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Formalization and the Meaning of “Theory” in the Inexact Biological Sciences

  • Thematic Issue Article: The Meaning of "Theory" in Biology
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Abstract

Exact sciences are described as sciences whose theories are formalized. These are contrasted to inexact sciences, whose theories are not formalized. Formalization is described as a broader category than mathematization, involving any form/content distinction allowing forms, e.g., as represented in theoretical models, to be studied independently of the empirical content of a subject-matter domain. Exactness is a practice depending on the use of theories to control subject-matter domains and to align theoretical with empirical models and not merely a state of a science. Inexact biological sciences tolerate a degree of “mismatch” between theoretical and empirical models and concepts. Three illustrations from biological sciences are discussed in which formalization is achieved by various means: Mendelism, Weismannism, and Darwinism. Frege’s idea of a “conceptual notation” is used to further characterize the notion of a form/content distinction.

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Notes

  1. For the ICZN, see http://www.nhm.ac.uk/hosted-sites/iczn/code/. For the ICBN, see http://ibot.sav.sk/icbn/main.htm. Consulted July 20, 2012.

  2. Compare Gould’s interpretation of Thompson as a theorist in his foreword to the (1992) Cambridge edition with Bonner’s more ambivalent introduction to the same edition. The former calls Thompson’s work a contribution to theoretical biology while the latter states that Thompson “was quite satisfied with a mathematical description or a physical analogy” (Thompson 2000, p. xv, emphasis added).

  3. A use is indirect if it is a change of use or “repurposing” from another. My belt buckle has a direct use in holding up my trousers, but an indirect use as a bottle opener because it happens that its structure is suited to that function as well, and I sometimes repurpose my belt buckle while traveling if I’ve forgotten my Swiss Army knife, which carries my regular bottle opener.

  4. On the mediating role of models, see Morgan and Morrison (1999).

  5. “Match” is used here to avoid more specific connotations of correspondence, isomorphism, or even similarity. I prefer the imagery of alignment, as in making railroad tracks laid from the west and from the east align in the middle so that trains can run smoothly in either direction. Alignment of models is like that: the aim is to connect phenomena and concepts smoothly. As Winsberg (2006, 2010) has argued, when models of different domains don’t align, scientists are willing to engage in various ad hoc “handshaking” arrangements to keep the trains running anyway. I think his points apply to models within domains of inexact sciences as well.

  6. Characterization of theory in terms of what theory does, materially, in relation to empirical content, has been emphasized recently by Love (2008 and 2012, this issue) and Brigandt (2010).

  7. On theory presentation, see van Fraassen (1980, p. 44); see also Griesemer (1984), and further discussion and elaboration in Love (2012, this issue).

  8. On challenges to the semantic view, see e.g. Morrison (2007, 2011); for a defense of the semantic view, see Thompson (2007). Critics make the compelling point that mismatch in the exact sciences appears to undermine the semantic view of theories. The exact sciences control their subject-matter domains precisely by means of formalized theories that delimit what count as proper subjects. The truth of formalized theories of a domain controlled by them is all too easy, since an object can belong to the domain only if it satisfies the theory. Hence Giere (1988; Giere et al. 2006) describes the role of theory as one of definition of a class of models. The problem arises for the semantic conception that scientific theories are intended to be true of their empirical subject matter as well, yet empirical contents of phenomena are related to models by relations of idealization and abstraction that, strictly speaking, render them false (Wimsatt 1987). On the semantic view, the theoretical models that precisely satisfy theories in the logical, Tarskian sense of model theory, cannot also be correct representations of empirical phenomena because empirical models must idealize and abstract from the phenomena in order to be useful representations. Empirical models, moreover, are often explicitly and intentionally false (i.e., partial, inaccurate) descriptions of phenomena, and often the models of a collection are intentionally designed to contradict one another as part of a research program to discover robust theorems (Levins 1966; Wimsatt 1987, 2007). Thus, if theoretical models satisfy theories and at the same time are expected to be idealized, false descriptions of empirical phenomena, even the best theories would have to aim at being both true and untrue of the empirical phenomena that the models describe. On the “twilight” of the perfect model model of science as aiming at exact natural laws that truly represent nature, see Teller (2001).

  9. Perini (2004), for example, argues that visual representations can bear truth, hence diagrams can function as theoretical models in the senses explored here.

  10. I resist the implication of the term “theorizing” of a one-way path from phenomena to theories—turning something that is not theory into something that is. I do not presuppose that is the only or even the primary path of “theory-ing.”

