEW] Metascience 21 (1):157-161.
    Darwin’s pluralism, then and now Content Type Journal Article Pages 1-5 DOI 10.1007/s11016-011-9578-5 Authors Rasmus Grønfeldt Winther, Philosophy Department, University of California, Santa Cruz, 1156 High St., Santa Cruz, CA 95064, USA Journal Metascience Online ISSN 1467-9981 Print ISSN 0815-0796.
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  12. Rasmus Grønfeldt Winther (2001). August Weismann on Germ-Plasm Variation. Journal of the History of Biology 34 (3):517-555.
    August Weismann is famous for having argued against the inheritance of acquired characters. However, an analysis of his work indicates that Weismann always held that changes in external conditions, acting during development, were the necessary causes of variation in the hereditary material. For much of his career he held that acquired germ-plasm variation was inherited. An irony, which is in tension with much of the standard twentieth-century history of biology, thus exists – Weismann was not a Weismannian. I distinguish three (...)
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  13. Rasmus Grønfeldt Winther (2000). Darwin on Variation and Heredity. Journal of the History of Biology 33 (3):425-455.
    Darwin’s ideas on variation, heredity, and development differ significantly from twentieth-century views. First, Darwin held that environmental changes, acting either on the reproductive organs or the body, were necessary to generate variation. Second, heredity was a developmental, not a transmissional, process; variation was a change in the developmental process of change. An analysis of Darwin’s elaboration and modification of these two positions from his early notebooks (1836–1844) to the last edition of the /Variation of Animals and Plants Under Domestication/ (1875) (...)
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Epistemology of Evolution
  1. Paul E. Griffiths & John S. Wilkins (forthcoming). When Do Evolutionary Explanations of Belief Debunk Belief? In Darwin in the 21st Century.
    Ever since Darwin people have worried about the sceptical implications of evolution. If our minds are products of evolution like those of other animals, why suppose that the beliefs they produce are true, rather than merely useful? In this chapter we apply this argument to beliefs in three different domains: morality, religion, and science. We identify replies to evolutionary scepticism that work in some domains but not in others. The simplest reply to evolutionary scepticism is that the truth of beliefs (...)
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  2. Chris Haufe (2008). Perverse Engineering. Philosophy of Science 75 (4):437-446.
    Evolutionary psychologists, among others, have used a method called “reverse engineering” to uncover ( a ) whether a trait was selected for, and ( b ) if so, why that trait was selected for. In this paper I argue that reverse engineering cannot deliver on either ( a ) or ( b ), and tends to pervert, rather than enhance, our knowledge of natural history. In particular, I expose as false a fundamental assumption of reverse engineering—namely, that all traits selected (...)
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Evolutionary Progress
  1. Kai Hahlweg (1991). On the Notion of Evolutionary Progress. Philosophy of Science 58 (3):436-451.
    In this paper, I develop a naturalistic conception of evolutionary progress. I argue that the Waddingtonian notion of adaptability can be embedded meaningfully into a framework which views living things as nonequilibrium structures. This thermodynamic interpretation places great emphasis on the dynamics of environmental change, whereas the classical conceptions are based on equilibrium conceptions of the evolutionary process. What improves in evolution is the ability of living things to stay alive in increasingly heterogeneous environments.
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  2. Aharon Kantorovich & Yuval Ne'eman (1989). Serendipity as a Source of Evolutionary Progress in Science. Studies in History and Philosophy of Science Part A 20 (4):505-529.
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  3. Gregory Radick (2000). Two Explanations of Evolutionary Progress. Biology and Philosophy 15 (4).
    Natural selection explains how living forms are fitted to theirconditions of life. Darwin argued that selection also explains what hecalled the gradual advancement of the organisation, i.e.evolutionary progress. Present-day selectionists disagree. In theirview, it is happenstance that sustains conditions favorable to progress,and therefore happenstance, not selection, that explains progress. Iargue that the disagreement here turns not on whether there exists aselection-based condition bias – a belief now attributed to Darwin – but on whether there needs to be such a bias (...)
