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The Trouble with Natural Genetic Engineering

James A. Shapiro: Evolution: A View from the 21st Century. FT Press Science, Upper Saddle River, NJ, 2011, 272 pp., $27.99 hbk, $27.99 ebook, ISBN 978-0-13-278093-3

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Notes

  1. JS uses the term “mechanistic” (and related terms) throughout the book without distinguishing between an epistemological and ontological meaning (for an analysis of this issue see Nicholson 2012). In this review I shall follow JS’s uncritical usage.

  2. JS uses the two terms interchangeably. One could argue that this is historically inadequate, given that “neo-Darwinism” is a much older expression referring to the position advocated by Weismann and others (Sapp 2003, p. 68). Nonetheless, I will again follow JS’s usage.

  3. JS uses the term “paradigm” rather informally. Once more, I will follow this informal usage, though I realize that it is fraught with problems (see, e.g., Callebaut 2010).

  4. One further point is that Shapiro talks about active cells employing their NGE capacities in order to “engineer” adaptive change, implying that cells can be considered agents and causes of change. I will focus on this crucial aspect of his argument below.

  5. A saltational process leading to the sudden emergence of new adaptations (or even species) was historically thought to provide an alternative to the Darwinian process based on the gradual emergence of adaptive complexity by selection (Gould 2002, esp. 143–144; Sapp 2003, p. 71).

  6. Note that teleology is understood here in an intrinsic (i.e., Aristotelian) sense. Only an extrinsic (i.e., Platonic) sense of teleology implies an external designer (see Lennox 1992). Hence, there is no link whatsoever between this form of teleology and intelligent design or creationism.

  7. However, sometimes JS seems to argue that even proteins possess sensing capabilities (pp. 13–14). If this is the case, then cells are not so special after all. Even subcellular components might be considered as the fundamental units of life, as the genuine biological atoms. (See Nicholson 2010 on the issue of biological atomism.)

References

  • Barberousse A, Morange M, Pradeu T (2009) Mapping the future of biology: evolving concepts and theories. Springer, Frankfurt

    Book  Google Scholar 

  • Bertalanffy LV (1952) Problems of life: an evaluation of modern biological and scientific thought. Harper, New York

    Google Scholar 

  • Cairns J (1998) Mutation and cancer: the antecedents to our studies of adaptive mutation. Genetics 148:1433–1440

    Google Scholar 

  • Cairns J, Overbaugh J, Miller S (1988) The origin of mutants. Nature 335:142

    Article  Google Scholar 

  • Callebaut W (2010) The dialectics of dis/unity in the evolutionary synthesis and its extensions. In: Pigliucci M, Müller GB (eds) Evolution: the extended synthesis. MIT Press, Cambridge, MA, pp 443–481

    Google Scholar 

  • Crick F (1970) Central Dogma of molecular biology. Nature 227:561–563

    Article  Google Scholar 

  • Danchin A (2009) Bacteria as computers making computers (Review article). FEMS Microbiol Rev 33:3–26

    Article  Google Scholar 

  • Dawkins R (1986) The blind watchmaker. Longmans, London

    Google Scholar 

  • Dennett DC (1995) Darwin’s dangerous idea. Simon & Schuster, New York

    Google Scholar 

  • Gatherer D (2010) So what do we really mean when we say that systems biology is holistic? BMC Syst Biol 4:22

    Article  Google Scholar 

  • Gould SJ (2002) The structure of evolutionary theory. Belknap Press of Harvard University Press, Cambridge, MA

    Google Scholar 

  • Haldane JS (1931) The philosophical basis of biology. Hodder & Stoughton, London

    Google Scholar 

  • Jablonka E, Lamb M (1995) Epigenetic inheritance and evolution: the Lamarckian dimension. Oxford University Press, Oxford

    Google Scholar 

  • Keller EF (1992) Between language and science: the question of directed mutation in molecular genetics. Perspect Biol Med 35:292–306

    Google Scholar 

  • Keller EF (2012) Genes, genomes, and genomics. Biol Theory 6:xxx–xxx (Note to Springer: Published in this issue 6:2.)

  • Koonin EV (2009) Darwinian evolution in the light of genomics. Nucleic Acids Res 37:1011–1034

    Article  Google Scholar 

  • Lennox JG (1992) Teleology. In: Keller EF, Lloyd EA (eds) Keywords in evolutionary biology. Harvard University Press, Cambridge, MA, pp 324–333

  • Lewontin RC (1982) Organism and environment. In: Plotkin HC (ed) Learning, development, and culture. Wiley, New York, pp 151–170

    Google Scholar 

  • Lewontin RC (2000) The triple helix: gene, organism, and environment. Harvard University Press, Cambridge, MA

    Google Scholar 

  • Luria SE (1984) A slot machine, a broken test tube. Harper and Row, New York

    Google Scholar 

  • Lynch M (2007) The frailty of adaptive hypotheses for the origins of organismal complexity. Proc Natl Acad Sci Biol 104:8597–8604

    Article  Google Scholar 

  • Margulis L, Sagan D (2000) Sentient symphony. In: Bedau MA, Cleland CE (eds) The nature of life: classical and contemporary perspectives from philosophy and science. Cambridge University Press, Cambridge, pp 340–354

    Google Scholar 

  • Maynard Smith J, Szathmáry E (1995) The major transitions in evolution. Oxford University Press, Oxford

    Google Scholar 

  • Mayr E (2004) Happy birthday: 80 years of watching the evolutionary scenery. Science 305:46–47. http://www.sciencemag.org/content/305/5680/46.full

    Google Scholar 

  • Nicholson DJ (2010) Biological atomism and cell theory. Stud Hist Philos Biol Biomed Sci 41:202–211

    Google Scholar 

  • Nicholson DJ (2012) The concept of mechanism in biology. Stud Hist Philos Biol Biomed Sci 43:152–163

    Google Scholar 

  • Pigliucci M, Muller G (2010) Evolution: the extended synthesis. MIT Press, Cambridge

    Google Scholar 

  • Rosen R (1991) Life itself: a comprehensive inquiry into the nature, origin, and fabrication of life. Columbia University Press, New York

    Google Scholar 

  • Rosenberg SM (2001) Evolving responsively: adaptive mutation. Nat Rev Genet 2:504–515

    Article  Google Scholar 

  • Sapp J (2003) Genesis: the evolution of biology. Oxford University Press, New York

    Google Scholar 

  • Shapiro JA (1984) Observations on the formation of clones containing araB-lacZ cistron fusions. Molec Gen Genet 194:79–90

    Article  Google Scholar 

  • Shapiro JA (1997) A third way. Boston Rev 22(1):32–33

    Google Scholar 

  • Shapiro JA (2005) A 21st century view of evolution: genome system architecture, repetitive DNA, and natural genetic engineering. Gene 345:91–100

    Article  Google Scholar 

  • Watson JD, Myers RM, Caudy AA, Witkowsky JA (2006) Recombinant DNA. Freeman, New York

    Google Scholar 

Download references

Acknowledgements

I am profoundly grateful to Werner Callebaut, Dan Nicholson, and Maureen O’Malley for their extremely valuable comments and suggestions. I also thank the University of Santiago de Chile and the Chilean Government (Research Grant Fondecyt Iniciacion Investigacion No. 11110409) for all their support.

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Vecchi, D. The Trouble with Natural Genetic Engineering. Biol Theory 7, 80–88 (2013). https://doi.org/10.1007/s13752-012-0024-8

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