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  1. Johannes Jaeger, Manfred Laubichler & Werner Callebaut (2015). The Comet Cometh: Evolving Developmental Systems. Biological Theory 10 (1):36-49.
    In a recent opinion piece, Denis Duboule has claimed that the increasing shift towards systems biology is driving evolutionary and developmental biology apart, and that a true reunification of these two disciplines within the framework of evolutionary developmental biology may easily take another 100 years. He identifies methodological, epistemological, and social differences as causes for this supposed separation. Our article provides a contrasting view. We argue that Duboule’s prediction is based on a one-sided understanding of systems biology as a science (...)
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  2. Werner Callebaut (2014). Some Contemporary Elaborations of Darwinian Themes. Biological Theory 9 (3):251-252.
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  3. Werner Callebaut (2013). Naturalizing Theorizing: Beyond a Theory of Biological Theories. [REVIEW] Biological Theory 7 (4):413-429.
    Although “theory” has been the prevalent unit of analysis in the meta-study of science throughout most of the twentieth century, the concept remains elusive. I further explore the leitmotiv of several authors in this issue: that we should deal with theorizing (rather than theory) in biology as a cognitive activity that is to be investigated naturalistically. I first contrast how philosophers and biologists have tended to think about theory in the last century or so, and consider recent calls to upgrade (...)
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  4. Werner Callebaut (2013). Scholastic Temptations in the Philosophy of Biology. Biological Theory 8 (1):1-6.
  5. Werner Callebaut (2013). The Evolution of Chicago. Biological Theory 7 (1):1-2.
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  6. Werner Callebaut (2013). The Tension Between Tradition and Innovation. Biological Theory 7 (3):187-188.
  7. Massimo Pigliucci, Kim Sterelny & Werner Callebaut (2013). The Meaning of “Theory” in Biology. Biological Theory 7 (4):285-286.
  8. Werner Callebaut (2012). Scientific Perspectivism: A Philosopher of Science's Response to the Challenge of Big Data Biology. Studies in History and Philosophy of Science Part C 43 (1):69-80.
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  9. Werner Callebaut (2011). Beyond Generalized Darwinism. I. Evolutionary Economics From the Perspective of Naturalistic Philosophy of Biology. Biological Theory 6 (4):338-350.
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  10. Werner Callebaut (2011). Beyond Generalized Darwinism. II. More Things in Heaven and Earth. Biological Theory 6 (4):351-365.
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  11. Werner Callebaut (2011). Peering Up Above the Malthusian Abyss. Biological Theory 6 (2):103-105.
  12. Christophe Heintz, Werner Callebaut & Luigi Marengo (2011). How Evolutionary is Evolutionary Economics? Biological Theory 6 (4):291-292.
  13. Werner Callebaut (2010). Contingency and Inherency in Evolutionary Developmental Biology. In Mauricio Suarez, Mauro Dorato & Miklos Redei (eds.), Epsa Philosophical Issues in the Sciences. Springer 1--7.
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  14. Werner Callebaut (2010). Divided We Stand. Biological Theory 5 (4):295-295.
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  15. Werner Callebaut (2010). Risky Business…. Biological Theory 5 (2):101-101.
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  16. Werner Callebaut & Manfred Laubichler (2010). The Moody’s Virus Attacks the U.S. National Science Board. Biological Theory 5 (1):1-2.
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  17. Werner Callebaut (2009). Not the Only Game in Town. Biological Theory 4 (2):107-111.
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  18. Werner Callebaut (2008). Fractals and Multi-Scale Modeling in Biology. Biological Theory 3 (4):291-292.
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  19. Werner Callebaut & Manfred Laubichler (2008). Formalizing Biology. Biological Theory 3 (1):1-2.
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  20. William A. Griffin, Manfred D. Laubichler & Werner Callebaut (2008). Agents, Modeling Processes, and the Allure of Prophecy. Biological Theory 3 (1):73-78.
    Ioannidis [Why most published research findings are false. PLoS Med 2: e124 ] identifies six factors that contribute to explaining why most of the current published research findings are more likely to be false than true, and argues that for many current scientific fields, claimed research findings may often be simply accurate measures of the prevailing bias. In this article, we argue that three “hot” areas in current biological research, viz., agent-based modeling, evolutionary developmental biology , and systems biology, are (...)
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  21. Werner Callebaut (2007). Transcendental Niche Construction. Acta Biotheoretica 55 (1):73-90.
    I discuss various reactions to my article “Again, what the philosophy of science is not” [Callebaut (Acta Biotheor 53:92–122 (2005a))], most of which concern the naturalism issue, the place of the philosophy of biology within philosophy of science and philosophy at large, and the proper tasks of the philosophy of biology.
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  22. Werner Callebaut (2007). Herbert Simon's Silent Revolution. Biological Theory 2 (1):76-86.
    Simon’s bounded rationality , the first scientific research program to seriously take the cognitive limitations of decision makers into account, has often been conflated with his more restricted concept of satisficing—choosing an alternative that meets or exceeds specified criteria, but that is not guaranteed to be unique or in any sense “the best.” Proponents of optimization often dismiss bounded rationality out of hand with the following “hallway syllogism” : bounded rationality “boils down to” satisficing; satisficing is “simply” a theory of (...)
