The value of any kind of data is greatly enhanced when it exists in a form that allows it to be integrated with other data. One approach to integration is through the annotation of multiple bodies of data using common controlled vocabularies or ‘ontologies’. Unfortunately, the very success of this approach has led to a proliferation of ontologies which itself creates obstacles to integration. The Open Biomedical Ontologies (OBO) consortium has set in train a strategy to overcome this problem. Existing (...) OBO ontologies, including the Gene Ontology, are undergoing a process of coordinated reform and new ontologies being created on the basis of an evolving set of shared principles governing ontology development. The result is an expanding family of ontologies designed to be interoperable, logically well-formed, and to incorporate accurate representations of biological reality. We describe the OBO Foundry initiative, and provide guidelines for those who might wish to become involved. (shrink)

Humean supervenience is the doctrine that there are no necessary connections in the world. David Lewis identifies one big bad bug to the programme of providing Humean analyses for apparently non-Humean features of the world. The bug is chance. We put the bug under the microscope, and conclude that chance is no special problem for the Humean.

David Lewis’s ‘Humean Supervenience’ (henceforth ‘HS’) combines realism about laws, chances, and dispositions with a sparse ontology according to which everything supervenes on the overall spatiotemporal distribution of non-dispositional properties (Lewis 1986a, Philosophical papers: Volume II, pp. ix–xvii, New York: Oxford Univesity Press, 1994, Mind 103:473–490). HS faces a serious problem—a “big bad bug” (Lewis 1986a, p. xiv): it contradicts the Principal Principle, a seemingly obvious norm of rational credence. Two authors have tried to rescue Lewis’s ontology from the ‘big (...) bad bug’ (henceforth ‘the Bug’) by rejecting realism about laws, chances, and dispositions (Halpin 1994, Aust J Phil 72:317–338, 1998, Phil Sci 65:349–360; Ward 2005, Phil Sci 71:241–261). I will argue that this strategy cannot possibly work: it is the ontology, not the realist thesis, that lies at the root of the problem. (shrink)

There’s a long history of discussion of probability in philosophy, but objective chance separated itself off and came into its own as a topic with the advent of a physical theory - quantum mechanics - in which chances play a central, and apparently ineliminable, role. In 1980 David Lewis wrote a paper pointing out that a very broad class of accounts of the nature of chance apparently lead to a contradiction when combined with a principle that expresses the role of (...) chance in guiding belief. There is still no settled agreement on the proper response to the Lewis problem. At the time he wrote the article, Lewis despaired of a solution, but, although he never achieved one that satisfied him completely, by 1994, due to work primarily by Thau and Hall, he had come to think the problem could be disarmed if we fudged a little on the meaning of ‘chance’. I’ll say more about this below. What I’m going to suggest, however, is that the qualification is unnecessary. The problem depends on an assumption that should be rejected, viz., that using information about chance to guide credence requires one to conditionalize on the theory of chance that one is using. I’m going to propose a general recipe for using information about chance to guide belief that does not require conditionalization on a theory of chance at any stage. Lewis’ problem doesn’t arise in this setting. (shrink)

Distilling the main currents of James's thought, William J. Gavin focuses on "latent" and "manifest" ideas in James to disclose the notion of "will to believe," which courses through his work.

v. 1. William and Henry, 1861-1884 -- v. 2. William and Henry, 1885-1896 -- v. 3. William and Henry, 1897-1910 -- v. 4. 1856-1877 -- v. 5. 1878-1884 -- v. 6. 1885-1889 -- v. 7. 1890-1894 -- v. 8. 1895-June 1899 -- v. 9. July 1899-1901 -- v. 10. 1902-March 1905 -- v. 11. April 1905-March 1908 -- v. 12. April 1908-August 1910.

