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  1. A Dual Decomposition Strategy of Both Microbial and Phenotypic Components for a Better Understanding of Causal Claims.Gregor P. Greslehner & Maël Lemoine - 2020 - Biology and Philosophy 35 (1):1.
    In our commentary on Lynch et al.’s target paper, we focus on decomposition as a research strategy. We argue that not only the presumptive microbial causes but also their supposed phenotypic effects need to be decomposed relative to each other. Such a dual decomposition strategy ought to improve the way in which causal claims in microbiome research can be made and understood.
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  • How Causal Are Microbiomes? A Comparison with the Helicobacter Pylori Explanation of Ulcers.Kate E. Lynch, Emily C. Parke & Maureen A. O’Malley - 2019 - Biology and Philosophy 34 (6):62.
    Human microbiome research makes causal connections between entire microbial communities and a wide array of traits that range from physiological diseases to psychological states. To evaluate these causal claims, we first examine a well-known single-microbe causal explanation: of Helicobacter pylori causing ulcers. This apparently straightforward causal explanation is not so simple, however. It does not achieve a key explanatory standard in microbiology, of Koch’s postulates, which rely on manipulations of single-microorganism cultures to infer causal relationships to disease. When Koch’s postulates (...)
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  • Have Causal Claims About the Gut Microbiome Been Over‐Hyped?Pierrick Bourrat - 2018 - Bioessays 40 (12):1800178.