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  23. Werner Callebaut (2007). Modeling Organisms. Biological Theory 2 (2):209-210.
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  24. Werner Callebaut & Manfred D. Laubichler (2007). Biocomplexity as a Challenge for Biological Theory. Biological Theory 2 (1):1-2.
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  25. Werner Callebaut & Manfred D. Laubichler (2007). From Cells to Systems: Conceptual Abstractions of Biological Building Blocks. Biological Theory 2 (2):117-118.
  26. Ulrich Krohs & Werner Callebaut (2007). Data Without Models Merging with Models Without Data. In Fred C. Boogerd, Frank J. Bruggeman, Jan-Hendrik S. Hofmeyr & Hans V. Westerhoff (eds.), Systems Biology: Philosophical Foundations. Elsevier 181--213.
    Systems biology is largely tributary to genomics and other “omic” disciplines that generate vast amounts of structural data. “Omics”, however, lack a theoretical framework that would allow using these data sets as such (rather than just tiny bits that are extracted by advanced data-mining techniques) to build explanatory models that help understand physiological processes. Systems biology provides such a framework by adding a dynamic dimension to merely structural “omics”. It makes use of bottom-up and top-down models. The former are based (...)
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  27. Manfred Laubichler & Werner Callebaut (2007). General Biology” Old and New: The Challenges Facing Biological Explanation. Biological Theory 2 (4):329-331.
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  28. William Bechtel, Werner Callebaut, James R. Griesemer & Jeffrey C. Schank (2006). Bill Wimsatt on Multiple Ways of Getting at the Complexity of Nature. Biological Theory 1 (2):213-219.
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  29. Werner Callebaut (2006). Conference Report: Epigenetic Developments. Biological Theory 1 (1):108-109.
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  30. Werner Callebaut, Linnda R. Caporael, Peter Hammerstein, Manfred D. Laubichler & Gerd B. Müller (2006). Risking Deeper Integration. Biological Theory 1 (1):1-3.
  31. Werner Callebaut & John Collier (2006). Biological Information. Biological Theory 1 (3):221-223.
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  32. Gerd Müller, Manfred Laubichler, Peter Hammerstein, Linnda Caporael & Werner Callebaut (2006). D-618. Biological Theory 1 (4):331-332.
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  33. Gerd Müller, Manfred Laubichler, Peter Hammerstein, Linnda Caporael & Werner Callebaut (2006). The Problem of Origins. Biological Theory 1 (2):111-111.
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  34. Werner Callebaut (2005). Again, What the Philosophy of Biology is Not. Acta Biotheoretica 53 (2):93-122.
    There are many things that philosophy of biology might be. But, given the existence of a professional philosophy of biology that is arguably a progressive research program and, as such, unrivaled, it makes sense to define philosophy of biology more narrowly than the totality of intersecting concerns biologists and philosophers (let alone other scholars) might have. The reasons for the success of the “new” philosophy of biology remain poorly understood. I reflect on what Dutch and Flemish, and, more generally, European (...)
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  35. Werner Callebaut (2003). Lorenz's Philosophical Naturalism in the Mirror of Contemporary Science Studies. Ludus Vitalis 9 (20):26-55.
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  36. Werner Callebaut (1997). Introduction. Philosophica 60.
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  37. Peter Godfrey-Smith, Paul E. Griffiths, Huw Price, Werner Callebaut & Karola Stotz (1997). The Place of Function in a World of Mechanisms. Metascience 6 (2):7-31.
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  38. Werner Callebaut (1995). Réduction et explication mécaniste en biologie. Revue Philosophique De Louvain 93 (1):33-66.
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  39. Werner Callebaut (1995). The Normative Issue in Naturalistic Philosophy of Science. Theoria 10 (1):101-116.
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  40. Werner Callebaut (1994). Piaget Among the Evolutionary Naturalists. Philosophica 54.
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  41. Werner Callebaut & Ewald Vervaet (1994). Introduction. Philosophica 54.
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  42. William Bechtel & Werner Callebaut (1993). Taking the Naturalistic Turn, or, How Real Philosophy of Science is Done Conversations with William Bechtel ... [Et Al.]. [REVIEW] Monograph Collection (Matt - Pseudo).
     
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  43. Werner Callebaut (ed.) (1993). Taking the Naturalistic Turn, or How Real Philosophy of Science is Done. University of Chicago Press.
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  44. Tannelie Blom, Werner Callebaut & Ton Nijhuis (1989). Modalities and Counterfactuals in History and the Social Sciences: Some Preliminary Reflections. Philosophica 44.
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  45. Werner Callebaut & R. Pinxten (eds.) (1987). Evolutionary Epistemology: A Multiparadigm Program. Reidel.
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  46. Werner Callebaut (1986). Introduction. Philosophica 37.
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  47. Werner Callebaut (1980). Introduction. Philosophica 26.
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  48. Werner Callebaut (1980). Philosophical Aspects of Social Indicators and Quality of Life Research - Some Tentative Conclusions. Philosophica 26.
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  49. Werner Callebaut (1978). Practical Rationality From an Evolutionary Perspective. Philosophica 22.
  50. Werner Callebaut (1978). Social Indicators Research and the Theory of Collective Action. Philosophica 21:159-97.
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