Results for 'Alexei Evsikov'

313 found
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  1. The representation of protein complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.
    Representing species-specific proteins and protein complexes in ontologies that are both human and machine-readable facilitates the retrieval, analysis, and interpretation of genome-scale data sets. Although existing protin-centric informatics resources provide the biomedical research community with well-curated compendia of protein sequence and structure, these resources lack formal ontological representations of the relationships among the proteins themselves. The Protein Ontology (PRO) Consortium is filling this informatics resource gap by developing ontological representations and relationships among proteins and their variants and modified forms. Because (...)
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  2. The Protein Ontology: A structured representation of protein forms and complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...)
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  3. Protein-centric connection of biomedical knowledge: Protein Ontology research and annotation tools.Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei Evsikov, Hongzhan Huang, Barry Smith & Others - 2011 - In Proceedings of the 2nd International Conference on Biomedical Ontology. Buffalo, NY: NCOR. pp. 285-287.
    The Protein Ontology (PRO) web resource provides an integrative framework for protein-centric exploration and enables specific and precise annotation of proteins and protein complexes based on PRO. Functionalities include: browsing, searching and retrieving, terms, displaying selected terms in OBO or OWL format, and supporting URIs. In addition, the PRO website offers multiple ways for the user to request, submit, or modify terms and/or annotation. We will demonstrate the use of these tools for protein research and annotation.
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  4. A Fiduciary Argument Against Stakeholder Theory.Alexei M. Marcoux - 2003 - Business Ethics Quarterly 13 (1):1-24.
    Critics attack normative ethical stakeholder theory for failing to recognize the special moral status of shareholders that justifiesthe fiduciary duties owed to them at law by managers. Stakeholder theorists reply that there is nothing morally significant about shareholders that can underwrite those fiduciary duties. I advance an argument that seeks to demonstrate both the special moral status of shareholders in a firm and the concomitant moral inadequacy of stakeholder theory. I argue that (i) if some relations morally requirefiduciary duties, and (...)
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  5.  69
    A Counterintuitive Argument for Résumé Embellishment.Alexei M. Marcoux - 2006 - Journal of Business Ethics 63 (2):183-194.
    Applied ethicists say little about résumé embellishment. Presumably, this is so because résumé embellishment seems obviously wrong; an instance of ordinary lying, familiar moral prohibitions against which cover the case completely. Analysis of résumé embellishment merely as ordinary lying overlooks its collective action aspects. Taking account of those aspects and their implications, I argue on consequentialist grounds that, given some plausible background conditions, a limited form of résumé embellishment is morally permissible. This outcome is a particular instantiation of a more (...)
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  6.  31
    Memories with a blind mind: Remembering the past and imagining the future with aphantasia.Alexei J. Dawes, Rebecca Keogh, Sarah Robuck & Joel Pearson - 2022 - Cognition 227 (C):105192.
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  7.  52
    Freeman and Evan.Alexei M. Marcoux - 1999 - Business Ethics Quarterly 9 (2):207-224.
    We argue that the Rawlsian social contract argument advanced for stakeholder theory by R. Edward Freeman, writing alone and with William M. Evan, fails in three main ways. First, it is true to Rawls in neither form, nor purpose, nor the level of knowledge (or ignorance) required to motivate the veil of ignorance. Second, it fails to tailor the veil of ignorance to the fairness conditions that are required to solve the moral problem that Freeman and Evan set out to (...)
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  8.  20
    Evolution of the Modes of Systematization of Mathematical Knowledge.Alexei Barabashev - 2000 - In Emily Grosholz & Herbert Breger (eds.), The growth of mathematical knowledge. Boston: Kluwer Academic Publishers. pp. 315--329.
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  9. Ethics in robotics research: CERNA recommendations.Alexei Grinbaum & Raja Chatila - 2017 - IEEE Robotics and Automation Magazine (99):1-8.
    This article summarizes the recommendations concerning robotics as issued by the Commission for the Ethics of Research in Information Sciences and Technologies (CERNA), the French advisory commission for the ethics of information and communication technology (ICT) research. Robotics has numerous applications in which its role can be overwhelming and may lead to unexpected consequences. In this rapidly evolving technological environment, CERNA does not set novel ethical standards but seeks to make ethical deliberation inseparable from scientific activity. Additionally, it provides tools (...)
