Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain
In Proceedings of KR-MED (2006)
| Abstract | Ontology is a burgeoning field, involving researchers from the computer science, philosophy, data and software engineering, logic, linguistics, and terminology domains. Many ontology-related terms with precise meanings in one of these domains have different meanings in others. Our purpose here is to initiate a path towards disambiguation of such terms. We draw primarily on the literature of biomedical informatics, not least because the problems caused by unclear or ambiguous use of terms have been there most thoroughly addressed. We advance a proposal resting on a distinction of three levels too often run together in biomedical ontology research: 1. the level of reality; 2. the level of cognitive representations of this reality; 3. the level of textual and graphical artifacts. We propose a reference terminology for ontology research and development that is designed to serve as common hub into which the several competing disciplinary terminologies can be mapped. We then justify our terminological choices through a critical treatment of the ‘concept orientation’ in biomedical terminology research. | |||||||||
| Keywords | ontology medicine | |||||||||
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Barry Smith (2005). A Strategy for Improving and Integrating Biomedical Ontologies. In Proceedings of the Annual Symposium of the American Medical Informatics Association. AMIA.
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David P. Hill, Barry Smith, Monica S. McAndrews-Hill & Judith A. Blake (2008). Gene Ontology Annotations: What They Mean and Where They Come From. BMC Bioinformatics( 9 (Suppl 5):S2.
Werner Ceusters (2006). A Realism-Based Approach to the Evolution of Biomedical Ontologies. In Proceedings of the Annual AMIA Symposium. AMIA.
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Gary H. Merrill (2010). Realism and Reference Ontologies: Considerations, Reflections, and Problems. Applied Ontology 5 (3-4):189-221.
Gerhard Budin (2007). L’Apport de la Philosophie Autrichienne au Développement de la Théorie de la Terminologie. Langages 2007 (168):11-23.
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Barry Smith (2012). Classifying Processes: An Essay in Applied Ontology. Ratio 25 (4):463-488.
Werner Ceusters & Barry Smith (2010). Foundations for a Realist Ontology of Mental Disease. Journal of Biomedical Semantics 1 (10):1-23.
Barry Smith (2005). The Logic of Biological Classification and the Foundations of Biomedical Ontology. In Logic, Methodology and Philosophy of Science. Proceedings of the 12th International Conference.
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