In The City of God , XI, 10, St Augustine claims that the divine nature is simple because ‘it is what it has’ . We may take this as a slogan for the Doctrine of Divine Simplicity , a doctrine which finds its way into orthodox medieval Christian theological speculation. Like the doctrine of God's timeless eternality, the DDS has seemed obvious and pious to many, and incoherent, misguided, and repugnant to others. Unlike the doctrine of God's timeless eternality, the (...) DDS has received very little critical attention. The DDS did not originate with Augustine, but I am not primarily concerned with its pedigree. Nor am I concerned to ask how the doctrine interacts with trinitarian speculation. I will have my hands full as it is. In Section I of this paper I shall provide a rough characterization of the DDS, indicate its complexity, and focus on a particular aspect of the doctrine which will exercise us in the remainder of the paper, namely, the thesis that the divine attributes are all identical with each other and with God. In section n I shall discuss Alvin Plantinga's recent objections to Aquinas' version of the DDS. I shall then offer a more detailed presentation of what I take to be Aquinas' version , and recast it in terms of a theory of attributes which is significantly different from Plantinga's . Although the recasting of the doctrine will enable me to rebut Plantinga's objections , it by no means solves all the problems of the DDS. In section vi I shall discuss the chief lingering problem facing a defender of the DDS. (shrink)

The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are conducted. OBI re-uses ontologies that provide a representation of biomedical knowledge from the Open Biological and Biomedical Ontologies (OBO) project and adds the ability to describe how this knowledge was derived. We here describe the state of OBI and several applications that are using it, such as adding semantic expressivity to (...) existing databases, building data entry forms, and enabling interoperability between knowledge resources. OBI covers all phases of the investigation process, such as planning, execution and reporting. It represents information and material entities that participate in these processes, as well as roles and functions. Prior to OBI, it was not possible to use a single internally consistent resource that could be applied to multiple types of experiments for these applications. OBI has made this possible by creating terms for entities involved in biological and medical investigations and by importing parts of other biomedical ontologies such as GO, Chemical Entities of Biological Interest (ChEBI) and Phenotype Attribute and Trait Ontology (PATO) without altering their meaning. OBI is being used in a wide range of projects covering genomics, multi-omics, immunology, and catalogs of services. OBI has also spawned other ontologies (Information Artifact Ontology) and methods for importing parts of ontologies (Minimum information to reference an external ontology term (MIREOT)). The OBI project is an open cross-disciplinary collaborative effort, encompassing multiple research communities from around the globe. To date, OBI has created 2366 classes and 40 relations along with textual and formal definitions. The OBI Consortium maintains a web resource providing details on the people, policies, and issues being addressed in association with OBI. (shrink)

To date, there have been only two scholarly papers devoted to a comparison of Gestalt psychology with the psychology of William James. An early paper by Mary Whiton Calkins called attention to numerous similarities between these two schools of thought. However, a more recent paper by Mary Henle argues that the ideas of William James, as presented in The Principles of Psychology, are irrelevant to Gestalt psychology. In what follows, this claim is evaluated both in terms of The (...) Principles and Jamesís larger vision as set forth in his mature philosophical works. Although there are important differences between James and the Gestalt psychologists, there are also striking similarities particularly when the two schools are examined in the light of Jamesís mature philosophical perspectives. (shrink)

I will talk here about three problems that have bothered me for a number of years, during which time I have experimented with a variety of solutions and encouraged others to work on them. I have raised each of them separately both in full and in passing in various contexts, but thought it would be worthwhile on this occasion to bring them to your attention side by side. In this talk I will explain the problems, together with some things that (...) have been tried in the past and some new ideas for their solution. (shrink)

In his introduction to this collection, John representative. McDermott presents James's thinking in all its manifestations, stressing the importance of radical empiricism and placing into perspective the doctrines of pragmatism and the will to believe. The critical periods of James's life are highlighted to illuminate the development of his philosophical and psychological thought. The anthology features representive selections from The Principles of Psychology, The Will to Believe , and The Variety of Religious Experience in addition to the complete Essays in (...) Radical Empiricism and A Pluralistic Universe . The original 1907 edition of Pragmatism is included, as well as classic selections from all of James's other major works. Of particular significance for James scholarship is the supplemented version of Ralph Barton Perry's Annotated Bibliography of the Writings of William James , with additions bringing it up to 1976. (shrink)

