Throughout the biological and biomedical sciences there is a growing need for, prescriptive ‘minimum information’ (MI) checklists specifying the key information to include when reporting experimental results are beginning to find favor with experimentalists, analysts, publishers and funders alike. Such checklists aim to ensure that methods, data, analyses and results are described to a level sufficient to support the unambiguous interpretation, sophisticated search, reanalysis and experimental corroboration and reuse of data sets, facilitating the extraction of maximum value from data sets (...) them. However, such ‘minimum information’ MI checklists are usually developed independently by groups working within representatives of particular biologically- or technologically-delineated domains. Consequently, an overview of the full range of checklists can be difficult to establish without intensive searching, and even tracking thetheir individual evolution of single checklists may be a non-trivial exercise. Checklists are also inevitably partially redundant when measured one against another, and where they overlap is far from straightforward. Furthermore, conflicts in scope and arbitrary decisions on wording and sub-structuring make integration difficult. This presents inhibit their use in combination. Overall, these issues present significant difficulties for the users of checklists, especially those in areas such as systems biology, who routinely combine information from multiple biological domains and technology platforms. To address all of the above, we present MIBBI (Minimum Information for Biological and Biomedical Investigations); a web-based communal resource for such checklists, designed to act as a ‘one-stop shop’ for those exploring the range of extant checklist projects, and to foster collaborative, integrative development and ultimately promote gradual integration of checklists. (shrink)

This book is available either individually, or as part of the specially-priced Arguments of the Philosphers Collection.

This study provides a comprehensive reinterpretation of the meaning of Locke's political thought. John Dunn restores Locke's ideas to their exact context, and so stresses the historical question of what Locke in the Two Treatises of Government was intending to claim. By adopting this approach, he reveals the predominantly theological character of all Locke's thinking about politics and provides a convincing analysis of the development of Locke's thought. In a polemical concluding section, John Dunn argues that liberal and (...) Marxist interpretations of Locke's politics have failed to grasp his meaning. Locke emerges as not merely a contributor to the development of English constitutional thought, or as a reflector of socio-economic change in seventeenth-century England, but as essentially a Calvinist natural theologian. (shrink)

A major account of the development of the political, religious, social and moral thought of John Locke.

Derek Parfit takes an externalist and cognitivist view about normative reasons. I shall explore this view and add some arguments that support it. But I shall also raise a doubt about it at the end.

This is a classic volume in the "library of Living Philosophers" and includes a collection of essays on Dewey's work by his contemporaries at the time of the volume's publication. It also includes a biographical essay on Dewey and his replies to the assembled essays.

This book shows that, far from repudiating Hegel, Dewey's entire pragmatic philosophy is premised on a "philosophy of spirit" inspired by Hegel's project.

This is an extensive anthology of the writings of John Dewey, edited by John J. McDermott.

(2006). John Gray and the Political Theory of Modus Vivendi. Critical Review of International Social and Political Philosophy: Vol. 9, The Political Theory of John Gray, pp. 155-169.

Practical reasoning is a process of reasoning that concludes in an intention. One example is reasoning from intending an end to intending what you believe is a necessary means: 'I will leave the next buoy to port; in order to do that I must tack; so I'll tack', where the first and third sentences express intentions and the second sentence a belief. This sort of practical reasoning is supported by a valid logical derivation, and therefore seems uncontrovertible. A more contentious (...) example is normative practical reasoning of the form 'I ought to φ, so I'll φ', where 'I ought to φ' expresses a normative belief and 'I'll φ' an intention. This has at least some characteristics of reasoning, but there are also grounds for doubting that it is genuine reasoning. One objection is that it seems inappropriate to derive an intention to φ from a belief that you ought to φ, rather than a belief that you ought to intend to φ. Another is that you may not be able to go through this putative process of reasoning, and this inability might disqualify it from being reasoning. A third objection is that it violates the Humean doctrine that reason alone cannot motivate any action of the will. This paper investigates these objections. (shrink)

An infinite lottery machine is used as a foil for testing the reach of inductive inference, since inferences concerning it require novel extensions of probability. Its use is defensible if there is some sense in which the lottery is physically possible, even if exotic physics is needed. I argue that exotic physics is needed and describe several proposals that fail and at least one that succeeds well enough.

A review of "Achieving Knowledge" by John Greco.

