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- William Bechtel, Some Virtues of Modeling with Both Hands.Webb distinguishes two endeavors she calls animal modeling and animat modeling and advocates for the former. I share her preference and point to additional virtues of modeling actual biological mechanisms (animal modeling). As Webb argues, animat modeling should be regarded as modeling of specific, but madeup, biological mechanisms. I contend that modeling made-up mechanisms in situations in which we have some knowledge of the actual mechanisms involved is modeling with one hand—the good one—tied behind one’s back.1 The hand that is used in animat modeling is constructing and evaluating models by whether they behave in the right way—do they exhibit the particular phenomenon one is trying to understand? The good hand that is disavowed seeks to use evidence about the mechanism employed in real living systems both for inspiration in designing the model and for evaluating the model. Denying oneself use of one’s good hand both limits one’s access to valuable evidence for evaluating a model and denies oneself access to a potent discovery strategy. Webb draws attention to one reason to employ the good hand—if models are to be relevant to biology (and not just characterize hypothetical mechanisms), then the component parts and operations specified in the model must in some way map onto those in actual biological organisms. Especially if one accepts the possibility of multiple realizations, then if one only uses behavior to evaluate the model one may well have described an alternative realization than that found in real organisms. To determine that one has modeled the actual realization, it is necessary to compare the proposed mechanism with the actual mechanism—does it..
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Richard Levins has advocated the scientific merits of qualitative modeling throughout his career. He believed an excessive and uncritical focus on emulating the models used by physicists and maximizing quantitative precision was hindering biological theorizing in particular. Greater emphasis on qualitative properties of modeled systems would help counteract this tendency, and Levins subsequently developed one method of qualitative modeling, loop analysis, to study a wide variety of biological phenomena. Qualitative modeling has been criticized for being conceptually and methodologically problematic. As a clear example of a qualitative modeling method, loop analysis shows this criticism is indefensible. The method has, however, some serious limitations. This paper describes loop analysis, its limitations, and attempts to clarify the differences between quantitative and qualitative modeling, in content and objective. Loop analysis is but one of numerous types of qualitative analysis, so its limitations do not detract from the currently underappreciated and underdeveloped role qualitative modeling could have within science.
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| | Scholar | At my library | More options ... Information modeling (also known as conceptual modeling or semantic data modeling) may be characterized as the formulation of a model in which information aspects of objective and subjective reality are presented (the application), independent of datasets and processes by which they may be realized (the system).A methodology for information modeling should incorporate a number of concepts which have appeared in the literature, but should also be formulated in terms of constructs which are understandable to and expressible by the system user as well as the system developer. This is particularly desirable in connection with certain intimate relationships, such as being the same as or being a part of.
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| | Scholar | At my library | More options ... Explaining the complex dynamics exhibited in many biological mechanisms requires extending the recent philosophical treatment of mechanisms that emphasizes sequences of operations. To understand how nonsequentially organized mechanisms will behave, scientists often advance what we call dynamic mechanistic explanations. These begin with a decomposition of the mechanism into component parts and operations, using a variety of laboratory-based strategies. Crucially, the mechanism is then recomposed by means of computational models in which variables or terms in differential equations correspond to properties of its parts and operations. We provide two illustrations drawn from research on circadian rhythms. Once biologists identified some of the components of the molecular mechanism thought to be responsible for circadian rhythms, computational models were used to determine whether the proposed mechanisms could generate sustained oscillations. Modeling has become even more important as researchers have recognized that the oscillations generated in individual neurons are synchronized within networks; we describe models being employed to assess how different possible network architectures could produce the observed synchronized activity.
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| | Scholar | More options ... Robots are being extensively used for the purpose of discovering and testing empirical hypotheses about biological sensorimotor mechanisms. We examine here methodological problems that have to be addressed in order to design and perform “good” experiments with these machine models. These problems notably concern the mapping of biological mechanism descriptions into robotic mechanism descriptions; the distinction between theoretically unconstrained “implementation details” and robotic features that carry a modeling weight; the role of preliminary calibration experiments; the monitoring of experimental environments for disturbing factors that affect both modeling features and theoretically unconstrained implementation details of robots. Various assumptions that are gradually introduced in the process of setting up and performing these robotic experiments become integral parts of the background hypotheses that are needed to bring experimental observations to bear on biological mechanism descriptions.