With increasing appreciation that the Y2K problem may turn out to have unpredictable and potentially far-reaching effects, we are faced with what in some ways resembles the looming global ecological crisis, only this time what is at stake are not vital ecosystem services but rather the vital structures of our highly complex socially constructed reality—and this time we have a date-certain deadline for the onset of the crisis. Regardless of what actually happens when the calendar turns from 1999 to 2000, (...) this period of waiting for the millennium bug can be a productive one if it induces some of us to contemplate what things we actually depend upon to sustain our lives and, utilizing John Searle's analysis, in what ways we might reconstruct our social reality if faced with the opportunity—and why we haven't begun to do so sooner. (shrink)

With increasing appreciation that the Y2K problem may turn out to have unpredictable and potentially far-reaching effects, we are faced with what in some ways resembles the looming global ecological crisis, only this time what is at stake are not vital ecosystem services but rather the vital structures of our highly complex socially constructed reality—and this time we have a date-certain deadline for the onset of the crisis. Regardless of what actually happens when the calendar turns from 1999 to 2000, (...) this period of waiting for the millennium bug can be a productive one if it induces some of us to contemplate what things we actually depend upon to sustain our lives and, utilizing John Searle's analysis, in what ways we might reconstruct our social reality if faced with the opportunity—and why we haven't begun to do so sooner. (shrink)

Beliefs are freely attributed to God nowadays in Anglo–American philosophical theology. This practice undoubtedly reflects the twentieth–century popularity of the view that knowledge consists of true justified belief . The connection is frequently made explicit. If knowledge is true justified belief then whatever God knows He believes. It would seem that much recent talk of divine beliefs stems from Nelson Pike's widely discussed article, ‘Divine Omniscience and Voluntary Action’. In this essay Pike develops a version of the classic argument for (...) the incompatibility of divine foreknowledge and free will in terms of divine forebelief. He introduces this shift by premising that ‘ A knows X ’ entails ‘A believes X ’. As a result of all this, philosophers have increasingly been using the concept of belief in defining ‘omniscience’. (shrink)

In this paper I propose to examine the cognitive status of mystical experience. There are, I think, three distinct but overlapping sorts of religious experience. In the first place, there are two kinds of mystical experience. The extrovertive or nature mystic identifies himself with a world which is both transfigured and one. The introvertive mystic withdraws from the world and, after stripping the mind of concepts and images, experiences union with something which can be described as an undifferentiated unity. Introvertive (...) mysticism is a more important phenomenon than extrovertive mysticism. Numinous experiences are complex experiences involving dread, awe, wonder, and fascination. One finds oneself confronted with something which is radically unlike ordinary objects. Before its overwhelming majesty and power, one is nothing but dust and ashes. In contrasting oneself with its uncanny beauty and goodness, one experiences one's own uncleanness and ugliness. The experiences bound up with the devotional life of the ordinary believer are also religious in character. Nevertheless these more ordinary experiences should, I think, be distinguished both from numinous experiences and from mystical experiences, for they do not appear to involve the sense of immediate presence which characterises the latter. (shrink)

Donald Davidson notoriously rejected ‘metaphorical meaning’ and denied the existence of linguistic mechanisms by which metaphorical significance is conveyed. He contended that the meanings metaphorical sentences have are just their literal meanings, though metaphorical utterances may brute-causally have important cognitive effects. Contrastingly, John Searle offers a Gricean account of metaphor as an elaborated kind of implicature, and defends metaphorical meaning as speaker-meaning. Each of those positions is subject to very telling objections from the other's point of view. This paper proposes (...) a synthesis that combines the respective virtues of Davidson's and Searle's accounts and avoids all the objections to each. (shrink)

Here are some things that are widely believed about free will and determinism. Free will is prima facie incompatible with determinism. The incompatibility is logical or at least conceptual or a priori. A compatibilist needs to explain how free will can co-exist with determinism, paradigmatically by offering an analysis of ‘free’ action that is demonstrably compatible with determinism. Free will is not impugned by quantum in determinism, at least not in the same decisive way that it is impugned by determinism. (...) To reconcile free will with quantum indeterminism takes work, but the work comes under the heading of metaphysical business-as-usual; to reconcile free will with determinism requires a conceptual breakthrough. And listen to Laura Waddell Ekstrom on the burden of proof. (shrink)

