Treating species as individuals and not classes has been crucial to the integration of evolutionary theory with modern systematics. Despite the theoretically important role the concept of individuality plays in modern phylogenetic systematics and in evolutionary theory more generally, many have been content to rely on common-sense intuitions about what counts as an individual. One of the most often cited intuitions is that individuals should be defined intrinsically. Unfortunately, common-sense intuitions like this one have proven to be inadequate for identifying (...) and characterizing historical individuals (like species). An examination of real-world biological examples shows that our common-sense intuitions are equally inadequate when applied to at least some biological organisms--the paradigm individuals. (shrink)

While most researchers who use evolutionary theory to investigatehuman nature especially human sexuality describe themselves as ``interactionists'', there is no clear consensus on the meaning of thisterm in this context. By interactionism most people in the fieldmean something like, both nature and nurture ``count'' in thedevelopment of human psychology and behavior. Nevertheless, themultidisciplinary nature of evolutionary psychology results in a widevariety of interpretations of this general claim. Today, mostdebates within evolutionary psychology about the innateness of agiven behavioral characteristic or over (...) its development turn as muchon which conception of ``innateness'' and ``interactionism'' theresearcher holds as on any empirical data they might derive. (shrink)

Over the past several years, various operational definitions of gender have been used in studies of gender conformity in homosexual males. The goal of these studies is to demonstrate that childhood gender nonconformity (CGN) is either the proximate cause of adult homosexuality or an intermediate step in a biologically mediated process. The hypothesis of a causal connection between the development of gender and sexual orientation is embedded within the context of a biological (evolutionary) understanding of human behavior. Thus, testing the (...) hypothesis of a causal connection between CGN and sexuality requires a concept of gender that is compatible with the basic principles of biological causation and our current understanding of evolutionary processes. I will argue that the concepts of gender used in the attempt to demonstrate a causal connection between CGN and sexual orientation are inappropriate because they provide no uniform, consistent method for identifying and measuring the biologically significant components of gender. I will also argue that the concept of gender that does emerge from these studies suggests an hypothesis about the connection between sexuality and gender that is not consistent with the cross-gendered theory of the etiology of homosexuality. (shrink)

Species serve as both the basic units of macroevolutionary studies and as the basic units of taxonomic classification. In this paper I argue that the taxa identified as species by the Phylogenetic Species Concept (Mishler and Brandon 1987) are the units of biological organization most causally relevant to the evolutionary process but that such units exist at multiple levels within the hierarchy of any phylogenetic lineage. The PSC gives us no way of identifying one of these levels as the privileged (...) level on which taxonomic classifications can be based. (shrink)

Sober (1992) has recently evaluated Brandon's (1982, 1990; see also 1985, 1988) use of Salmon's (1971) concept of screening-off in the philosophy of biology. He critiques three particular issues, each of which will be considered in this discussion.

This volume reaches beyond the controversy surrounding the teaching and learning of evolution in the United States, specifically in regard to the culture, politics, and beliefs found in the Southeast. The editors argue that despite a deep history of conflict in the region surrounding evolution, there is a wealth of evolution research taking place—from biodiversity in species to cultural evolution and human development. In fact, scientists, educators, and researchers from around the United States have found their niche in the South, (...) where biodiversity is high, culture runs deep, and the pace is just a little bit slower. (shrink)

This book takes readers on a fascinating journey to the very heart of Tantra: its key teachings, foundational lineages, and transformative practices. Since the West's discovery of Tantra 100 years ago, there has been considerable fascination, speculation, and more than a little misinformation about this spiritual movement. Now, for the first time in the English language, Tantra Illuminated presents an accessible introduction to this sacred tradition that began 1,500 years ago, in the far north of India. The book uses translations (...) from primary Sanskrit sources, offers a profound look at spiritual practice, and reveals Tantra's rich history and powerful teachings. (shrink)

