Biodynamic Ontology: Applying BFO in the Biomedical Domain

Abstract

Current approaches to formal representation in biomedicine are characterized by their focus on either the static or the dynamic aspects of biological reality. We here outline a theory that combines both perspectives and at the same time tackles the by no means trivial issue of their coherent integration. Our position is that a good ontology must be capable of accounting for reality both synchronically (as it exists at a time) and diachronically (as it unfolds through time), but that these are two quite different tasks, whose simultaneous realization is by no means trivial. The paper is structured as follows. We begin by laying out the methodological and philosophical background of our approach. We then summarize the structure and elements of the Basic Formal Ontology on which it rests, in particular the SNAP ontology of objects and the SPAN ontology of processes. Finally, we apply the general framework to the specific domain of biomedicine.

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2011-04-04

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References found in this work

New Work for a Theory of Universals.David K. Lewis - 1983 - Australasian Journal of Philosophy 61 (4):343-377.
New Work For a Theory of Universals.David Lewis - 1983 - In D. H. Mellor & Alex Oliver (eds.), Properties. Oxford University Press.
Parts: A Study in Ontology.Peter Simons - 1987 - Oxford, England: Clarendon Press.
On the Plurality of Worlds.Allen Stairs - 1988 - Philosophy and Phenomenological Research 49 (2):333-352.

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