  11. Frege’s logicism is usually contrasted with the psychologism of Boole and other nineteenth century logicians. If psychologism is a form of “naturalism” about the subject domain of mathematics, Frege’s logicist program looks to be anti-naturalistic about mathematics and, in my extension of his use of conceptual notation to the idea of formalization in the natural sciences, anti-naturalistic about science. A Fregean (in my sense), however, can be pragmatic about conceptual notation (perspicuity is a pragmatic virtue) while logicist about theory (in Frege's case, about the logical theory of mathematics). Thus, Frege can be opposed to psychologism in mathematics and an anti-naturalist about mathematics and at the same time, pragmatic in his practice of logic. (Everyone is pragmatic about their own practice, even if logicists and reductionists deny pragmatism to everyone else in their practices!) So, one must distinguish the pragmatic role of an effective notation for logic from the role (logicist or otherwise) of theory about a subject-matter domain. Conceptual notations are means of formalizing theory and thus facilitators of formalism about theory, yet one's stance on theory can be autonomous from one's stance on notation.

  12. For an attempt to relate models of mechanism to theories, see Griesemer (2011a, b) and Love (2012, this issue).

  13. Love (2012, this issue) considers attempts to retain population genetics as a formal core of an exact science in the face of EvoDevo complications. Theoretical geneticists have also become interested in attempting to bring epigenetics under the umbrella of formal population genetics—e.g. Slatkin (2009); cf. Tal et al. (2010).

  14. See also Godfrey-Smith (2009) for a similar formalization around the idea of “Darwinian population.”

  15. “Investigative experience” is intended as a generalization of Suppes’ (1960, 1962) notion of “experimental experience,” allowing for a distinction between observation and experiment on the one hand, and experimental and theoretical investigations as empirical experiences on the other. For an “investigative practice” approach to science, see Waters (2008).

  16. On notational systems in general, see Goodman (1976, Chap. 4).

  17. Phenomena deemed similar enough to phenomena already in the domain are also counted as in the domain. Phenomena investigated because they result as products of prior investigations are also counted as in the domain. Phenomena that fit empirical models developed to describe other phenomena are counted as in the domain. This is not to say that exact sciences escape the politics of historical tradition, interest and patronage, but the locus shifts at least partially to theory and theory-ing from empirical practice.

  18. Thanks to Massimo Pigliucci for this last reference.

References

  • Brandon R (1990) Adaptation and environment. Princeton University Press, Princeton

    Google Scholar 

  • Brigandt I (2010) Beyond reduction and pluralism: toward an epistemology of explanatory integration in biology. Erkenntnis 73:295–311

    Article  Google Scholar 

  • Bulmer M (1985) The mathematical theory of quantitative genetics. Oxford University Press, New York

    Google Scholar 

  • Buss L (1987) The evolution of individuality. Princeton University Press, Princeton

    Google Scholar 

  • Calcott B, Sterelny K (eds) (2011) The major transitions in evolution revisited. MIT Press, Cambridge

    Google Scholar 

  • Darwin C ([1838] 1987) E Notebook. In: Barrett P, Gautrey P, Herbert S, Kohn D, Smith S (eds) Charles Darwin’s notebooks, 1836–1844: geology, transmutation of species, metaphysical enquiries. Cambridge University Press, Cambridge, pp 395–455

  • Darwin C ([1859] 1964) On the origin of species. Facsimile of the 1st edition. Harvard University Press, Cambridge, MA

  • Dawkins R (1982) The extended phenotype. Oxford University Press, New York

    Google Scholar 

  • Eldredge N, Cracraft J (1980) Phylogenetic patterns and the evolutionary process: method and theory in comparative biology. Columbia University Press, New York

  • Felsenstein J (2004) Inferring phylogenies. Sinauer, Sunderland

    Google Scholar 

  • Frege G ([1879] 1972) Begriffschrift. Translated as “Conceptual notation”. In: Bynum TW (trans) Conceptual notation and related articles. Clarendon Press, Oxford, pp 101–203

  • Frege G ([1882a] 1972) Über die wissenschaftliche Berechtigung einer Begriffsschrift. Translated as “On the scientific justification of a conceptual notation”. In: Bynum TW (trans) Conceptual notation and related articles. Clarendon Press, Oxford, pp 83–89

  • Frege G ([1882b] 1972) “Über den Zweck der Begriffsschrift,” translated as “On the aim of the ‘Conceptual Notation.’” In: Bynum TW (trans) Conceptual notation and related articles. Clarendon Press, Oxford, pp 90–100

  • Galton F (1876) A theory of heredity. J Anthropol Inst Great Brit Ireland 5:329–348

    Article  Google Scholar 

  • Gánti T (2003) The principles of life, with a commentary by James Griesemer and Eörs Szathmáry. Vekerdi L, Czaran E, Muller V, trans. Oxford University Press, Oxford