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| | Other links: journals.uchicago.edu dx.doi.org | Scholar | At my library | More options ... We support Webb's insights into the potential benefits of using robotic modeling to better understand biological behavior. We defend the major points put forward by Webb by presenting a specific case study in which robotic modeling of mobile ball catching has helped refine and clarify aspects of our understanding of biological interceptive behavior.
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| | Scholar | At my library | More options ... Contemporary literature in philosophy of science has begun to emphasize the practice of modeling, which differs in important respects from other forms of representation and analysis central to standard philosophical accounts. This literature has stressed the constructed nature of models, their autonomy, and the utility of their high degrees of idealization. What this new literature about modeling lacks, however, is a comprehensive account of the models that figure in to the practice of modeling. This paper offers a new account of both concrete and mathematical models, with special emphasis on the intentions of theorists, which are necessary for evaluating the model-world relationship during the practice of modeling. Although mathematical models form the basis of most of contemporary modeling, my discussion begins with more traditional, concrete models such as the San Francisco Bay model.
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| | Scholar | More options ... Role modeling is widely thought to be a principal vehicle for acquiring the virtues. Yet, little is known about role modeling as a process. This paper surveys the behavioral sciences for insights about how one person can find the actions of another person so inspirational that the person attempts to reproduce the behavior in question. In general, such inspiration occurs when an observer sees a model similar to herself, wrestling with a problem she is having, such that the model’s accomplishments are seen as attainable. When the behavior modeled is moral, additional complications arise, not the least of which is the contemporary skepticism about anyone held up as a hero. The paper concludes with some suggestions about how organizations can facilitate the development of the virtues through role modeling.
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| | Scholar | At my library | More options ... There are many different kinds of model and scientists do all kind of things with them. This diversity of model type and model use is a good thing for science. Indeed, it is crucial especially for the biological and cognitive sciences, which have to solve many different problems at many different scales, ranging from the most concrete of the structural details of a DNA molecule to the most abstract and generic principles of self-organization in networks. Getting a grip (or more likely many separate grips) on this range of topics calls for a teeming forest of techniques, including many different modeling techniques. Barbara Webb’s target article strikes us as a proposal for clear-cutting the forest. We think clear-cutting here would be as good for science as it is for non-metaphorical forests. Our argument for this is primarily a recitation of a few of the ways that diversity has been useful. Recently, looking at the actual practice of artificial life modelers, one of us distinguished four uses of simulation models classified in terms of the position the models take up between theory and data (see Figure 1). The classification is not exhaustive, and the barriers between kinds are not absolute. Rather, the purpose of the taxonomy is to open up the view for an epistemic ecology of modeling practices. First, and closest to the empirical domain, there are mechanistic models, in which there is an almost one-to-one correspondence between variables in the model and observables in the target system and its environment. Webb’s..
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| | Other links: edisk.fandm.edu | Scholar | More options ... Levelt et al. attempt to “model their theory” with WEAVER++. Modeling theories requires a model theory. The time is ripe for a methodology for building, testing, and evaluating computational models. We propose a tentative, five-step framework for tackling this problem, within which we discuss the potential strengths and weaknesses of Levelt et al.'s modeling approach.
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| | Scholar | At my library | More options ... Two widely accepted assumptions within cognitive science are that (1) the goal is to understand the mechanisms responsible for cognitive performances and (2) computational modeling is a major tool for understanding these mechanisms. The particular approaches to computational modeling adopted in cognitive science, moreover, have significantly affected the way in which cognitive mechanisms are understood. Unable to employ some of the more common methods for conducting research on mechanisms, cognitive scientists’ guiding ideas about mechanism have developed in conjunction with their styles of modeling. In particular, mental operations often are conceptualized as comparable to the processes employed in classical symbolic AI or neural network models. These models, in turn, have been interpreted by some as themselves intelligent systems since they employ the same type of operations as does the mind. For this paper, what is significant about these approaches to modeling is that they are constructed specifically to account for behavior and are evaluated by how well they do so—not by independent evidence that they describe actual operations in mental mechanisms.
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| | Scholar | More options ... Discussion of William Bechtel, Some virtues of modeling with both hands
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