Linked bibliography for the SEP article "Evolution and Development" by Jan Baedke and Scott F. Gilbert

This is an automatically generated and experimental page

If everything goes well, this page should display the bibliography of the aforementioned article as it appears in the Stanford Encyclopedia of Philosophy, but with links added to PhilPapers records and Google Scholar for your convenience. Some bibliographies are not going to be represented correctly or fully up to date. In general, bibliographies of recent works are going to be much better linked than bibliographies of primary literature and older works. Entries with PhilPapers records have links on their titles. A green link indicates that the item is available online at least partially.

This experiment has been authorized by the editors of the Stanford Encyclopedia of Philosophy. The original article and bibliography can be found here.

Aaby, Bendik Hellem, and Grant Ramsey, forthcoming, “Three Kinds of Niche Construction”, The British Journal for the Philosophy of Science, first online 05 December 2019. doi:10.1093/bjps/axz054 (Scholar)
Abouheif, Ehab, Marie-Julie Favé, Ana Sofia Ibarrarán-Viniegra, Maryna P. Lesoway, Ab Matteen Rafiqi, and Rajendhran Rajakumar, 2014, “Eco-Evo-Devo: The Time Has Come”, in Ecological Genomics, Christian R. Landry and Nadia Aubin-Horth (eds.), (Advances in Experimental Medicine and Biology 781), Dordrecht: Springer Netherlands, 107–125. doi:10.1007/978-94-007-7347-9_6 (Scholar)
Abzhanov, Arhat, Meredith Protas, B. Rosemary Grant, Peter R. Grant, and Clifford J. Tabin, 2004, “Bmp4 and Morphological Variation of Beaks in Darwin’s Finches”, Science, 305(5689): 1462–1465. doi:10.1126/science.1098095 (Scholar)
Alberch, P., 1982, “The Generative and Regulatory Roles of Development in Evolution”, in D. Mossakowski and G. Roth (eds.), Environmental Adaptation and Evolution, Stuttgart: Gustav Fischer, pp. 19–35. (Scholar)
Amundson, Ron, 2005, The Changing Role of the Embryo in Evolutionary Thought: Roots of Evo-Devo, Cambridge: Cambridge University Press. doi:10.1017/cbo9781139164856 (Scholar)
Ariew, André, 2003, “Ernst Mayr’s ‘ultimate/Proximate’ Distinction Reconsidered and Reconstructed”, Biology & Philosophy, 18(4): 553–565. doi:10.1023/a:1025565119032 (Scholar)
Arthur, Wallace, 2004, Biased Embryos and Evolution, Cambridge: Cambridge University Press. doi:10.1017/cbo9780511606830 (Scholar)
Baedke, Jan, 2013, “The Epigenetic Landscape in the Course of Time: Conrad Hal Waddington’s Methodological Impact on the Life Sciences”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 44(4): 756–773. doi:10.1016/j.shpsc.2013.06.001 (Scholar)
–––, 2017, “The New Biology of the Social: Shaping Humans’ Future, Science, and Public Health”, in Imagined Futures in Science, Technology and Society, Gert Verschraegen, Frédéric Vandermoere, Luc Brackmans, and Barbara Segaert (eds.), London: Routledge, 45–64. (Scholar)
–––, 2018, Above the Gene, Beyond Biology: Towards a Philosophy of Epigenetics, Pittsburgh, PA: University of Pittsburgh Press. (Scholar)
–––, 2019a, “O Organism, Where Art Thou? Old and New Challenges for Organism-Centered Biology”, Journal of the History of Biology, 52(2): 293–324. doi:10.1007/s10739-018-9549-4 (Scholar)
–––, 2019b, “What Is a Biological Individual?”, in Old Questions and Young Approaches to Animal Evolution, José M. Martín-Durán and Bruno C. Vellutini (eds.), (Fascinating Life Sciences), Cham: Springer International Publishing, 269–284. doi:10.1007/978-3-030-18202-1_13 (Scholar)