  • Giere RN (1988) Explaining science: a cognitive approach. University of Chicago Press, Chicago

    Book  Google Scholar 

  • Giere RN (2006) Scientific perspectivism. University of Chicago Press, Chicago

    Book  Google Scholar 

  • Giere RN, Bickle J, Mauldin R (2006) Understanding scientific reasoning, 5th edn. Wadsworth, Belmont

    Google Scholar 

  • Gilbert SF (1985) Developmental biology, 1st edn. Sinauer, Sunderland

    Google Scholar 

  • Gillespie J (2004) Population genetics: a concise guide, 2nd edn. Johns Hopkins University Press, Baltimore

    Google Scholar 

  • Godfrey-Smith P (2009) Darwinian populations and natural selection. Oxford University Press, New York

    Google Scholar 

  • Goodman N (1976) Languages of art, 2nd edn. Hackett, Indianapolis

    Google Scholar 

  • Griesemer J (1984) Presentations and the status of theories. In: Asquith PD, Kitcher P (eds) PSA 1984, vol. 1. Philosophy of Science Association, East Lansing, MI, pp 102–114

  • Griesemer J (1990) Modeling in the museum: on the role of remnant models in the work of Joseph Grinnell. Biol Philos 5:3–36

    Article  Google Scholar 

  • Griesemer J (2000) Development, culture and the units of inheritance. Philos Sci 67:S348–S368

    Article  Google Scholar 

  • Griesemer J (2007) Tracking organic processes: representations and research styles in classical embryology and genetics. In: Laubichler MD, Maienschein J (eds) From embryology to EvoDevo: a history of developmental evolution. MIT Press, Cambridge, pp 375–433

    Google Scholar 

  • Griesemer J (2011a) Heuristic reductionism and the relative significance of epigenetic inheritance in evolution. In: Hallgrímsson B, Hall BK (eds) Epigenetics: linking genotype and phenotype in development and evolution. University of California Press, Los Angeles, pp 14–40

    Google Scholar 

  • Griesemer J (2011b) The relative significance of epigenetic inheritance in evolution: some philosophical considerations. In: Gissis S, Jablonka E (eds) Transformations of Lamarckism: from subtle fluids to molecular biology. MIT Press, Cambridge, pp 331–344

    Google Scholar 

  • Griesemer J, Wimsatt WC (1989) Picturing Weismannism: a case study of conceptual Evolution. In: Ruse M (ed) What the philosophy of biology is: essays for David Hull. Kluwer, Dordrecht, pp 75–137

    Chapter  Google Scholar 

  • Hagen J (2003) The statistical frame of mind in systematic biology from quantitative zoology to biometry. J Hist Biol 36:353–384

    Article  Google Scholar 

  • Hastings A (1997) Population biology: concepts and models. Springer, New York

    Book  Google Scholar 

  • Hull DL (1988) Science as a process. University of Chicago Press, Chicago

    Google Scholar 

  • Kuhn TS (1970) The structure of scientific revolutions, 2nd edn. University of Chicago Press, Chicago

    Google Scholar 

  • Levins R (1966) The strategy of model building in population biology. Am Sci 54:421–431

    Google Scholar 

  • Lewontin RC (1970) The units of selection. Annu Rev Ecol Syst 1:1–17

    Article  Google Scholar 

  • Lloyd EA (1994) The structure and confirmation of evolutionary theory. Princeton University Press, Princeton

    Google Scholar 

  • Love AC (2008) Explaining evolutionary innovation and novelty: criteria of adequacy and multidisciplinary prerequisites. Philos Sci 75:874–886

    Article  Google Scholar 

  • Love AC (2012) Theory is as theory does: scientific practice and theory structure in biology. Biol Theory 7. doi:10.1007/s13752-012-0046-2

  • Maienschein J (1978) Cell lineage, ancestral reminiscence, and the biogenetic law. J Hist Biol 11:129–158

    Article  Google Scholar 

  • Maynard Smith J (1965) The theory of evolution, 2nd edn. Penguin, London

    Google Scholar 

  • Maynard Smith J, Szathmáry E (1995) The major transitions in evolution. Freeman (Spektrum), Oxford

  • Mendel G ([1866] 1965) Experiments in plant hybridization. Royal Horticultural Society of London (trans). Harvard University Press, Cambridge, MA

  • Morgan M, Morrison M (1999) Models as mediators: perspectives on natural and social science. Cambridge University Press, Cambridge

