David Bourget (Western Ontario)
David Chalmers (ANU, NYU)
Rafael De Clercq
Jack Alan Reynolds
Learn more about PhilPapers
Studies in Health and Technology Informatics 102:20–38 (2004)
Current approaches to formal representation in biomedicine are characterized by their focus on either the static or the dynamic aspects of biological reality. We here outline a theory that combines both perspectives and at the same time tackles the by no means trivial issue of their coherent integration. Our position is that a good ontology must be capable of accounting for reality both synchronically (as it exists at a time) and diachronically (as it unfolds through time), but that these are two quite different tasks, whose simultaneous realization is by no means trivial. The paper is structured as follows. We begin by laying out the methodological and philosophical background of our approach. We then summarize the structure and elements of the Basic Formal Ontology on which it rests, in particular the SNAP ontology of objects and the SPAN ontology of processes. Finally, we apply the general framework to the specific domain of biomedicine.
|Keywords||Basic Formal Ontology (BFO) applied ontology|
|Categories||categorize this paper)|
Setup an account with your affiliations in order to access resources via your University's proxy server
Configure custom proxy (use this if your affiliation does not provide a proxy)
|Through your library|
References found in this work BETA
No references found.
Citations of this work BETA
No citations found.
Similar books and articles
Barry Smith (2012). Classifying Processes: An Essay in Applied Ontology. Ratio 25 (4):463-488.
Cornelius Rosse, Anand Kumar, Jose L. V. Mejino, Daniel L. Cook, Landon T. Detwiler & Barry Smith (2005). A Strategy for Improving and Integrating Biomedical Ontologies. In Proceedings of the Annual Symposium of the American Medical Informatics Association. AMIA.
Pierre Grenon & Barry Smith (2004). SNAP and SPAN: Towards Dynamic Spatial Ontology. Spatial Cognition and Computation 4 (1):69–103.
Werner Ceusters & Barry Smith (2010). Foundations for a Realist Ontology of Mental Disease. Journal of Biomedical Semantics 1 (10):1-23.
Daniel L. Rubin (2012). Finding the Meaning in Images: Annotation and Image Markup. Philosophy, Psychiatry, and Psychology 18 (4):311-318.
Barry Smith (2006). Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain. In Proceedings of KR-MED.
Janna Hastings, Werner Ceusters, Barry Smith & Kevin Mulligan (2011). Dispositions and Processes in the Emotion Ontology. In Proceedings of the 2nd International Conference on Biomedical Ontology. CEUR Workshop Proceedings, 833.
Barry Smith (2004). Beyond Concepts: Ontology as Reality Representation. In Formal Ontology in Information Systems (FOIS).
Pierre Grenon & Barry Smith (2011). Foundations of an Ontology of Philosophy. Synthese 182 (2):185-204.
Thomas Bittner, Maureen Donnelly & Barry Smith (2004). Individuals, Universals, Collections: On the Foundational Relations of Ontology. In Achille Varzi & Laure Vieu (eds.), Formal Ontology in Information Systems. Proceedings of the Third International Conference, 37–48. IOS Press. 37–48..
Thomas Bittner, Maureen Donnelly & Barry Smith (2004). Individuals, Universals, Collections: On the Foundational Relations of Ontology. In Achille Varzi Laure Vieu (ed.), Formal Ontology in Information Systems. Proceedings of the Third International Conference. IOS Press. 37–48.
Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Mungall Christopher J., Neocles Leontis & Others (2007). The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration. Nature Biotechnology 25 (11):1251-1255.
Thomas Bittner, Maureen Donnelly & Barry Smith (2004). Endurants and Perdurants in Directly Depicting Ontologies. AI Communications 13 (4):247–258.
Added to index2011-04-04
Total downloads25 ( #69,064 of 1,101,181 )
Recent downloads (6 months)6 ( #44,374 of 1,101,181 )
How can I increase my downloads?