–––, 2020, “Mechanisms in Evo-Devo”, in Evolutionary Developmental Biology, Laura Nuño de la Rosa and Gerd Müller (eds.), Cham: Springer International Publishing, 1–14. doi:10.1007/978-3-319-33038-9_94-1 (Scholar)
Baedke, Jan and Siobhan F. Mc Manus, 2018, “From Seconds to Eons: Time Scales, Hierarchies, and Processes in Evo-Devo”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 72: 38–48. doi:10.1016/j.shpsc.2018.10.006 (Scholar)
Baedke, Jan, Alejandro Fábregas‐Tejeda, and Abigail Nieves Delgado, 2020a, “The Holobiont Concept before Margulis”, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 334(3): 149–155. doi:10.1002/jez.b.22931 (Scholar)
Baedke, Jan, Alejandro Fábregas-Tejeda, and Francisco Vergara-Silva, 2020b, “Does the Extended Evolutionary Synthesis Entail Extended Explanatory Power?”, Biology & Philosophy, 35(1): 20. doi:10.1007/s10539-020-9736-5 (Scholar)
Baedke, Jan and Tobias Schöttler, 2017, “Visual Metaphors in the Sciences: The Case of Epigenetic Landscape Images”, Journal for General Philosophy of Science, 48(2): 173–194. doi:10.1007/s10838-016-9353-9 (Scholar)
Baer, Karl Ernst von, 1827, De Ovi Mammalium et Hominis Genesi. Epistolam Ad Academiam Imperialem Scientiarum Petropolitanam Dedit Carolus Ernestus a Baer. Cum Tabula Aenea., Lipsiae: Sumptibus L. Vossii. doi:10.5962/bhl.title.68345 (Scholar)
Baker, Brennan H., Sonia E. Sultan, Maya Lopez-Ichikawa, and Robin Waterman, 2019, “Transgenerational Effects of Parental Light Environment on Progeny Competitive Performance and Lifetime Fitness”, Philosophical Transactions of the Royal Society B: Biological Sciences, 374(1768): 20180182. doi:10.1098/rstb.2018.0182 (Scholar)
Baker, John R., 1938, “The Evolution of Breeding Seasons”, in Evolution: Essays on Aspects of Evolutionary Biology, G. R. De Beer (eds.), Oxford: Clarendon Press. 161–77. (Scholar)
Baldwin, James Mark, 1896, “A New Factor in Evolution”, The American Naturalist, 30 (354): 441–451, 536–553. [Baldwin 1896 available online] (Scholar)
Bateson, Patrick and Peter Gluckman, 2011, Plasticity, Robustness, Development and Evolution, Cambridge: Cambridge University Press. doi:10.1017/cbo9780511842382 (Scholar)
Beatty, John, 1994, “The Proximate/Ultimate Distinction in the Multiple Careers of Ernst Mayr”, Biology & Philosophy, 9(3): 333–356. doi:10.1007/bf00857940 (Scholar)
Bechtel, William and Adele Abrahamsen, 2010, “Dynamic Mechanistic Explanation: Computational Modeling of Circadian Rhythms as an Exemplar for Cognitive Science”, Studies in History and Philosophy of Science Part A, 41(3): 321–333. doi:10.1016/j.shpsa.2010.07.003 (Scholar)
Bechtel, William and Robert C. Richardson, 1993, Discovering Complexity: Decomposition and Localization as Strategies in Scientific Research, Princeton, NJ: Princeton University Press. (Scholar)
Bello, Maria G. Dominguez, Rob Knight, Jack A. Gilbert, and Martin J. Blaser, 2018, “Preserving Microbial Diversity”, Science, 362(6410): 33–34. doi:10.1126/science.aau8816 (Scholar)
Bonner, John Tyler, 1958, The Evolution of Development, London: Cambridge University Press. (Scholar)
–––, 1965, Size and Cycle: An Essay on the Structure of Biology, Princeton, NJ: Princeton University Press. (Scholar)
––– (ed.), 1982, Evolution and Development: Report of the Dahlem Workshop on Evolution and Development, Berlin: Springer. doi:10.1007/978-3-642-45532-2 (Scholar)
Bosch, Thomas C.G. and Margaret J. McFall-Ngai, 2011, “Metaorganisms as the New Frontier”, Zoology, 114(4): 185–190. doi:10.1016/j.zool.2011.04.001 (Scholar)