    Book  Google Scholar 

  • Morrison M (2007) Where have all the theories gone? Philos Sci 74:195–228

    Article  Google Scholar 

  • Morrison M (2011) One phenomenon, many models: inconsistency and complementarity. Stud Hist Philos Sci 42:342–351

    Article  Google Scholar 

  • Nagel E, Newman JR (1958) Gödel’s proof. New York University Press, New York

    Google Scholar 

  • Nogler G (2006) The lesser-known Mendel: his experiments on Hieracium. Genetics 172:1–6

    Google Scholar 

  • Perini L (2004) The truth in pictures. Philos Sci 72:262–285

    Article  Google Scholar 

  • Slatkin M (2009) Epigenetic inheritance and the missing heritability problem. Genetics 182:845–850

    Article  Google Scholar 

  • Suppes P (1960) A comparison of the meaning and uses of models in mathematics and the empirical sciences. Synthese 12:287–301

    Article  Google Scholar 

  • Suppes P (1962) Models of data. In: Nagel E, Suppes P, Tarski A (eds) Logic, methodology and philosophy of science. Stanford University Press, Stanford, pp 252–261

    Google Scholar 

  • Suppes P (1967) What is a scientific theory? In: Morgenbesser S (ed) Philosophy of science today. Basic Books, New York, pp 55–67

    Google Scholar 

  • Tal O, Kisdi E, Jablonka E (2010) Epigenetic contribution to covariance between relatives. Genetics 184:1037–1050

    Article  Google Scholar 

  • Teller P (2001) Twilight of the perfect model model. Erkenntnis 55:393–415

    Article  Google Scholar 

  • Thompson DW (2000) On growth and form. Cambridge University Press (Canto), New York

  • Thompson P (2007) Formalisations of evolutionary biology. In: Matthen M, Stephens C (eds) Philosophy of biology. Elsevier, Amsterdam, pp 485–523

    Chapter  Google Scholar 

  • van Fraassen B (1980) The scientific image. Clarendon Press, Oxford

    Book  Google Scholar 

  • Wagner G (2010) The measurement theory of fitness. Evolution 64:1358–1376

    Google Scholar 

  • Walter H (1913) Genetics. MacMillan, New York

    Google Scholar 

  • Waters CK (2008) How practical know-how contextualizes theoretical knowledge: exporting causal knowledge from laboratory to nature. Philos Sci 75:707–719

    Article  Google Scholar 

  • Weismann A (1893) The Germ-plasm, a theory of heredity. In: Parker W, Ronnfeldt H (trans). Scribner’s, New York. Orig. Das Keimplasma, eine theorie der Vererbung, Jena, Gustav Fischer

  • Whitman CO (1887) A contribution to the history of the germ-layers in clepsine. J Morphol 1:105–182

    Article  Google Scholar 

  • Wilson EB (1896) The cell in development and inheritance. MacMillan, London

    Book  Google Scholar 

  • Wimsatt WC (1980) Reductionistic research strategies and their biases in the units of selection controversy. In: Nickles T (ed) Scientific discovery, vol II., Historical and scientific case studies Reidel, Dordrecth, pp 213–259

    Chapter  Google Scholar 

  • Wimsatt WC (1987) False models as means to truer theories. In: Nitecki M, Hoffman A (eds) Neutral models in biology. Oxford University Press, London, pp 23–55

    Google Scholar 

  • Wimsatt WC (2007) Re-engineering philosophy for limited beings: piecewise approximations to reality. Harvard University Press, Cambridge

    Google Scholar 

  • Wimsatt WC, Griesemer J (2007) Reproducing entrenchments to scaffold culture: the central role of development in cultural evolution. In: Sansom R, Brandon R (eds) Integrating evolution and development: from theory to practice. MIT Press, Cambridge, pp 227–323

    Google Scholar 

  • Winsberg E (2006) Handshaking your way to the top: simulation at the nanoscale. Philos Sci 73:582–594

    Article  Google Scholar 

  • Winsberg E (2010) Science in the age of computer simulation. University of Chicago Press, Chicago

    Book  Google Scholar 

Download references

Acknowledgments

Thanks are due to workshop organizers Massimo Pigliucci, Werner Callebaut, and Kim Sterelny, workshop participants, and the Konrad Lorenz Institute for Evolution and Cognition Research. I thank Roberta Millstein, Elihu Gerson, and the workshop organizers for valuable comments on a previous version of the manuscript and Ken Waters for encouragement. Support of a UC Davis Herbert A. Young Society Deans’ Fellowship, 2011–2014, is gratefully acknowledged.

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Griesemer, J. Formalization and the Meaning of “Theory” in the Inexact Biological Sciences. Biol Theory 7, 298–310 (2013). https://doi.org/10.1007/s13752-012-0065-z

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