Between Sickness and Health is about illness rather than disease, and recovery rather than cure. The book argues that illness is an experience, represented by the feeling that 'I am not myself'. From the book's phenomenological point of view, feelings of illness cannot be 'unreal' or 'fake', whatever their biological basis, nor need they be categorised as 'physical', 'psychosomatic' or 'psychiatric'. The book challenges the disease-centred ethos of medicine and medical education. It demonstrates that a clearer conception of illness, as (...) distinct from disease, is therapeutic. The feeling that 'I am once again myself' can return, in some degree, whatever state the body is in. Resilience becomes more available when it is seen as a set of personal skills that can be developed, rather than as an inborn trait. Possibilities of wellness are enhanced by recognising that medical and other therapies can either support or impede recovery, as can human relationships and the socio-political environment. The book's many clinical examples are drawn from the author's broad experience as a neurologist, rehabilitation physician and systemic family therapist. Between Sickness and Health will be useful for students, practitioners and academics, and also for anyone who has been or might one day be ill. (shrink)

Originally published in 1972, Should Trees Have Standing? was a rallying point for the then burgeoning environmental movement, launching a worldwide debate on the basic nature of legal rights that reached the U.S. Supreme Court. Now, in the 35th anniversary edition of this remarkably influential book, Christopher D. Stone updates his original thesis and explores the impact his ideas have had on the courts, the academy, and society as a whole. At the heart of the book is an eminently (...) sensible, legally sound, and compelling argument that the environment should be granted legal rights. For the new edition, Stone explores a variety of recent cases and current events--and related topics such as climate change and protecting the oceans--providing a thoughtful survey of the past and an insightful glimpse at the future of the environmental movement. This enduring work continues to serve as the definitive statement as to why trees, oceans, animals, and the environment as a whole should be bestowed with legal rights, so that the voiceless elements in nature are protected for future generations. (shrink)

MutL family proteins contain an N‐terminal ATPase domain (NTD), an unstructured interdomain linker, and a C‐terminal domain (CTD), which mediates constitutive dimerization between subunits and often contains an endonuclease active site. Most MutL homologs direct strand‐specific DNA mismatch repair by cleaving the error‐containing daughter DNA strand. The strand cleavage reaction is poorly understood; however, the structure of the endonuclease active site is consistent with a two‐ or three‐metal ion cleavage mechanism. A motif required for this endonuclease activity is present in (...) the unstructured linker of Mlh1 and is conserved in all eukaryotic Mlh1 proteins, except those from metamonads, which also lack the almost absolutely conserved Mlh1 C‐terminal phenylalanine‐glutamate‐arginine‐cysteine (FERC) sequence. We hypothesize that the cysteine in the FERC sequence is autoinhibitory, as it sequesters the active site. We further hypothesize that the evolutionary co‐occurrence of the conserved linker motif with the FERC sequence indicates a functional interaction, possibly by linker motif‐mediated displacement of the inhibitory cysteine. This role is consistent with available data for interactions between the linker motif with DNA and the CTDs in the vicinity of the active site. (shrink)

We have only limited awareness of the system by which we control our actions and this limited awareness does not seem to be concerned with the control of action. Awareness of choosing one action rather than another comes after the choice has been made, while awareness of initiating an action occurs before the movement has begun. These temporal differences bind together in consciousness the intention to act and the consequences of the action. This creates our sense of agency. Activity in (...) the anterior cingulate cortex and medial prefrontal cortex is associated with awareness of our own actions and also occurs when we think about the actions of others. I propose that the mechanism underlying awareness of how our own intentions lead to actions can also be used to represent the intentions that underlie the actions of others. This common system enables us to communicate mental states and thereby share our experiences. (shrink)

1 Boolean retrieval 1 2 The term vocabulary and postings lists 19 3 Dictionaries and tolerant retrieval 49 4 Index construction 67 5 Index compression 85 6 Scoring, term weighting and the vector space model 109 7 Computing scores in a complete search system 135 8 Evaluation in information retrieval 151 9 Relevance feedback and query expansion 177 10 XML retrieval 195 11 Probabilistic information retrieval 219 12 Language models for information retrieval 237 13 Text classification and Naive Bayes 253 (...) 14 Vector space classification 289 15 Support vector machines and machine learning on documents 319 16 Flat clustering 349 17 Hierarchical clustering 377 18 Matrix decompositions and latent semantic indexing 403 19 Web search basics 421 20 Web crawling and indexes 443 21 Link analysis 461.. (shrink)

Environmental ethics has reached a certain level of maturity; further significant advances require reexamining its status within the larger realm of moral philosophy. It could aim to extend to nonhumans one of the familiar sets of principles subject to appropriate modifications; or it could seek to break away and put forward its own paradigm or paradigms. Selecting the proper course requires as the most immediate mission exploring the formal requirements of an ethical system. In general, are there constraints against bringing (...) our moral relations with different sorts of things under different mIes of govemance? In particular, how much independence can an environmental ethic (or ethics) aim to have? (shrink)