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  10.  59
    Business ethics.Alexei Marcoux - 2008 - Stanford Encyclopedia of Philosophy.
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  11.  24
    How device-independent approaches change the meaning of physical theory.Alexei Grinbaum - 2017 - Studies in History and Philosophy of Science Part B: Studies in History and Philosophy of Modern Physics 58:22-30.
  12.  38
    Nourishment and the Biosphere.Alexei A. Pokrovski & R. Scott Walker - 1979 - Diogenes 27 (107):120-127.
    “The world of life which is comprised of the lithosphere, the hydrosphere and the atmosphere”: this definition of the biosphere is not complete since it does not express the determining influence of living organisms on its composition, on its structure and on the processes of its continuing evolution. The part of living matter in the biosphere is relatively small (about 0.25%), but this part has a considerable influence on its structure.The biosphere should be considered as the universal source of all (...)
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  13.  10
    Biology of purinergic signalling: Its ancient evolutionary roots, its omnipresence and its multiple functional significance.Alexei Verkhratsky & Geoffrey Burnstock - 2014 - Bioessays 36 (7):697-705.
    The purinergic signalling system, which utilises ATP, related nucleotides and adenosine as transmitter molecules, appeared very early in evolution: release mechanisms and ATP‐degrading enzymes are operative in bacteria, and the first specific receptors are present in single cell eukaryotic protozoa and algae. Further evolution of the purinergic signalling system resulted in the development of multiple classes of purinoceptors, several pathways for release of nucleotides and adenosine, and a system of ectonucleotidases controlling extracellular levels of purinergic transmitters. The purinergic signalling system (...)
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  14.  48
    Protosemiosis: Agency with Reduced Representation Capacity.Alexei A. Sharov & Tommi Vehkavaara - 2015 - Biosemiotics 8 (1):103-123.
    Life has semiotic nature; and as life forms differ in their complexity, functionality, and adaptability, we assume that forms of semiosis also vary accordingly. Here we propose a criterion to distinguish between the primitive kind of semiosis, which we call “protosemiosis” from the advanced kind of semiosis, or “eusemiosis”. In protosemiosis, agents associate signs directly with actions without considering objects, whereas in eusemiosis, agents associate signs with objects and only then possibly with actions. Protosemiosis started from the origin of life, (...)
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  15.  33
    "My life is like a novel...": Kant Student Friedrich August Hahnrieder and his History.Alexei N. Krouglov - 2012 - Kant Studien 103 (2):242-253.
    The life story of Kant’s student F. A. Hahnrieder (1765/6–1829) provides us with new examples of the application of the categorical imperative. Kant has given his opinion about that. The biography of Hahnrieder suggests that Kant has not always insisted on the uniqueness of the interpretation of the categorical imperative. He has also admitted other, “paradoxical”, “unusual”, but not “fantastic” interpretations. Kant has even respected a radical interpretation of the categorical imperative. On the base of the archive data, numerous mistakes (...)
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  16. Byzantine church decoration and the great schism of 1054.Alexei Lidov - 1998 - Byzantion 68 (2):381-405.
    De nouveaux thèmes théologiques apparaissent dans le décor des églises byzantines vers le milieu du 11e siècle. Ils sont nés d'un programme spécifique probablement lié au schisme de 1054. L'A. étudie les thèmes liturgiques centraux de l'Eglise orthodoxe de cette époque en prêtant une attention particulière au symbolisme des thèmes et à la date de leur émergence au sein du décor de l'église comme par exemple la communion des apôtres, les évêques officiant, le Christ comme Grand Prêtre consacrant l'Eglise ou (...)
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  17.  13
    The Catapetasma of Hagia Sophia and the Phenomenon of Byzantine Installations.Alexei Lidov - 2014 - Convivium 1 (2):40-57.
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  18.  20
    Who are the Stakeholders?Alexei M. Marcoux - 1998 - Business and Professional Ethics Journal 17 (3):79-108.
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  19. Wisdom, self-consciousness, and empire.Alexei Rutkevich - 2022 - In Luis J. Pedrazuela (ed.), Alexandre Kojève: a man of influence. Lanham, Maryland: Lexington Books.
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  20. Wisdom, self-consciousness, and empire.Alexei Rutkevich - 2022 - In Luis J. Pedrazuela (ed.), Alexandre Kojève: a man of influence. Lanham, Maryland: Lexington Books.