During the past few decades a growing interest in what is often called the ‘Kyoto School’ of philosophy has evidenced itself here and there in the West, especially in discussions of comparative religious thought and in the pages of journals which are sensitive, in the post-colonial world, to the value of giving attention to contemporary thought that originates outside the Anglo-American and continental contexts. What has made the so-called Kyoto School especially interesting is the fact that those thinkers identified with (...) it obviously possess a wide acquaintance with Western thought but also have a programme of clarifying points at which they, as Japanese philosophers, find Western philosophy either in sum or in its parts inadequate or objectionable. Moreover, inasmuch as the philosophers of the Kyoto School have deliberately reached back into the Mahayana Buddhist component in Japanese civilization in order to find terms, perspectives, and even foundations for their own analyses and constructions, Western students of comparative religion and comparative thought have in the study of this school a unique aperture for observing how a group of thinkers, while sharing modernity and its problems with us, reates both of these to a religious tradition which is in many ways strikingly different from that of the West. (shrink)

That law is coercive is something we all more or less take for granted. It is an assumption so rooted in our ways of thinking that it is taken as a given of social reality, an uncontroversial datum. Because it is so regarded, it is infrequently stated, and when it is, it is stated without any hint of possible complications or qualifications. I will call this the “prereflective view,” and I want to examine it with the care it deserves.

The conceptual framework of religion is more like the frame of a picture than the frame of a house; and what goes on within the frame is other than conceptual. This is the hypothesis motivating the analysis which follows. Given the hypothesis, the problem is to conceive what religion is - this other-than-conceptual enterprise which tends to attract conceptual frames. A possible answer is available in Wittgensteinian ‘seeing-as’. A number of philosophers of religion have recently exercised this option. The present (...) paper adds to their work by comparing a number of types of religious seeing-as with the instances of visual ambiguity drawn on by Wittgenstein. (shrink)

In his article, ‘Gratuitous evil and divine providence’, Alan Rhoda claims to have produced an uncontroversial theological premise for the evidential argument from evil. I argue that his premise is by no means uncontroversial among theists, and I doubt that any premise can be found that is both uncontroversial and useful for the argument from evil.

The original 1907 text is accompanied with a series of critical essays from scholars including Moore and Russell. In the introduction Olin evaluates the strength of the criticisms made against James.

This essay focuses on what I shall call “cosmopolitan altruism”—the motivationally effective desire to assist needy or endangered strangers. Section I describes recent research that confirms the existence of this phenomenon. Section II places it within interlocking sets of moral typologies that distinguish among forms of altruism along dimensions of scope, interests risked, motivational source, and baseline of moral judgment. Section III explores some of the relationships between altruism—a concept rooted in modern moral philosophy and Christianity—and the understanding of virtue (...) and friendship characteristic of Aristotelian ethical analysis. Finally, Section IV argues that cosmopolitan altruism does not represent moral progress simpliciter over other, less inclusive views, and that the widening of moral sympathy to encompass endangered strangers entails significant moral costs. (shrink)

In the movie Regarding Henry, the main character, Henry Turner, is a lawyer who suffers brain damage as a result of being shot during a robbery. Before being wounded, the Old Henry Turner had been a successful lawyer, admired as a fierce competitor and well-known for his killer instinct. As a result of the injury to his brain, the New Henry Turner loses the personality traits that had made the Old Henry such a formidable adversary.