This paper presents the first use of a computational model of natural logic—a system of logical inference which operates over natural language—for textual inference. Most current approaches to the PAS- CAL RTE textual inference task achieve robustness by sacrificing semantic precision; while broadly effective, they are easily confounded by ubiquitous inferences involving monotonicity. At the other extreme, systems which rely on first-order logic and theorem proving are precise, but excessively brittle. This work aims at a middle way. Our system finds (...) a low-cost edit sequence which transforms the premise into the hypothesis; learns to classify entailment relations across atomic edits; and composes atomic entailments into a top-level entailment judgment. We provide the first reported results for any system on the FraCaS test suite. We also evaluate on RTE3 data, and show that hybridizing an existing RTE system with our natural logic system yields significant performance gains. (shrink)

I wish to present a codi cation of syntactic approaches to dealing with ergative languages and argue for the correctness of one particular approach, which I will call the Inverse Grammatical Relations hypothesis.1 I presume familiarity with the term `ergativity', but, brie y, many languages have ergative case marking, such as Burushaski in (1), in contrast to the accusative case marking of Latin in (2). More generally, if we follow Dixon (1979) and use A to mark the agent-like argument of (...) a transitive verb, O to mark the patient-like argument of a transitive verb, and S to mark the single argument of an intransitive verb, then we can call ergative any subsystem of a language that groups S and O in contrast to A, as shown in (3). (shrink)

We propose a model of natural language inference which identifies valid inferences by their lexical and syntactic features, without full semantic interpretation. We extend past work in natural logic, which has focused on semantic containment and monotonicity, by incorporating both semantic exclusion and implicativity. Our model decomposes an inference problem into a sequence of atomic edits linking premise to hypothesis; predicts a lexical semantic relation for each edit; propagates these relations upward through a semantic composition tree according to properties of (...) intermediate nodes; and joins the resulting semantic relations across the edit sequence. A computational implementation of the model achieves 70% accuracy and 89% precision on the FraCaS test suite. Moreover, including this model as a component in an existing system yields significant performance gains on the Recognizing Textual Entailment challenge. (shrink)

This paper proposes a new architecture for textual inference in which finding a good alignment is separated from evaluating entailment. Current approaches to semantic inference in question answering and textual entailment have approximated the entailment problem as that of computing the best alignment of the hypothesis to the text, using a locally decomposable matching score. While this formulation is adequate for representing local (word-level) phenomena such as synonymy, it is incapable of representing global interactions, such as that between verb negation (...) and the addition/removal of qualifiers, which are often critical for determining entailment. We propose a pipelined approach where alignment is followed by a classification step, in which we extract features representing high-level characteristics of the entailment problem, and give the resulting feature vector to a statistical classifier trained on development data. (shrink)

Skyrms has pointed out differences between the results of rational choice theory and evolutionary game theory. This commentary argues that there is a great deal of agreement on the Nash Bargaining Solution, which maximizes the product of player payoffs, in both rational-choice-based and evolution-based theories of equilibrium selection. While evolutionary game theory has the potential to explain how we arrive at the behavioural rules that govern what we do, realistic models will require calibration through laboratory experiments. Indeed, experimental evidence strongly (...) supports the Nash Bargaining Solution. (shrink)

Future practitioners of sustainable agriculture and agroecology must have the capacity to address the wicked problems in the food system to make progress toward sustainability. Undergraduate sustainable agriculture students from a variety of backgrounds may struggle with the question, is the challenging and complex work of addressing wicked problems of agroecology for me? Our case study investigated sociocultural tensions associated with identity encountered when wicked problems teaching units were integrated into the Advanced Practices of Sustainable Agriculture course at a large, (...) Midwestern Land Grant University. The research and course employed a four-part framework that focused on attending to individual needs and identities, facilitating practice-based and community-based learning, engaging in problems situated in regional contexts, and supporting awareness of local and global political and ecological issues. Researchers used a community of practice theoretical lens, and focused on the sociocultural tensions that may have impacted individual and community identity formation. Two wicked problems teaching units are described by drawing upon documentation and audio recordings from planning meetings, course sessions, student and instructor interviews, and course artifacts. Vignettes were constructed to situate four interrelated types of sociocultural tensions encountered by instructors and students. These tensions reflected forces at the individual, community, local, and global levels which interact to influence learners’ capacity to become full participants in sustainable agriculture. The study fills a gap related to affective dimensions of learning like identity in agroecology education. Dilemmas and implications related to identity, pedagogy, and epistemology are discussed. (shrink)