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  4. T. Shanahan (2001). Methodological and Contextual Factors in the Dawkins/Gould Dispute Over Evolutionary Progress. Studies in History and Philosophy of Science Part C 32 (1):127-151.
    Biologists Richard Dawkins and Stephen Jay Gould have recently extended their decades-old disagreements about evolution to the issue of the nature and reality of evolutionary progress. According to Gould, 'progress' is a noxious notion that deserves to be expunged from evolutionary biology. In Dawkins' view, on the other hand, progress is one of the most important, pervasive and inevitable aspects of evolution. Simple appeals to 'the evidence' are clearly insufficient to resolve this disagreement, since it is precisely the interpretation of (...)
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  5. Henry L. Zaltsman (2009). Toward a Theory of Progressive Evolution (Large-Scale Stages of Evolutionary Progress). World Futures 65 (3):145 – 165.
    Here I discuss the basic elements, major stages, and completion of progressive evolution. The cosmic world of self-realization is based on extensive self-development within a closed contour: temporal counter-transitions of spatial counter-elements (energy bonds and media and, basically, substance structures) form of local worlds within it through evolution of informational structures. The organic world of reproduction develops through the open informational path: the initial substance, through energy exchange and metabolism, reproduces similar substance; the latter interacts with the environment and, subsequently, (...)
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Fitness
  1. Marshall Abrams (2009). Fitness “Kinematics”: Biological Function, Altruism, and Organism–Environment Development. Biology and Philosophy 24 (4).
    It’s recently been argued that biological fitness can’t change over the course of an organism’s life as a result of organisms’ behaviors. However, some characterizations of biological function and biological altruism tacitly or explicitly assume that an effect of a trait can change an organism’s fitness. In the first part of the paper, I explain that the core idea of changing fitness can be understood in terms of conditional probabilities defined over sequences of events in an organism’s life. The result (...)
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  2. Marshall Abrams (2009). The Unity of Fitness. Philosophy of Science 76 (5).
    It has been argued that biological fitness cannot be defined as expected number of offspring in all contexts. Some authors argue that fitness therefore merely satisfies a common schema or that no unified mathematical characterization of fitness is possible. I argue that comparative fitness must be relativized to an evolutionary effect; thus relativized, fitness can be given a unitary mathematical characterization in terms of probabilities of producing offspring and other effects. Such fitnesses will sometimes be defined in terms of probabilities (...)
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  3. Marshall Abrams (2009). What Determines Biological Fitness? The Problem of the Reference Environment. Synthese 166 (1):21 - 40.
    Organisms' environments are thought to play a fundamental role in determining their fitness and hence in natural selection. Existing intuitive conceptions of environment are sufficient for biological practice. I argue, however, that attempts to produce a general characterization of fitness and natural selection are incomplete without the help of general conceptions of what conditions are included in the environment. Thus there is a "problem of the reference environment"—more particularly, problems of specifying principles which pick out those environmental conditions which determine (...)
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  4. Marshall Abrams (2007). Fitness and Propensity's Annulment? Biology and Philosophy 22 (1).
    Recent debate on the nature of probabilities in evolutionary biology has focused largely on the propensity interpretation of fitness (PIF), which defines fitness in terms of a conception of probability known as “propensity”. However, proponents of this conception of fitness have misconceived the role of probability in the constitution of fitness. First, discussions of probability and fitness have almost always focused on organism effect probability, the probability that an organism and its environment cause effects. I argue that much of the (...)
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  5. Andre Ariew (2009). What Fitness Can't Be. Erkenntnis 71 (3):289 - 301.
    Recently advocates of the propensity interpretation of fitness have turned critics. To accommodate examples from the population genetics literature they conclude that fitness is better defined broadly as a family of propensities rather than the propensity to contribute descendants to some future generation. We argue that the propensity theorists have misunderstood the deeper ramifications of the examples they cite. These examples demonstrate why there are factors outside of propensities that determine fitness. We go on to argue for the more general (...)
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  6. Andre Ariew (2002). Two Ways of Thinking About Fitness and Natural Selection. The Journal of Philosophy 99 (2).