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  21.  5
    Russian Silver Age Philosophy of War: Main Features.Alexei A. Skvortsov - 2021 - Russian Journal of Philosophical Sciences 63 (11):91-103.
    The article discusses the main features of the Russian philosophy of war that developed in the first third of the 20th century. The author shows that in Russia, the philosophy of war did not develop as a separate broad line of research but limited itself to only a few meaningful, but rather brief, experiments. Nevertheless, many Russian philosophers left deep, well-founded reasoning about war, which can be reconstructed as a consistent system of views. One of its features is the shift (...)
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  22.  14
    Fast relaxation in disordered systems: from a double well to a cage.Alexei Sokolov & Vladimir Novikov - 2004 - Philosophical Magazine 84 (13-16):1355-1360.
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  23.  16
    $Y = 2x$ vs. $y = 3x$.Alexei Stolboushkin & Damian Niwinski - 1997 - Journal of Symbolic Logic 62 (2):661-672.
    We show that no formula of first order logic using linear ordering and the logical relation $y = 2x$ can define the property that the size of a finite model is divisible by 3. This answers a long-standing question which may be of relevance to certain open problems in circuit complexity.
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  24.  10
    Finite quasivarieties and self-referential conditions.Alexei Vernitski - 2004 - Studia Logica 78 (1-2):337-348.
    In this paper, we concentrate on finite quasivarieties (i.e. classes of finite algebras defined by quasi-identities). We present a motivation for studying finite quasivarieties. We introduce a new type of conditions that is well suited for defining finite quasivarieties and compare these new conditions with quasi-identities.
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  25.  28
    Evolution of Natural Agents: Preservation, Advance, and Emergence of Functional Information.Alexei A. Sharov - 2016 - Biosemiotics 9 (1):103-120.
    Biological evolution is often viewed narrowly as a change of morphology or allele frequency in a sequence of generations. Here I pursue an alternative informational concept of evolution, as preservation, advance, and emergence of functional information in natural agents. Functional information is a network of signs that are used by agents to preserve and regulate their functions. Functional information is preserved in evolution via complex interplay of copying and construction processes: the digital components are copied, whereas interpreting subagents together with (...)
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  26.  46
    The Conditions of Immanent Critique.Alexei Procyshyn - 2022 - Critical Horizons 23 (1):22-43.
    ABSTRACT This article contributes to methodological debates in contemporary critical theory regarding the scope and features of immanent critique. I spell out the philosophical commitments presupposed by this approach to criticism and identify its basic features by comparing it with more recognizable argumentative or interpretative strategies. This comparison yields three immanent-critical requirements – for inherence, contradiction, and access – which bring into relief the heuristic and ampliative character of immanent criticism. Yet, these requirements also imply that “immanent critique” is not (...)
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  27.  42
    Tetens und die Deduktion der Kategorien bei Kant.Alexei N. Krouglov - 2013 - Kant Studien 104 (4):466-489.
  28.  37
    Comprehending the Semiosis of Evolution.Alexei Sharov, Timo Maran & Morten Tønnessen - 2016 - Biosemiotics 9 (1):1-6.
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  29.  86
    Fundamental principles and mechanisms of the conscious self.Alexei V. Samsonovich & Lynn Nadel - 2005 - Cortex. Special Issue 41 (5):669-689.
  30.  25
    Evolutionary Biosemiotics and Multilevel Construction Networks.Alexei A. Sharov - 2016 - Biosemiotics 9 (3):399-416.
    In contrast to the traditional relational semiotics, biosemiotics decisively deviates towards dynamical aspects of signs at the evolutionary and developmental time scales. The analysis of sign dynamics requires constructivism to explain how new components such as subagents, sensors, effectors, and interpretation networks are produced by developing and evolving organisms. Semiotic networks that include signs, tools, and subagents are multilevel, and this feature supports the plasticity, robustness, and evolvability of organisms. The origin of life is described here as the emergence of (...)
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  31.  17
    An example of an automatic graph of intermediate growth.Alexei Miasnikov & Dmytro Savchuk - 2015 - Annals of Pure and Applied Logic 166 (10):1037-1048.