Though there are significant points of overlap between Michelle Kosch's reading of Fear and Trembling and my own, this paper focuses primarily on a significant difference: the legitimacy or otherwise of looking to paradigmatic exemplars of faith in order to understand faith. I argue that Kosch's reading threatens to underplay the importance of exemplarity in Kierkegaard's thought, and that there is good reason to resist her use of Philosophical Fragments as the key to interpreting the 'hidden message' of Fear and (...) Trembling. Key to both claims is the Concluding Unscientific Postscript. I also briefly sketch an alternative reading of the 'hidden message', one in which Kierkegaard's Christian commitments play a notably different role. (shrink)

This paperback edition reproduces the complete text of the Essay as prepared by professor Nidditch for The Clarendon Edition of the Works of John Locke. The Register of Formal Variants and the Glossary are omitted and Professor Nidditch has written a new foreword.

John Wilson's work as moral educator is summarized and evaluated. His rationalist humanistic approach is based on a componential characterization of the morally educated person. Such a person consistently manifests a unity of reflection, feeling, belief, and acting under the logically structured rubrics of PHIL, EMP, GIG and KRAT, and exemplifying the formal features of 'moral opinion'. The rationale and conceptual status of the components is discussed, as is the view that the concept of education entails that teachers be (...) moral educators. This involves cultivating autonomous rationality with respect to the unconscious, motivation, day-to-day moral decision-making, and the emotions; in the latter case there are extensive applications in religious education. Finally, certain weaknesses and pre-eminent strengths of Wilson's position are indicated, and comparisons briefly made with the views of McPhail, Peters, Frankena and Kohlberg. (shrink)

Alasdair MacIntyre asks, if all individuals are in fact potential authorities of natural law and agree on its fundamentals, how can we explain manifest moral disagreement? Contemporary Thomistic natural law theorists have not attempted to address this particular issue to a significant degree. MacIntyre, taking this large-scale rejection seriously, focuses on the communal factors that allow individuals to recognize their need for and commitment to Thomistic natural law. By doing so, he attempts to give reasons for why we should expect (...) natural law to be widely denied in contemporary society. In this paper, I argue that MacIntyre’s approach to natural law is capable of accounting for the seemingly paradoxical claim that these per se nota first principles of natural law might suffer apparent widespread rejection. Moreover, I will argue that MacIntyre’s account is also capable of explaining why we should actually expect such rejection to occur. (shrink)

John Searle begins his ``Consciousness, Explanatory Inversion and Cognitive Science'' with " ``Ten years ago in this journal I published an article criticising what I call Strong AI, the view that for a system to have mental states it is sufficient for the system to implement the right sort of program with right inputs and outputs. Strong AI is rather easy to refute and the basic argument can be summarized in one sentence: {it a system, me for example, could (...) implement a program for understanding Chinese, for example, without understanding any Chinese at all.} This idea, when developed, became known as the Chinese Room Argument.'' " The Chinese Room Argument can be refuted in one sentence. (shrink)

What is it reasonable to believe about our most successful scientific theories such as the general theory of relativity or quantum mechanics? That they are true, or at any rate approximately true? Or only that they successfully ‘save the phenomena’, by being ‘empirically adequate’? In earlier work I explored the attractions of a view called Structural Scientific Realism. This holds that it is reasonable to believe that our successful theories are structurally correct. In the first part of this paper I (...) shall explain in some detail what this thesis means and outline the reasons why it seems attractive. The second section outlines a number of criticisms that have none the less been brought against SSR in the recent literature; and the third and final section argues that, despite the fact that these criticisms might seem initially deeply troubling, the position remains viable. (shrink)

Bentham.--Coleridge.--M. de Tocqueville on democracy in America.--On liberty.--Utilitarianism.--From Considerations on representative government.--From An examination of Sir William Hamilton's philosophy, volume 1.--From Three essays on religion.--John Stuart Mill, a select bibliography (p. [525]-530).

While historians of scientific method have recently called attention to the views of many of John Stuart Mill's contemporaries on the relation between probability and inductive inference, little if any note has been taken of Mill's own vigorous attack on the received "Laplacean" interpretation of probability in the first edition of the System of Logic. This paper examines the place of Mill's critique, both in the overall framework of his philosophy, and in the tradition of assessing the so-called "probability (...) of causes". It also offers an account of why, in later editions of the work, Mill appears to adopt a much more sympathetic stance toward the received view. (shrink)