Bowler, Peter J., 1983, Eclipse of Darwinism: Anti-Darwinian Evolution Theories in the Decades Around 1900, Baltimore, MD: Johns Hopkins University Press. (Scholar)
–––, 2017, “Alternatives to Darwinism in the Early Twentieth Century”, in The Darwinian Tradition in Context, Richard G. Delisle (ed.), Cham: Springer International Publishing, 195–217. doi:10.1007/978-3-319-69123-7_9 (Scholar)
Brigandt, Ingo, 2013, “Systems Biology and the Integration of Mechanistic Explanation and Mathematical Explanation”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 44(4, Part A): 477–492. doi:10.1016/j.shpsc.2013.06.002 (Scholar)
–––, 2015, “Evolutionary Developmental Biology and the Limits of Philosophical Accounts of Mechanistic Explanation”, in Explanation in Biology: An Enquiry into the Diversity of Explanatory Patterns in the Life Sciences, Pierre-Alain Braillard and Christophe Malaterre (eds.), (History, Philosophy and Theory of the Life Sciences 11), Dordrecht: Springer Netherlands, 135–173. doi:10.1007/978-94-017-9822-8_7 (Scholar)
Brown, Rachael L., 2014, “What Evolvability Really Is”, The British Journal for the Philosophy of Science, 65(3): 549–572. doi:10.1093/bjps/axt014 (Scholar)
Browne, Hilary P., B. Anne Neville, Samuel C. Forster, and Trevor D. Lawley, 2017, “Transmission of the Gut Microbiota: Spreading of Health”, Nature Reviews Microbiology, 15(9): 531–543. doi:10.1038/nrmicro.2017.50 (Scholar)
Brucker, Robert M. and Seth R. Bordenstein, 2013, “The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia”, Science, 341(6146): 667–669. doi:10.1126/science.1240659 (Scholar)
Burian, Richard, 2004, The Epistemology of Development, Evolution, and Genetics, Cambridge: Cambridge University Press. doi:10.1017/cbo9780511610271 (Scholar)
Buskell, Andrew, 2019, “Reciprocal Causation and the Extended Evolutionary Synthesis”, Biological Theory, 14(4): 267–279. doi:10.1007/s13752-019-00325-7 (Scholar)
Calcott, Brett, 2009, “Lineage Explanations: Explaining How Biological Mechanisms Change”, The British Journal for the Philosophy of Science, 60(1): 51–78. doi:10.1093/bjps/axn047 (Scholar)
–––, 2013, “Why How and Why Aren’t Enough: More Problems with Mayr’s Proximate-Ultimate Distinction”, Biology & Philosophy, 28(5): 767–780. doi:10.1007/s10539-013-9367-1 (Scholar)
Charlesworth, Deborah, Nicholas H. Barton, and Brian Charlesworth, 2017, “The Sources of Adaptive Variation”, Proceedings of the Royal Society B: Biological Sciences, 284(1855): 20162864. doi:10.1098/rspb.2016.2864 (Scholar)
Chiu, Lynn and Scott F. Gilbert, 2015, “The Birth of the Holobiont: Multi-Species Birthing Through Mutual Scaffolding and Niche Construction”, Biosemiotics, 8(2): 191–210. doi:10.1007/s12304-015-9232-5 (Scholar)
–––, 2020, “Niche Construction and the Transition to Herbivory: Phenotype Switching and the Origination of New Nutritional Modes”, in Phenotype Switching: Implications in Biology and Medicine, Herbert Levine, Mohit Kumar Jolly, Prakash Kulkarni, and Vidyanand Nanjundiah, (eds), London: Elsevier, 459–482 (ch. 17). (Scholar)
Craver, Carl F., 2007, Explaining the Brain: Mechanisms and the Mosaic Unity of Neuroscience, Oxford: Oxford University Press, Clarendon Press. (Scholar)
Craver, Carl F. and William Bechtel, 2007, “Top-down Causation Without Top-down Causes”, Biology & Philosophy, 22(4): 547–563. doi:10.1007/s10539-006-9028-8 (Scholar)