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  32.  8
    From Past to Future: The Soviet Union and the Russian Empire in Discourses of Rupture and Continuity.Alexei I. Miller & Natalia V. Trubnikova - 2022 - Russian Studies in Philosophy 60 (5):369-381.
    In the still highly politicized question of rupture or continuity between the Russian Empire and the Soviet Union, elements of continuity are not hard to find, nor should this be a surprise, since a new state arose in the same geographical space and made use of the economic, intellectual, and demographic resources inherited from the Russian Empire. At the same time, the Soviet Union could not have been more different than the Russian Empire. It rejected a number of key elements (...)
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  33.  29
    The Embedding Theorem: Its Further Developments and Consequences. Part 1.Alexei Y. Muravitsky - 2006 - Notre Dame Journal of Formal Logic 47 (4):525-540.
    We outline the Gödel-McKinsey-Tarski Theorem on embedding of Intuitionistic Propositional Logic Int into modal logic S4 and further developments which led to the Generalized Embedding Theorem. The latter in turn opened a full-scale comparative exploration of lattices of the (normal) extensions of modal propositional logic S4, provability logic GL, proof-intuitionistic logic KM, and others, including Int. The present paper is a contribution to this part of the research originated from the Gödel-McKinsey-Tarski Theorem. In particular, we show that the lattice ExtInt (...)
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  34.  48
    Recognition and Trust: Hegel and Confucius on the Normative Basis of Ethical Life.Alexei Procyshyn & Mario Wenning - 2019 - Dao: A Journal of Comparative Philosophy 18 (1):1-22.
    This essay offers a comparative analysis of the notion of trust in Hegel and Confucius. It shows that Hegel’s two senses of trust depend upon his theory of recognition and recognitive struggle. The competitive thrust of Hegel’s account of trust, it argues, introduces a series of problems that cannot be adequately resolved within his theory, since it presupposes the kinds of trusting relations—self-, intersubjective- and world-trust—that it purports to explain. This essay then turns to the Confucian notions of xin 心 (...)
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  35.  11
    Consciousness and Learning from the Biosemiotic Perspective.Alexei A. Sharov - 2022 - Biosemiotics 15 (3):483-490.
  36.  10
    Existence, Abstraction and Reference.Alexei Z. Chernyak - 2024 - Epistemology and Philosophy of Science 61 (1):106-121.
    The article is devoted to the well-known dispute between R. Carnap and W.V.O. Quine on the meaning of statements with names of abstractions, which also revealed their disagreements on the more general question of the nature of the dependence of ontology on the choice of language of knowledge. According to Quine, the choice of language carries with it certain ontological commitments – judgments of existence that must be true for anyone who appropriately uses the language in question. The language of (...)
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  37.  33
    Towards Synthesis of Biology and Semiotics.Alexei Sharov, Timo Maran & Morten Tønnessen - 2015 - Biosemiotics 8 (1):1-7.
    The journal Biosemiotics was envisioned by its founding editor, Marcello Barbieri, as a major periodical for interdisciplinary papers that integrate biology and semiotics. Since 2008 the journal has published 21 issues, including special issues on crucial problems such as the semiotics of perception, origins of mind, code biology, biohermeneutics, biosemiotic analysis of information and chance. The impact factor of the journal does not fully describe the significance of this journal, because the discipline of biosemiotics is young and remains in its (...)
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  38.  31
    Umwelt-theory and pragmatism.Alexei Sharov - 2001 - Semiotica 2001 (134).
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  39.  16
    Minimal mind.Alexei A. Sharov - 2013 - In Liz Swan (ed.), Origins of Mind. pp. 343--360.
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  40.  29
    Can social systems theory be used for immanent critique?Alexei Procyshyn - 2017 - Thesis Eleven 143 (1):97-114.
    Two trends have emerged in recent work from the Frankfurt School: the first involves a reconsideration of immanent critique’s basic commitments and viability for critical social theory, while the second involves an effort to introduce temporal considerations for social interaction into critical theorizing to help make sense of the phenomenon of social acceleration. This article contributes to these ongoing discussions by investigating whether social systems theory, in which temporal relations play a primary role, can be integrated with immanent critique. If (...)
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  41.  7
    Entombed Epigraphy and Commemorative Culture in Early Medieval China: A History of Early Muzhiming. By Timothy M. Davis.Alexei K. Ditter - 2021 - Journal of the American Oriental Society 139 (2).