The doctrine of divine simplicity, the doctrine that God has no physical or metaphysical complexity whatsoever, is not a doctrine designed to induce immediate philosophical acquiescence. There are severe questions about its coherence. And even if those questions can be answered satisfactorily in favour of the doctrine, there remains the question why anyone should accept it. Thomas V. Morris raises both sorts of questions about a version of the doctrine which I have put forward. In the following pages I shall (...) respond to what I take to be the most serious of Morris's objections. I shall argue that the doctrine survives Morris's onslaught, but that one observation of his points it in a direction I had hitherto not taken seriously. The bulk of Morris's paper raises questions of the first sort; perforce the bulk of my paper will also. I shall offer, at the end, a reason for thinking that neither of us is yet in a position to pronounce categorically on the second question. My remarks in this paper constitute an interim report on how I think things presently stand with divine simplicity. (shrink)

One of the most influential analytic philosophers of the late twentieth century, William P. Alston is a leading light in epistemology, philosophy of religion, and the philosophy of language. In this volume, twelve leading philosophers critically discuss the central topics of his work in these areas, including perception, epistemic circularity, justification, the problem of religious diversity, and truth.

William P. Alston's book, Perceiving God: The Epistemology of Religious Experience , challenges the contemporary view that religious experience is purely subjective. He theorizes that a direct experiential awareness of God can produce immediately justified beliefs about God. Accordingly, this dissertation critically assesses the problem of subjectivism thought to taint Alston's epistemology of religious experience. ;Upon disclosing the prevalence of subjectivity, and identifying the potential for objectivity in religious experience, this treatise produces a viable resolve for objectivity in mystical (...) perception. It accomplishes this task through several considerations. ;Through an historical analysis of evidentialism's influence in empiricism and analytic philosophy of religion, we can determine the extent to which Alston's epistemology succumbs to this influence. Although finding evidentialism to be prevalent, Alston's theory of "reliabilism," namely the reliability of sensory perception, attempts to overcome evidentialism's predilection toward subjectivism. Nevertheless, it will be demonstrated that the object of consciousness in the perceptual act is still a mental entity. Thus subjectivism persists. Having identified that Alston's phenomenology of perception in particular, does very little to overturn the verdict of subjectivism, this study proceeds to identify an alternative phenomenology. ;Merleau-Ponty's "primacy of perception" seems a likely candidate for providing a richer phenomenological description of perception than Alston's. Once issues of relevancy have been satisfactorily addressed, it will be proposed that Merleau-Ponty's phenomenology, i.e. "reversibility thesis," accentuates a "genuine" objective moment in perception. One in which we are able to appropriate to Alston's concept of mystical perception. This phenomenological revision to Alston's epistemology of religious experience does much to counter the charge of subjectivism. ;The above proffering is rendered in six chapters. Chapter I provides a close reading of Perceiving God. Chapter II succinctly puts forth what exactly Alston's epistemology responds to in classical British empiricism and analytic philosophy of religion. Chapter III places Alston in the contemporary discussion in analytic epistemology. Chapter IV points to where Alston's epistemology of religious experience is vulnerable to the charge of subjectivism. Chapters V and VI provide an alternative phenomenology based on Merleau-Pontian insights, which are applied to Alston's epistemology of religious experience. (shrink)

William James's essay, "The Will to Believe," is interpreted as a philosophical argument for two conclusions: Some over-beliefs—i.e., beliefs going beyond the available evidence—are rationally justified under certain conditions; and "The Religious Hypothesis" is justified for some people under these conditions. Section I defends viewing James as presenting arguments, Sections II-III try to formulate the dual conclusions more precisely, and Section IT defends this reading against alternative interpretations. Section 7, the heart of the paper, elaborates five logically distinct arguments (...) implicit in "The Will to Believe" with regard to non-evidential justification. Section VI examines "The Religious Hypothesis," and Section VII concludes by noting that while James's particular arguments are largely unsuccessful nevertheless the project of finding non- evidential or "practical" rational warrants for religious over-beliefs seems promising. Two appendices supplement the body of the text. The first considers some formal aspects of the so-called "ethics of belief" in order to clarify James's desired conclusions) in "The Will to Believe," and the second shows that and how James's own "technical distinctions" are both obscure and largely irrelevant to his central task. (shrink)