    ÒThe concept of fitness is,Ó Philip Kitcher says, Òimportant both to informal presentations of evolutionary theory and to the mathematical formulations of [population genetics].Ó1 He is absolutely right. The difficulty is to harmonize these very different ways of understanding its role. In this paper, we examine how natural selection relates to the other explanatory factors invoked by evolutionary theory. We argue that the Òinformal presentationsÓ to which Kitcher alludes give an incoherent account of the relation. A more appropriate model is (...)
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  7. André Ariew & R. C. Lewontin (2004). The Confusions of Fitness. British Journal for the Philosophy of Science 55 (2):347-363.
    The central point of this essay is to demonstrate the incommensurability of ‘Darwinian fitness’ with the numeric values associated with reproductive rates used in population genetics. While sometimes both are called ‘fitness’, they are distinct concepts coming from distinct explanatory schemes. Further, we try to outline a possible answer to the following question: from the natural properties of organisms and a knowledge of their environment, can we construct an algorithm for a particular kind of organismic life-history pattern that itself will (...)
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  8. Frédéric Bouchard (2008). Causal Processes, Fitness, and the Differential Persistence of Lineages. Philosophy of Science 75 (5):560-570.
    Ecological fitness has been suggested to provide a unifying definition of fitness. However, a metric for this notion of fitness was in most cases unavailable except by proxy with differential reproductive success. In this article, I show how differential persistence of lineages can be used as a way to assess ecological fitness. This view is inspired by a better understanding of the evolution of some clonal plants, colonial organisms, and ecosystems. Differential persistence shows the limitation of an ensemblist noncausal understanding (...)
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  9. Frédéric Bouchard & Alex Rosenberg (2004). Fitness, Probability and the Principles of Natural Selection. British Journal for the Philosophy of Science 55 (4):693-712.
    We argue that a fashionable interpretation of the theory of natural selection as a claim exclusively about populations is mistaken. The interpretation rests on adopting an analysis of fitness as a probabilistic propensity which cannot be substantiated, draws parallels with thermodynamics which are without foundations, and fails to do justice to the fundamental distinction between drift and selection. This distinction requires a notion of fitness as a pairwise comparison between individuals taken two at a time, and so vitiates the interpretation (...)
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  10. Henry C. Byerly & Richard E. Michod (1991). Fitness and Evolutionary Explanation. Biology and Philosophy 6 (1).
    Recent philosophical discussions have failed to clarify the roles of the concept fitness in evolutionary theory. Neither the propensity interpretation of fitness nor the construal of fitness as a primitive theoretical term succeed in explicating the empirical content and explanatory power of the theory of natural selection. By appealing to the structure of simple mathematical models of natural selection, we separate out different contrasts which have tended to confuse discussions of fitness: the distinction between what fitness is defined as versus (...)
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  11. Paul E. Griffiths (1993). Functional Analysis and Proper Functions. British Journal for the Philosophy of Science 44 (3):409-422.
    The etiological approach to ‘proper functions’ in biology can be strengthened by relating it to Robert Cummins' general treatment of function ascription. The proper functions of a biological trait are the functions it is assigned in a Cummins-style functional explanation of the fitness of ancestors. These functions figure in selective explanations of the trait. It is also argued that some recent etiological theories include inaccurate accounts of selective explanation in biology. Finally, a generalization of the notion of selective explanation allows (...)
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  12. Jonathan Kaplan (2008). The End of the Adaptive Landscape Metaphor? Biology and Philosophy 23 (5).
    The concepts of adaptive/fitness landscapes and adaptive peaks are a central part of much of contemporary evolutionary biology; the concepts are introduced in introductory texts, developed in more detail in graduate-level treatments, and are used extensively in papers published in the major journals in the field. The appeal of visualizing the process of evolution in terms of the movement of populations on such landscapes is very strong; as one becomes familiar with the metaphor, one often develops the feeling that it (...)
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  13. Costas B. Krimbas (2004). On Fitness. Biology and Philosophy 19 (2):185-203.