    Entombed Epigraphy and Commemorative Culture in Early Medieval China: A History of Early Muzhiming. By Timothy M. Davis. Studies in the History of Chinese Texts, vol. 6. Leiden: Brill, 2015. Pp. xiv + 414. €125, $162.
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  42. Biosemiotics: A functional-evolutionary approach to the analysis of the sense of information.Alexei A. Sharov - forthcoming - Biosemiotics: The Semiotic Web.
     
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  43.  34
    Evolution of sex differences in lifespan and aging: Causes and constraints.Alexei A. Maklakov & Virpi Lummaa - 2013 - Bioessays 35 (8):717-724.
    Why do the two sexes have different lifespans and rates of aging? Two hypotheses based on asymmetric inheritance of sex chromosomes (“unguarded X”) or mitochondrial genomes (“mother's curse”) explain sex differences in lifespan as sex‐specific maladaptation leading to increased mortality in the shorter‐lived sex. While asymmetric inheritance hypotheses equate long life with high fitness, considerable empirical evidence suggests that sexes resolve the fundamental tradeoff between reproduction and survival differently resulting in sex‐specific optima for lifespan. However, selection for sex‐specific values in (...)
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  44.  25
    Beyond Rasiowan Systems: Unital Deductive Systems.Alexei Y. Muravitsky - 2014 - Logica Universalis 8 (1):83-102.
    We deal with monotone structural deductive systems in an unspecified propositional language \ . These systems fall into several overlapping classes, forming a hierarchy. Along with well-known classes of deductive systems such as those of implicative, Fregean and equivalential systems, we consider new classes of unital and weakly implicative systems. The latter class is auxiliary, while the former is central in our discussion. Our analysis of unital systems leads to the concept of Lindenbaum–Tarski algebra which, under some natural conditions, is (...)
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  45. Reconstruction of quantum theory.Alexei Grinbaum - 2007 - British Journal for the Philosophy of Science 58 (3):387 - 408.
    What belongs to quantum theory is no more than what is needed for its derivation. Keeping to this maxim, we record a paradigmatic shift in the foundations of quantum mechanics, where the focus has recently moved from interpreting to reconstructing quantum theory. Several historic and contemporary reconstructions are analyzed, including the work of Hardy, Rovelli, and Clifton, Bub and Halvorson. We conclude by discussing the importance of a novel concept of intentionally incomplete reconstruction.
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  46. Man and the universe : humanity in the centre of the faith and knowledge debate in Russian religious philosophy.Alexei V. Nesteruk - 2015 - In Teresa Obolevitch & Paweł Rojek (eds.), Faith and reason in Russian thought. Kraków: Copernicus Center Press.
     
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  47. Husserl's "Genealogy of Logic", Space-Constitution, and Noetic Geometry.Alexei Chernyakov - 1997 - Recherches Husserliennes 7:61-86.
  48. Ancient Greek Mathēmata from a Sociological Perspective: A Quantitative Analysis.Leonid Zhmud & Alexei Kouprianov - 2018 - Isis 109 (3):445-472.
    This essay examines the quantitative aspects of Greco-Roman science, represented by a group of established disci¬plines, which since the fourth century BC were called mathēmata or mathē¬ma¬tikai epistē¬mai. In the group of mathēmata that in Antiquity normally comprised mathematics, mathematical astronomy, harmonics, mechanics and optics, we have also included geography. Using a dataset based on The Encyclopaedia of Ancient Natural Scientists, our essay considers a community of mathēmatikoi (as they called themselves), or ancient scientists (as they are defined for the (...)
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  49. Philosophical foundations of effective field theories.Sébastien Rivat & Alexei Grinbaum - 2020 - European Physical Journal A 56 (3).
    This survey covers some of the main philosophical debates raised by the framework of effective field theories during the last decades. It is centered on three issues: whether effective field theories underpin a specific realist picture of the world, whether they support an anti-reductionist picture of physics, and whether they provide reasons to give up the ultimate aspiration of formulating a final and complete physical theory. Reviewing the past and current literature, we argue that effective field theories do not give (...)
     
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  50.  11
    Elementary equivalence of rings with finitely generated additive groups.Alexei G. Myasnikov, Francis Oger & Mahmood Sohrabi - 2018 - Annals of Pure and Applied Logic 169 (6):514-522.
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