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- Brett Calcott (2009). Lineage Explanations: Explaining How Biological Mechanisms Change. British Journal for the Philosophy of Science 60 (1):51-78.This paper describes a pattern of explanation prevalent in the biological sciences that I call a ‘lineage explanation’. The aim of these explanations is to make plausible certain trajectories of change through phenotypic space. They do this by laying out a series of stages, where each stage shows how some mechanism worked, and the differences between each adjacent stage demonstrates how one mechanism, through minor modifications, could be changed into another. These explanations are important, for though it is widely accepted that there is an ‘incremental constraint’ on evolutionary change, in an important class of cases it is difficult to see how to satisfy this constraint. I show that lineage explanations answer important questions about evolutionary change, but do so by demonstrating differences between individuals rather than invoking population processes, such as natural selection.
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Within evolutionary biology a distinction is frequently made between proximate and ultimate causes. One apparently plausible interpretation of this dichotomy is that proximate causes concern processes occurring during the life of an organism while ultimate causes refer to those processes (particularly natural selection) that shaped its genome. But ultimate causes are not sought through historical investigations of an organisms lineage. Rather, explanations referring to ultimate causes typically emerge from functional analyses. But these functional analyses do not identify causes of any kind, much less ultimate ones. So-called ultimate explanations are not about causes in any sense resembling those of proximate explanations. The attitude, implicit in the term ultimate cause, that these functional analyses are somehow superordinate to those involving proximate causes is unfounded. Ultimate causes are neither ultimate nor causes.
The ultimate source of explanation in biology is the principle of natural selection. Natural selection means differential reproduction of genes and gene combinations. It is a mechanistic process which accounts for the existence in living organisms of end-directed structures and processes. It is argued that teleological explanations in biology are not only acceptable but indeed indispensable. There are at least three categories of biological phenomena where teleological explanations are appropriate.
The recent literature in philosophy of biology has drawn attention to the different sorts of explanations proffered in the biological sciences—we have molecular, biomedical, and evolutionary explanations. Do these explanations all have a common structure or relation that they seek to capture? This paper will answer in the negative. I defend a pluralistic and pragmatic approach to explanation. Using examples from classical population genetics, I argue that formal demonstrations, and even strictly “mathematical truths,” may serve as explanatory in different historical contexts.
This paper argues that besides mechanistic explanations, there is a kind of explanation that relies upon “topological” properties of systems in order to derive the explanandum as a consequence, and which does not consider mechanisms or causal processes. I first investigate topological explanations in the case of ecological research on the stability of ecosystems. Then I contrast them with mechanistic explanations, thereby distinguishing the kind of realization they involve from the realization relations entailed by mechanistic explanations, and explain how both kinds of explanations may be articulated in practice. The second section, expanding on the case of ecological stability, considers the phenomenon of robustness at all levels of the biological hierarchy in order to show that topological explanations are indeed pervasive there. Reasons are suggested for this, in which “neutral network” explanations are singled out as a form of topological explanation that spans across many levels. Finally, I appeal to the distinction of explanatory regimes to cast light on a controversy in philosophy of biology, the issue of contingence in evolution, which is shown to essentially involve issues about realization.
A prominent historiographic theme in the past decade has been a movement away from causal explanation of large-scale processes and outcomes and toward narrative interpretation of singular historical processes. This article argues for the continued vitality of large-scale historical inquiry and surveys the historiographic issues that arise in large-scale historical explanation. The article proceeds through an examination of several important recent examples of large-scale history: comparative history of Europe and China, the history of alternative forms of industrial organization, and the history of technology. These three cases provide the basis for a conception of what may be called "conjunctural contingent meso-level" explanations: explanations that identify intermediate-level structures and processes and highlight both the structural factors that govern change and the multiple pathways that change can take.
It is important to be clear as to whether a theory such as evolutionary archaeology pertains to biological evolution, in which acquired change is obliterated at the end of each generation, or cultural change, in which acquired change is retained. In evolutionary archaeology, (1) the population is said to consist of artifacts, yet (2) artifacts are said to be phenotypic. Neither (1) nor (2) is necessarily problematic in and of itself, but the two are inconsistent, as the first pertains to cultural change whereas the second to the biological evolution of humans. A first step to avoiding this problem is to recognize that there is a need for a theory of change specific to human culture. Referring to ongoing work using a related approach to cultural change, it is suggested that the inconsistencies in evolutionary archaeology, though problematic, are not insurmountable.
Chemists take mechanisms to be an important way of explaining chemical change. I examine the usefulness of the mechanism approach in the recent philosophical literature in explicating the explanatory use of mechanisms by organic chemists. I argue that chemists consider a mechanism to be explanatory because it accounts for the “dynamic process of bringing about” (Tabery 2004 , 10) chemical change. For chemists, mechanisms are causal explanations based on interventions that show “how some possibilities depend on others” (Woodward 2003 , 375). Only possibilities are achievable because chemists face a number of challenges when they explain by means of a mechanism. †To contact the author, please write to: Department of Philosophy, Smith College, Northampton, MA 01063; e‐mail: jramsey@smith.edu.
Philosophers intent upon characterizing the difference between physics and biology often seize upon the purported fact that physical explanations conform more closely to the covering law model than biological explanations. Central to this purported difference is the role of laws of nature in the explanations of these two sciences. However, I argue that, although certain important differences between physics and biology can be highlighted by differences between physical and biological explanations, these differences are not differences in the degree to which those explanations conform to the covering law model, which fits biology about as well as it does physics.
This paper discusses various problems of explanations by mechanisms. Two positions are distinguished: the narrow position claims that only explanations by mechanisms are acceptable. It is argued that this position leads to an infinite regress because the discovery of a mechanism must entail the search for other mechanisms etc. Another paradoxical consequence of this postulate is that every successful explanation by mechanisms is unsatisfactory because it generates new ``black box'' explanations. The second â liberal â position that is advanced in this paper regards, besides explanations by mechanisms, also the discovery of bivariate correlations as a first step of an explanation by mechanisms as meaningful. It is further argued that there is no contradiction between causal analysis and the explanation by mechanisms. Instead, explanations by mechanisms always presuppose the analysis of causal structures (but not vice versa). The final point is that an explanation by mechanisms is not inconsistent with the Hempel-Oppenheim scheme of explanation.
No categories
Cultural traits are those phenotypic traits whose development depends on social learning. These include practices, skills, beliefs, desires, values, and artefacts. The distribution of cultural traits in the human species changes over time. But this is not enough to show that culture evolves. That depends on the mechanisms of change. In the cultural realm, one can often observe something similar to biology’s ‘descent with modification’: cultural traits are sometimes modified, their modifications are sometimes retained and passed on to others through social learning, until new modifications are added. In this way, new modifications are piled on top of old modifications, generating cumulative change. But, again, this is not enough to show that culture evolves. For culture to evolve, cumulative change must be the result of hidden-hand mechanisms similar to those that explain cumulative biological change. If cumulative cultural change cannot be explained in these terms, the analogy between cultural change and biological evolution is unhelpful. The best known biological mechanism is natural selection. There are reasons to think that cultural change is at least sometimes due to natural-selection-like mechanisms. The adaptive fit often found between cultural traits and the environment has in many cases been built gradually and in a way that involves natural selection operating at the cultural level. The parallel with morphological adaptation is compelling. No complete and universally accepted account of natural-selectionlike processes operating at the cultural level exists at this stage. But at least three kinds of processes seem possible.
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