The Quaestiones super Physica Aristotelis traditionally attributed to Iohannes Canonicus survive in over 35 manuscripts and at least 8 printings from 1475 to 1520. Yet historians have disagreed about the century, the place of origin, the name and the institutional position of the author. This brief paper combines old and new evidence proving that the text was authored by an Augustinian Canon Regular of the Cathedral of Tortosa named Francesc Marbres, a Catalan from Barcelona, while he was Master of Arts (...) at the University of Toulouse around 1330. (shrink)

We propose an approach to natural language inference based on a model of natural logic, which identifies valid inferences by their lexical and syntactic features, without full semantic interpretation. We greatly extend past work in natural logic, which has focused solely on semantic containment and monotonicity, to incorporate both semantic exclusion and implicativity. Our system decomposes an inference problem into a sequence of atomic edits linking premise to hypothesis; predicts a lexical entailment relation for each edit using a statistical classifier; (...) propagates these relations upward through a syntax tree according to semantic properties of intermediate nodes; and composes the resulting entailment relations across the edit sequence. We evaluate our system on the FraCaS test suite, and achieve a 27% reduction in error from previous work. We also show that hybridizing an existing RTE system with our natural logic system yields significant gains on the RTE3 test suite. (shrink)

We present a system for deciding whether a given sentence can be inferred from text. Each sentence is represented as a directed graph (extracted from a dependency parser) in which the nodes represent words or phrases, and the links represent syntactic and semantic relationships. We develop a learned graph matching model to approximate entailment by the amount of the sentence’s semantic content which is contained in the text. We present results on the Recognizing Textual Entailment dataset (Dagan et al., 2005), (...) and show that our approach outperforms Bag- Of-Words and TF-IDF models. (shrink)

Christopher Frith is a research professor at the Functional Imaging Laboratory of the Wellcome Department of Imaging Neuroscience at University College, London. He explores, experimentally, using the techniques of functional brain imaging, the relationship between human consciousness and the brain. His research focuses on questions pertaining to perception, attention, control of action, free will, and awareness of our own mental states and those of others. As the following discussion makes clear, Frith investigates brain systems involved in the choice of (...) one action over another and in the understanding of other people. Such investigations are aimed at understanding brain basis of autism and schizophrenia. In his widely cited study of schizophrenia, The Cognitive Neuropsychology of Schizophrenia , Frith argues that many of the positive symptoms of schizophrenia, such as delusions of control, auditory hallucinations, and thought insertion, involve problems of self-monitoring. Patients, in effect, lose track of their own intentions and mistakenly attribute agency for their own actions to someone else. Frith employs models of motor control, involving comparator mechanisms and efference copy, not only to explain delusions that involve movement, but also to develop a neurocognitive explanation of delusional cognition. (shrink)

Mechanisms of selective attention are vital for coherent perception and action. Recent advances in cognitive neuroscience have yielded key insights into the relationship between neural mechanisms of attention and eye movements, and the role of frontal and parietal brain regions as sources of attentional control. Here we explore the growing contribution of reversible neurodisruption techniques, including transcranial magnetic stimulation and microelectrode stimulation, to the cognitive neuroscience of spatial attention. These approaches permit unique causal inferences concerning the relationship between neural processes (...) and behaviour, and have revealed fundamental mechanisms of attention in the human and animal brain. We conclude by suggesting that further advances in the neuroscience of attention will be facilitated by the combination of neurodisruption techniques with established neuroimaging methods. (shrink)

gloria evangelina anzaldúa has been hailed as one of most important cultural theorists of the past fifty years. Her work, especially her groundbreaking Borderlands/La Frontera: The New Mestiza, continues to animate many contemporary discourses, especially those concerned with cultural and linguistic hybridity, intersectionality, and women of color feminism. Yet one may ask: What is Anzaldúa's distinctive contribution to contemporary discourses of spirituality and religion? In a 1993 interview, Anzaldúa herself lays bare the relative inattention that critics have given to her (...) understanding of spirituality: One of the things that doesn't get talked about is the connection between body... (shrink)