5 found
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  1. Flexibility and Utility of the Cell Cycle Ontology.Vladimir Mironov, Erick Antezana, Mikel Egaña, Ward Blondé, Bernard De Baets, Martin Kuiper & Robert Stevens - 2011 - Applied Ontology 6 (3):247-261.
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  2. Promoting Coherent Minimum Reporting Guidelines for Biological and Biomedical Investigations: The MIBBI Project.Chris F. Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A. Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R. Brinkman, Adam Michael Clark, Eric W. Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M. Hancock, Nigel W. Hardy, Henning Hermjakob, Randall K. Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas Le Novere, Jim Leebens-Mack, Suzanna E. Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth McNally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M. Reecy, Donald G. Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H. Scheuermann, Daniel Schober, Barry Smith & Jason Snape - 2008 - Nature Biotechnology 26 (8):889-896.
    Throughout the biological and biomedical sciences there is a growing need for, prescriptive ‘minimum information’ (MI) checklists specifying the key information to include when reporting experimental results are beginning to find favor with experimentalists, analysts, publishers and funders alike. Such checklists aim to ensure that methods, data, analyses and results are described to a level sufficient to support the unambiguous interpretation, sophisticated search, reanalysis and experimental corroboration and reuse of data sets, facilitating the extraction of maximum value from data sets (...)
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  3. Scientific Knowledge in the Age of Computation: Explicated, Computable and Manageable?Sophia Efstathiou, Rune Nydal, Astrid Lægreid & Martin Kuiper - forthcoming - Theoria: Revista de Teoría, Historia y Fundamentos de la Ciencia.
    Through an empirical account of Knowledge Management-enabled research in systems biology, we argue that computational KM helps produce new first-order biological knowledge, in new ways. KM is enabled by conceiving of ‘knowledge’ as an object for computational science: explicated in the text of biological articles and computable via appropriate data and metadata. These founded concepts risk underestimating practice-based knowing in ensuring the validity of ‘manageable’ knowledge as knowledge.
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    Flexibility and Utility of the Cell Cycle Ontology.Vladimir Mironov, Erick Zimar Antezana San Roman, Mikel Egaña, Ward Blondé, Bernard De Baets, Martin Kuiper & Robert Stevens - 2011 - Applied Ontology 6 (3):247-261.
    The Cell Cycle Ontology (CCO) has the aim to provide a 'one stop shop' for scientists interested in the biology of the cell cycle that would like to ask questions from a molecular and/or systems perspective: what are the genes, proteins, and so on involved in the regulation of cell division? How do they interact to produce the effects observed in the regulation of the cell cycle? To answer these questions, the CCO must integrate a large amount of knowledge from (...)
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    Scientific Knowledge in the Age of Computation: Explicated, Computable and Manageable?Sophia Efstathiou, Rune Nydal, Astrid Laegreid & Martin Kuiper - 2019 - Theoria. An International Journal for Theory, History and Foundations of Science 34 (2):213.
    We have two theses about scientific knowledge in the age of computation. Our general claim is that scientific Knowledge Management practices emerge as second-order practices whose aim is to systematically collect, take care of and mobilise first-hand disciplinary knowledge and data. Our specific thesis is that knowledge management practices are transforming biological research in at least three ways. We argue that scientific Knowledge Management a. operates with founded concepts of biological knowledge as explicated and computable, b. enables new outputs and (...)
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