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  1. Francisco Vergara-Silva (forthcoming). Pattern Cladistics and the 'Realism–Antirealism Debate' in the Philosophy of Biology. Acta Biotheoretica.
    Despite the amount of work that has been produced on the subject over the years, the ‘transformation of cladistics’ is still a misunderstood episode in the history of comparative biology. Here, I analyze two outstanding, highly contrasting historiographic accounts on the matter, under the perspective of an influential dichotomy in the philosophy of science: the opposition between Scientific Realism and Empiricism. Placing special emphasis on the notion of ‘causal grounding’ of morphological characters ( sensu Olivier Rieppel) in modern developmental biology’s (...)
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  2. Alfonso Arroyo-Santos, Mark E. Olson & Francisco Vergara-Silva (2013). The Phylogeography Debate and the Epistemology of Model-Based Evolutionary Biology. Biology and Philosophy:1-18.
    Phylogeography, a relatively new subdicipline of evolutionary biology that attempts to unify the fields of phylogenetics and population biology in an explicit geographical context, has hosted in recent years a highly polarized debate related to the purported benefits and limitations that qualitative versus quantitative methods might contribute or impose on inferential processes in evolutionary biology. Here we present a friendly, non-technical introduction to the conflicting methods underlying the controversy, and exemplify it with a balanced selection of quotes from the primary (...)
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  3. Francisco Vergara-Silva & Rasmus Grønfeldt Winther (2009). Editorial: Systematics, Darwinism, and the Philosophy of Science. Acta Biotheoretica 57:1-3.
  4. Francisco Vergara-Silva (2003). Plants and the Conceptual Articulation of Evolutionary Developmental Biology. Biology and Philosophy 18 (2):249-284.