    The concept of fitness, central to population genetics and to the synthetic theory of evolution, is discussed. After a historical introduction on the origin of this concept, the current meaning of it in population genetics is examined: a cause of the selective process and its quantification. Several difficulties arise for its exact definition. Three adequacy criteria for such a definition are formulated. It is shown that it is impossible to formulate an adequate definition of fitness respecting these criteria. The propensity (...)
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  14. James Maclaurin, Fitness: Philosophical Problems. Encyclopedia of Life Sciences.
    A philosophical discussion of conceptual and theoretical issues raised by the scientific use of the term ‘fitness’ to describe a property of evolving systems.
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  15. Susan K. Mills & John H. Beatty (1979). The Propensity Interpretation of Fitness. Philosophy of Science 46 (2):263-286.
    The concept of "fitness" is a notion of central importance to evolutionary theory. Yet the interpretation of this concept and its role in explanations of evolutionary phenomena have remained obscure. We provide a propensity interpretation of fitness, which we argue captures the intended reference of this term as it is used by evolutionary theorists. Using the propensity interpretation of fitness, we provide a Hempelian reconstruction of explanations of evolutionary phenomena, and we show why charges of circularity which have been levelled (...)
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  16. Jun Otsuka, Trin Turner, Colin Allen & Elisabeth Lloyd (2011). Why the Causal View of Fitness Survives. Philosophy of Science.
    We critically examine Denis Walsh’s latest attack on the causalist view of fitness. Relying on Judea Pearl’s Sure-Thing Principle and geneticist John Gillespie’s model for fitness, Walsh has argued that the causal interpretation of fitness results in a reductio. We show that his conclusion only follows from misuse of the models, that is, (1) the disregard of the real biological bearing of the population-size parameter in Gillespie’s model and (2) the confusion of the distinction between ordinary probability and Pearl’s causal (...)
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  17. Alex Rosenberg (1991). Adequacy Criteria for a Theory of Fitness. Biology and Philosophy 6 (1).
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  18. Alex Rosenberg & Frederic Bouchard (2005). Matthen and Ariew's Obituary for Fitness: Reports of its Death Have Been Greatly Exaggerated. Biology and Philosophy 20 (2-3).
    Philosophers of biology have been absorbed by the problem of defining evolutionary fitness since Darwin made it central to biological explanation. The apparent problem is obvious. Define fitness as some biologists implicitly do, in terms of actual survival and reproduction, and the principle of natural selection turns into an empty tautology: those organisms which survive and reproduce in larger numbers, survive and reproduce in larger numbers. Accordingly, many writers have sought to provide a definition for ‘fitness’ which avoid this outcome. (...)
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  19. Alexander Rosenberg (1982). On the Propensity Definition of Fitness. Philosophy of Science 49 (2):268-273.
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  20. Denis M. Walsh (2010). Not a Sure Thing: Fitness, Probability, and Causation. Philosophy of Science 77 (2):147-171.
    In evolutionary biology changes in population structure are explained by citing trait fitness distribution. I distinguish three interpretations of fitness explanations—the Two‐Factor Model, the Single‐Factor Model, and the Statistical Interpretation—and argue for the last of these. These interpretations differ in their degrees of causal commitment. The first two hold that trait fitness distribution causes population change. Trait fitness explanations, according to these interpretations, are causal explanations. The last maintains that trait fitness distribution correlates with population change but does not cause (...)
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Optimality
  1. Angela Potochnik (2010). Explanatory Independence and Epistemic Interdependence: A Case Study of the Optimality Approach. British Journal for the Philosophy of Science 61 (1):213-233.
    The value of optimality modeling has long been a source of contention amongst population biologists. Here I present a view of the optimality approach as at once playing a crucial explanatory role and yet also depending on external sources of confirmation. Optimality models are not alone in facing this tension between their explanatory value and their dependence on other approaches; I suspect that the scenario is quite common in science. This investigation of the optimality approach thus serves as a case (...)
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  2. Angela Potochnik (2009). Optimality Modeling in a Suboptimal World. Biology and Philosophy 24 (2).
    The fate of optimality modeling is typically linked to that of adaptationism: the two are thought to stand or fall together (Gould and Lewontin, Proc Relig Soc Lond 205:581–598, 1979; Orzack and Sober, Am Nat 143(3):361–380, 1994). I argue here that this is mistaken. The debate over adaptationism has tended to focus on one particular use of optimality models, which I refer to here as their strong use. The strong use of an optimality model involves the claim that selection is (...)