Crawford, Charles, 1998, “The Theory of Evolution in the Study of Human Behavior: An Introduction and Overview”, in Handbook of Evolutionary Psychology: Ideas, Issues, and Application, Charles Crawford, and Dennis L. Krebs (eds), Hillsdale: Erlbaum, 3–41. (Scholar)
Crick, Francis, 1958, “On Protein Synthesis”, Symposium of the Society of Experimental Biology, 12: 138–63. (Scholar)
Daly, Martin and Margo Wilson, 1978, Sex, Evolution, and Behavior, Scituate, MA: Duxbury Press. (Scholar)
Darwin, Charles, 1837, Notebook B, in P. H. Barrett et al. (eds.), Charles Darwin’s Notebooks, 1836–1844; Geology, Transmutation of Species, Metaphysical Enquiries, Cambridge: Cambridge University Press, 1987. (Scholar)
–––, 1859, On the Origin of Species, London: Murray, Leipzig: Voss. (Scholar)
–––, 1868, The Variation of Plants and Animals under Domestication, 2 volumes, London: Murray. (Scholar)
Davidson, Eric H., 2001, Genomic Regulatory Systems: Development and Evolution, Boca Raton, FL: Academic Press. (Scholar)
–––, 2006, The Regulatory Genome: Gene Regulatory Networks in Development and Evolution, Boca Raton, FL: Academic Press. (Scholar)
Dawkins, Richard, 1976, The Selfish Gene, Oxford: Oxford University Press. (Scholar)
Day, Rachel L., Kevin N. Laland, and F. John Odling-Smee, 2003, “Rethinking Adaptation: The Niche-Construction Perspective”, Perspectives in Biology and Medicine, 46(1): 80–95. doi:10.1353/pbm.2003.0003 (Scholar)
de Beer, Gavin, 1954, Embryos and Ancestors, Oxford: Oxford University Press, 2^nd revised edition. (Scholar)
Debraw, John, 1777, “Discoveries on the Sex of Bees, Explaining the Manner in Which Their Species is Propagated”, Medical and Philosophical Commentaries, 5: 388–394. (Scholar)
Desbonnet, L., G. Clarke, F. Shanahan, T. G. Dinan, and J. F. Cryan, 2014, “Microbiota Is Essential for Social Development in the Mouse”, Molecular Psychiatry, 19(2): 146–148. doi:10.1038/mp.2013.65 (Scholar)
Dewsbury, Donald A., 1992, “Essay on Contemporary Issues in Ethology: On the Problems Studied in Ethology, Comparative Psychology, and Animal Behavior”, Ethology, 92(2): 89–107. doi:10.1111/j.1439-0310.1992.tb00951.x (Scholar)
–––, 1999, “The Proximate and the Ultimate: Past, Present, and Future”, Behavioural Processes, 46(3): 189–199. doi:10.1016/s0376-6357(99)00035-2 (Scholar)
Dickins, Thomas E. and Robert Barton, 2013, “The Extended Evolutionary Synthesis and the Role of Soft Inheritance in Evolution”, Biology & Philosophy, 28(5): 747–756. (Scholar)
Dickins, Thomas E. and Qazi Rahman, 2012, “Reciprocal Causation and the Proximate–Ultimate Distinction”, Proceedings of the Royal Society B: Biological Sciences, 279(1740): 2913–2921. doi:10.1098/rspb.2012.0273 (Scholar)
DiFrisco, James, 2019, “Homology and Homoplasy of Life Cycle Traits”, in Fusco 2019b: 71–82. (Scholar)
Dobzhansky, Theodosius, 1951, Genetics and the Origin of Species, New York: Columbia University Press, 3^rd edition. (Scholar)
Duckworth, Renee A., 2019, “Biological Dynamics and Evolutionary Causation”, in T. Ullner and K. N. Laland (eds.), Evolutionary Causation, Cambridge, MA: MIT Press, 153–72. (Scholar)
Dupras, Charles and Vardit Ravitsky, 2016, “Epigenetics in the Neoliberal ‘Regime of Truth’: A Biopolitical Perspective on Knowledge Translation”, Hastings Center Report, 46(1): 26–35. doi:10.1002/hast.522 (Scholar)
Dupré, John and Maureen A. O’Malley, 2009, “Varieties of Living Things: Life at the Intersection of Lineage and Metabolism”, Philosophy and Theory in Biology, 1: e003. doi:10.3998/ptb.6959004.0001.003 (Scholar)
