David Bourget (Western Ontario)
David Chalmers (ANU, NYU)
Rafael De Clercq
Ezio Di Nucci
Jack Alan Reynolds
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Daniel Gibson, Benders G., A. Gwynedd, Cynthia Andrews-Pfannkoch, Evgeniya Denisova, Baden-Tillson A., Zaveri Holly, Stockwell Jayshree, B. Timothy, Anushka Brownley, David Thomas, Algire W., A. Mikkel, Chuck Merryman, Lei Young, Vladimir Noskov, Glass N., I. John, J. Craig Venter, Clyde Hutchison, Smith A. & O. Hamilton
Science 319 (5867):1215--1220 (2008)
We have synthesized a 582,970-base pair Mycoplasma genitalium genome. This synthetic genome, named M. genitalium JCVI-1.0, contains all the genes of wild-type M. genitalium G37 except MG408, which was disrupted by an antibiotic marker to block pathogenicity and to allow for selection. To identify the genome as synthetic, we inserted "watermarks" at intergenic sites known to tolerate transposon insertions. Overlapping "cassettes" of 5 to 7 kilobases (kb), assembled from chemically synthesized oligonucleotides, were joined by in vitro recombination to produce intermediate assemblies of approximately 24 kb, 72 kb ("1/8 genome"), and 144 kb ("1/4 genome"), which were all cloned as bacterial artificial chromosomes in Escherichia coli. Most of these intermediate clones were sequenced, and clones of all four 1/4 genomes with the correct sequence were identified. The complete synthetic genome was assembled by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae, then isolated and sequenced. A clone with the correct sequence was identified. The methods described here will be generally useful for constructing large DNA molecules from chemically synthesized pieces and also from combinations of natural and synthetic DNA segments. 10.1126/science.1151721.
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Christophe Malaterre (2013). Synthetic Biology and Synthetic Knowledge. Biological Theory (8):346–356.
Bernd Giese, Stefan Koenigstein, Henning Wigger, Jan C. Schmidt & Arnim von Gleich (2013). Rational Engineering Principles in Synthetic Biology: A Framework for Quantitative Analysis and an Initial Assessment. Biological Theory 8 (4):324-333.
Randal A. Koene (2012). Experimental Research in Whole Brain Emulation: The Need for Innovativein Vivomeasurement Techniques. International Journal of Machine Consciousness 4 (01):35-65.
Leon Huynen, Craig D. Millar & David M. Lambert (2012). Resurrecting Ancient Animal Genomes: The Extinct Moa and More. Bioessays 34 (8):661-669.
John Basl & Ronald Sandler (2013). The Good of Non-Sentient Entities: Organisms, Artifacts, and Synthetic Biology. Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):697-705.
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