David Bourget (Western Ontario)
David Chalmers (ANU, NYU)
Rafael De Clercq
Jack Alan Reynolds
Learn more about PhilPapers
Melissa Haendel, Fabian Neuhaus, David Osumi-Sutherland, Paula M. Mabee, José L. V. Mejino Jr, Chris J. Mungall & Barry Smith
In Anatomy Ontologies for Bioinformatics: Principles and Practice. Springer (2008)
The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies. CARO has a structural axis of classification based on the top-level nodes of the Foundational Model of Anatomy. CARO will complement the developmental process sub-ontology of the GO Biological Process ontology, using it to ensure the coherent treatment of developmental stages, and to provide a common framework for the model organism communities to classify developmental structures. Definitions for the types and relationships are being generated by a consortium of investigators from diverse backgrounds to ensure applicability to all organisms. CARO will support the coordination of cross-species ontologies at all levels of anatomical granularity by cross-referencing types within the cell type ontology (CL) and the Gene Ontology (GO) Cellular Component ontology. A complete cross-species CARO could be utilized in other ontologies for cross-product generation.
|Keywords||anatomy ontology species|
|Categories||categorize this paper)|
Setup an account with your affiliations in order to access resources via your University's proxy server
Configure custom proxy (use this if your affiliation does not provide a proxy)
|Through your library|
References found in this work BETA
No references found.
Citations of this work BETA
No citations found.
Similar books and articles
Cornelius Rosse, Anand Kumar, Jose L. V. Mejino, Daniel L. Cook, Landon T. Detwiler & Barry Smith (2005). A Strategy for Improving and Integrating Biomedical Ontologies. In Proceedings of the Annual Symposium of the American Medical Informatics Association. AMIA.
Barry Smith & Cornelius Rosse (2004). The Role of Foundational Relations in the Alignment of Biomedical Ontologies. In Medinfo. IOS Press.
Barry Smith (2012). Classifying Processes: An Essay in Applied Ontology. Ratio 25 (4):463-488.
Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Mungall Christopher J., Neocles Leontis & Others (2007). The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration. Nature Biotechnology 25 (11):1251-1255.
Barry Smith, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kuma, Jane Lomax, Chris Mungall, , Fabian Neuhaus, Alan Rector & Cornelius Rosse (2005). Relations in Biomedical Ontologies. Genome Biology 6 (5):R46.
James M. Fielding & Dirk Marwede (2012). The Anatomy of the Image: Toward an Applied Onto-Psychiatry. Philosophy, Psychiatry, and Psychology 18 (4):287-303.
Barry Smith (2004). Beyond Concepts: Ontology as Reality Representation. In Formal Ontology in Information Systems (FOIS).
Janna Hastings, Werner Ceusters, Mark Jensen, Kevin Mulligan & Barry Smith (2012). Representing Mental Functioning: Ontologies for Mental Health and Disease. In Towards an Ontology of Mental Functioning (ICBO Workshop), Proceeedings of the Third International Conference on Biomedical Ontology.
Chris Brink & Ingrid Rewitzky (2002). Three Dual Ontologies. Journal of Philosophical Logic 31 (6):543-568.
Barry Smith, Jose L. V. Mejino Jr, Stefan Schulz, Anand Kumar & Cornelius Rosse (2005). Anatomical Information Science. In Spatial Information Theory. Springer.
Barry Smith (2008). Ontology (Science). In Luciano Floridi (ed.), Formal Ontology in Information Systems. Blackwell. 153--166.
Gary H. Merrill (2010). Realism and Reference Ontologies: Considerations, Reflections, and Problems. Applied Ontology 5 (3-4):189-221.
Added to index2012-09-23
Total downloads4 ( #272,798 of 1,167,068 )
Recent downloads (6 months)1 ( #140,193 of 1,167,068 )
How can I increase my downloads?