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  3. Angela Potochnik (2007). Optimality Modeling and Explanatory Generality. Philosophy of Science 74 (5):680-691.
    The optimality approach to modeling natural selection has been criticized by many biologists and philosophers of biology. For instance, Lewontin (1979) argues that the optimality approach is a shortcut that will be replaced by models incorporating genetic information, if and when such models become available. In contrast, I think that optimality models have a permanent role in evolutionary study. I base my argument for this claim on what I think it takes to best explain an event. In certain contexts, optimality (...)
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  4. Collin Rice & Joshua Smart (2011). Interdisciplinary Modeling: A Case Study of Evolutionary Economics. Biology and Philosophy 26 (5):655-675.
    Biologists and economists use models to study complex systems. This similarity between these disciplines has led to an interesting development: the borrowing of various components of model-based theorizing between the two domains. A major recent example of this strategy is economists’ utilization of the resources of evolutionary biology in order to construct models of economic systems. This general strategy has come to be called evolutionary economics and has been a source of much debate among economists. Although philosophers have developed literatures (...)
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Evolutionary Biology, Misc
  1. Mahesh Ananth (2008). In Defense of an Evolutionary Concept of Health. Ashgate.
    In responding to this debate, Ananth both surveys the existing literature, with special focus on the work of Christopher Boorse, and argues that a naturalistic ...
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  2. Alfonso Arroyo-Santos & Xavier de Donato-Rodríguez, Idealization and the Structure of Theories in Biololgy.
    In this paper we present a new framework of idealization in biology. We characterize idealizations as a network of counterfactual conditionals that can exhibit different degrees of contingency. We use the idea of possible worlds to say that, in departing more or less from the actual world, idealizations can serve numerous epistemic, methodological or heuristic purposes within scientific research. We defend that, in part, it is this structure what helps explain why idealizations, despite being deformations of reality, are so successful (...)
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  3. James Franklin (1986). Aristotle on Species Variation. Philosophy 61 (236):245 - 252.
    Explains Aristotle's views on the possibility of continuous variation between biological species.
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  4. Stephen Jay Gould, Return of the Hopeful Monster.
    ig Brother, the tyrant of George Orwell's 1984, directed his daily Two Minutes Hate against Emmanuel Goldstein, enemy of the people. When I studied evolutionary biology in graduate school during the mid 1960s, official rebuke and derision focused upon Richard Goldschmidt , a famous geneticist who, we were told, had gone astray. Although 1984 creeps up on us, I trust that the world will not be in Big Brother's grip by then. I do, however, predict that during this decade Goldschmidt (...)
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  5. Jonathan Kaplan & Massimo Pigliucci (2003). On the Concept of Biological Race and its Applicability to Humans. Philosophy of Science 69 (3):S294-S304.
    Biological research on race has often been seen as motivated by or lending credence to underlying racist attitudes; in part for this reason, recently philosophers and biologists have gone through great pains to essentially deny the existence of biological human races. We argue that human races, in the biological sense of local populations adapted to particular environments, do in fact exist; such races are best understood through the common ecological concept of ecotypes. However, human ecotypic races do not in general (...)
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  6. Nicholas Maxwell (1985). Methodological Problems of Neuroscience. In David Rose & Vernon Dobson (eds.), Models of the Visual Cortex. New York: John Wiley & Sons.
    In this paper I argue that neuroscience has been harmed by the widespread adoption of seriously inadequate methodologies or philosophies of science - most notably inductivism and falsificationism. I argue that neuroscience, in seeking to understand the human brain and mind, needs to follow in the footsteps of evolution.
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  7. Erika Milam, Roberta Millstein, Angela Potochnik & Joan Roughgarden (forthcoming). Sex and Sensibility: The Role of Social Selection. Metascience 20 (2):253-277.