This essay explores the ways in which a broadly pluralist outlook can help illuminate longstanding issues of constitutional theory and practice. It begins with a common-sense understanding of pluralism as the diversity of observed practices within a general category. It turns out that many assumptions Americans and others often make about constitutional essentials are valid only locally but not generically. The essay then turns to pluralism in a more technical and philosophical sense—specifically, the account of value pluralism adumbrated by Isaiah (...) Berlin and developed by his followers. Section 3 sketches this version of pluralism, and section 4 brings it to bear on a range of familiar constitutional issues. In the process, a distinction emerges between, on the one hand, areas of variation among constitutions and, on the other, some general truths about political life that define core constitutional functions. The essay concludes with some brief reflections on the normative thrust of pluralist constitutional theory—in particular, a presumption in favor of the maximum accommodation of individual and group differences consistent with the maintenance of constitutional unity and civic order. (shrink)

The nineteenth-century British philosopher William Hamilton defended his law of the conditioned in part on the strength of its ability to offer a satisfactory theory of causation. He maintained that our belief that every event is the outcome of some cause and the source of some further effect finds its ground, not in the world, but rather in the limitations of our own minds; specifically in our inability to conceive of either absolute commencement of being or its absolute annihilation. (...) While radically unlike modern conceptions of causality, Hamilton's account is better able to defend itself than either its critics or its neglect might suggest, while its modest and negative formulation recommends it to those of a sceptical tendency. (shrink)

Translator's Introduction This book may be studied independently, but in several respects it is a companion volume to my William of Sherwood's Introduction ...

Eldon Soifer and Béla Szabados argue that hypocrisy poses a problem for consequentialism because the hypocrite, in pretending to live up to a norm he or she does not really accept, acts in ways that have good results. They argue, however, that consequentialists can meet this challenge and show the wrongness of hypocrisy by adopting a desirefulfilment version of their theory. This essay raises some doubts about Soifer and Szabados's proposal and argues that consequentialism has no difficulty coming to grips (...) with hypocrisy, whether or not one favours a desire-fulfilment account of the good. (shrink)

Dale Tuggy argues that his divine-deception argument against Social Trinitarianism remains unscathed, in spite of my recent objections. I maintain that his argument is question-begging and exegetically weak, and does not succeed in refuting Social Trinitarianism.

According to William Craig, the notion of explanatory priority is the Achilles' heel of Robert Adams' argument against Molinism. Specifically, Craig contends that (1) the notion of explanatory priority is employed equivocally in the argument; (2) Adams is guilty of conflating reasons and causes; and (3) one of the intermediate conclusions of the argument is invalidly inferred, as can be seen by a counterexample. I argue that Craig is mistaken on all counts, and that Adams' argument emerges unscathed.

William Lyons presents an original thesis on introspection as self-interpretation in terms of a culturally influenced model. His work rests on a lucid, careful, and critical examination of the transformations that have occurred over the past century in the concepts and models of introspection in philosophy and psychology. He reviews the history of introspection in the work of Wundt, Boring, and William James, and reactions to it by behaviorists Watson, Lashley, Ryle, and Skinner.

I begin with a note about moral goodness as a quality, disposition, or trait of a person or human being. This has at least two different senses, one wider and one narrower. Aristotle remarked that the Greek term we translate as justice sometimes meant simply virtue or goodness as applied to a person and sometimes meant only a certain virtue or kind of goodness. The same thing is true of our word “goodness.” Sometimes being a good person means having all (...) the virtues, or at least all the moral ones; then goodness equals the whole of virtue. But sometimes, being a good person has a narrower meaning, namely, being kind, generous, and so forth. Thus, my OED sometimes equates goodness with moral excellence as a whole and sometimes with a particular moral excellence, viz., kindness, beneficence, or benevolence; and the Bible, when it speaks of God as being good sometimes means that God has all the virtues and sometimes only that he is kind, mereiful, or benevolent. When Jesus says, “Why callest thou me good: None is good, save one, that is God,” he seems to be speaking of goodness in the inclusive sense, but when the writer of Exodus has God himself say that he is “merciful and gracious, long-suffering, and abundant in goodness and truth,” God is using “goodness” in the narrower sense in which it means benevolence, for he goes on to make it clear that he is also just and severe. Similarly, “good will” may mean either “morally good will” in general, as it does in Kant, or it may mean only “benevolent will,” as it usually does; in “men of good will” it is perhaps ambiguous. (shrink)