David Bourget (Western Ontario)
David Chalmers (ANU, NYU)
Rafael De Clercq
Ezio Di Nucci
Jack Alan Reynolds
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Studies in History and Philosophy of Science Part C 38 (4):834-846 (2007)
Metagenomics is an emerging microbial systems science that is based on the large-scale analysis of the DNA of microbial communities in their natural environments. Studies of metagenomes are revealing the vast scope of biodiversity in a wide range of environments, as well as new functional capacities of individual cells and communities, and the complex evolutionary relationships between them. Our examination of this science focuses on the ontological implications of these studies of metagenomes and metaorganisms, and what they mean for common sense and philosophical understandings of multicellularity, individuality and organism. We show how metagenomics requires us to think in different ways about what human beings are and what their relation to the microbial world is. Metagenomics could also transform the way in which evolutionary processes are understood, with the most basic relationship between cells from both similar and different organisms being far more cooperative and less antagonistic than is widely assumed. In addition to raising fundamental questions about biological ontology, metagenomics generates possibilities for powerful technologies addressed to issues of climate, health and conservation. We conclude with reflections about process-oriented versus entity-oriented analysis in light of current trends towards systems approaches
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References found in this work BETA
Peter K. Machamer, Lindley Darden & Carl F. Craver (2000). Thinking About Mechanisms. Philosophy of Science 67 (1):1-25.
Carl F. Craver & William Bechtel (2007). Top-Down Causation Without Top-Down Causes. Biology and Philosophy 22 (4):547-563.
Maureen A. O’Malley & John Dupré (2007). Size Doesn't Matter: Towards a More Inclusive Philosophy of Biology. [REVIEW] Biology and Philosophy 22 (2):155-191.
Carl F. Craver (2005). Beyond Reduction: Mechanisms, Multifield Integration and the Unity of Neuroscience. Studies in History and Philosophy of Science Part C 36 (2):373-395.
Maureen A. O'Malley & John Dupré (2005). Fundamental Issues in Systems Biology. Bioessays 27 (12):1270-1276.
Citations of this work BETA
Jonathan Beever & Nicolae Morar (2016). The Porosity of Autonomy: Social and Biological Constitution of the Patient in Biomedicine. American Journal of Bioethics 16 (2):34-45.
John Dupré (2013). Living Causes. Aristotelian Society Supplementary Volume 87 (1):19-37.
Carol E. Cleland (2007). Epistemological Issues in the Study of Microbial Life: Alternative Terran Biospheres? Stud. Hist. Phil. Biol. And Biomed. Sci 38 (4):847-61.
Steven French (2011). Shifting to Structures in Physics and Biology: A Prophylactic for Promiscuous Realism. Studies in History and Philosophy of Science Part C 42 (2):164-173.
Carol E. Cleland (2013). Pluralism or Unity in Biology: Could Microbes Hold the Secret to Life? Biology and Philosophy 28 (2):189-204.
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