    Sex and sensibility: The role of social selection Content Type Journal Article DOI 10.1007/s11016-010-9464-6 Authors Erika L. Milam, Department of History, University of Maryland, 2115 Francis Scott Key Hall, College Park, MD 20742, USA Roberta L. Millstein, Department of Philosophy, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA Angela Potochnik, Department of Philosophy, University of Cincinnati, P.O. Box 210374, Cincinnati, OH 45221, USA Joan E. Roughgarden, Department of Biology, Stanford University, Stanford, CA 94305-5020, USA Journal Metascience Online (...)
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  8. Gerd Muller & Massimo Pigliucci (2011). Extended Synthesis: Theory Expansion or Alternative? Biological Theory 5 (3):275-276.
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  9. Massimo Pigliucci (2011). When Science Studies Religion: Six Philosophy Lessons for Science Classes. Science and Education.
    It is an unfortunate fact of academic life that there is a sharp divide between science and philosophy, with scientists often being openly dismissive of philosophy, and philosophers being equally contemptuous of the naivete ́ of scientists when it comes to the philosophical underpinnings of their own discipline. In this paper I explore the possibility of reducing the distance between the two sides by introducing science students to some interesting philosophical aspects of research in evolutionary biology, using biological theories of (...)
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  10. Massimo Pigliucci (2010). Evolution – the Extended Synthesis. MIT Press.
    In the six decades since the publication of Julian Huxley's Evolution: The Modern Synthesis, spectacular empirical advances in the biological sciences have been accompanied by equally significant developments within the core theoretical framework of the discipline. As a result, evolutionary theory today includes concepts and even entire new fields that were not part of the foundational structure of the Modern Synthesis. In this volume, sixteen leading evolutionary biologists and philosophers of science survey the conceptual changes that have emerged since Huxley's (...)
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  11. Massimo Pigliucci (2010). Foreword to Julian Huxley's "Evolution: The Modern Synthesis". MIT Press.
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  12. Massimo Pigliucci (2010). Genotype–Phenotype Mapping and the End of the ‘Genes as Blueprint’ Metaphor. Philosophical Transactions Royal Society B 365:557–566.
    In a now classic paper published in 1991, Alberch introduced the concept of genotype–phenotype (G!P) mapping to provide a framework for a more sophisticated discussion of the integration between genetics and developmental biology that was then available. The advent of evo-devo first and of the genomic era later would seem to have superseded talk of transitions in phenotypic space and the like, central to Alberch’s approach. On the contrary, this paper shows that recent empirical and theoretical advances have only sharpened (...)
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  13. Massimo Pigliucci (2009). An Extended Synthesis for Evolutionary Biology. Annals of the New York Academy of Science 1168:218-228.
    Evolutionary theory is undergoing an intense period of discussion and reevaluation. This, contrary to the misleading claims of creationists and other pseudoscientists, is no harbinger of a crisis but rather the opposite: the field is expanding dramatically in terms of both empirical discoveries and new ideas. In this essay I briefly trace the conceptual history of evolutionary theory from Darwinism to neo-Darwinism, and from the Modern Synthesis to what I refer to as the Extended Synthesis, a more inclusive conceptual framework (...)
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  14. Massimo Pigliucci (2009). Four Billion Years in a Thousand Pages. [REVIEW] BioScience 59 (8):706-707.
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  15. Massimo Pigliucci (2009). The Overwhelming Evidence. [REVIEW] Science 323:716-717.
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  16. Massimo Pigliucci (2004). Studying the Plasticity of Phenotypic Integration in a Model Organism. In M. Pigliucci K. Preston (ed.), The Evolutionary Biology of Complex Phenotypes. Oxford University Press.
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  17. Massimo Pigliucci (2003). Species as Family Resemblance Concepts: The (Dis-)Solution of the Species Problem? BioEssays 25:596-602.
    The so-called ‘‘species problem’’ has plagued evolution- ary biology since before Darwin’s publication of the aptly titled Origin of Species. Many biologists think the problem is just a matter of semantics; others complain that it will not be solved until we have more empirical data. Yet, we don’t seem to be able to escape discussing it and teaching seminars about it. In this paper, I briefly examine the main themes of the biological and philosophical liter- atures on the species problem, (...)
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