Dupré, John and Stephan Guttinger, 2016, “Viruses as Living Processes”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 59: 109–116. doi:10.1016/j.shpsc.2016.02.010 (Scholar)
Esposito, Maurizio, 2016, Romantic Biology, 1890–1945, London: Routledge. (Scholar)
Fábregas-Tejeda, Alejandro, and Francisco Vergara-Silva, 2018, “The Emerging Structure of the Extended Evolutionary Synthesis: Where Does Evo-Devo Fit in?”, Theory in Biosciences, 52: 169–184. doi.org/10.1007/s12064-018-0269-2 (Scholar)
Fields, Chris and Michael Levin, forthcoming, “Scale‐Free Biology: Integrating Evolutionary and Developmental Thinking”, BioEssays, first online: 14 June 2020. doi:10.1002/bies.201900228 (Scholar)
Fields, Chris, Johanna Bischof, and Michael Levin, 2020, “Morphological Coordination: A Common Ancestral Function Unifying Neural and Non-Neural Signaling”, Physiology, 35(1): 16–30. doi:10.1152/physiol.00027.2019 (Scholar)
Fisher, Ronald A., 1930, The Genetical Theory of Natural Selection, Oxford: Clarendon Press. (Scholar)
Forber, Patrick, 2005, “On the Explanatory Roles of Natural Selection”, Biology & Philosophy, 20(2–3): 329–342. doi:10.1007/s10539-005-5588-2 (Scholar)
Francis, Richard C., 1990, “Causes, Proximate and Ultimate”, Biology & Philosophy, 5(4): 401–415. doi:10.1007/bf02207379 (Scholar)
Fusco, Giuseppe, 2019a, “Evo-Devo beyond Development: The Evolution of Life Cycles”, in Fusco 2019b: 311–318. (Scholar)
––– (ed.), 2019b, Perspectives on Evolutionary and Developmental Biology: Essays for Alessandro Minelli, Padova: Padova University Press. (Scholar)
Galant, Ron and Sean B. Carroll, 2002, “Evolution of a Transcriptional Repression Domain in an Insect Hox Protein”, Nature, 415(6874): 910–913. doi:10.1038/nature717 (Scholar)
Gardner, Andy, 2013, “Ultimate Explanations Concern the Adaptive Rationale for Organism Design”, Biology & Philosophy, 28(5): 787–791. doi:10.1007/s10539-013-9379-x (Scholar)
Garstang, Walter, 1922, “The Theory of Recapitulation: A Critical Re-Statement of the Biogenetic Law.”, Journal of the Linnean Society of London, Zoology, 35(232): 81–101. doi:10.1111/j.1096-3642.1922.tb00464.x (Scholar)
Gerhart, John and Marc Kirschner, 1997, Cells, Embryos and Evolution, Oxford: Blackwell. (Scholar)
Geschwind, Daniel H. and Genevieve Konopka, 2012, “Neuroscience: Genes and Brain Evolution.”, Nature, 496(7407): 481–482. (Scholar)
Gilbert, Scott F., 1991, “Epigenetic Landscaping: Waddington’s Use of Cell Fate Bifurcation Diagrams”, Biology & Philosophy, 6(2): 135–154. doi:10.1007/bf02426835 (Scholar)
–––, 2001, “Ecological Developmental Biology: Developmental Biology Meets the Real World”, Developmental Biology, 233(1): 1–12. doi:10.1006/dbio.2001.0210 (Scholar)
–––, 2003, “The Morphogenesis of Evolutionary Developmental Biology.”, International Journal of Developmental Biology, 47(7–8): 467–477. (Scholar)
–––, 2006, “The Generation of Novelty: The Province of Developmental Biology”, Biological Theory, 1(2): 209–212. doi:10.1162/biot.2006.1.2.209 (Scholar)
–––, 2009, “The Adequacy of Model Systems for Evo-Devo: Modeling the Formation of Organisms/ Modeling the Formation of Society”, in Mapping the Future of Biology: Evolving Concepts and Theories, Anouk Barberousse, Michel Morange, and Thomas Pradeu (eds.), (Boston Studies in the Philosophy of Science 266), Dordrecht: Springer Netherlands, 57–68. doi:10.1007/978-1-4020-9636-5_5 (Scholar)
–––, 2014, “A Holobiont Birth Narrative: The Epigenetic Transmission of the Human Microbiome”, Frontiers in Genetics, 5: art. 282. doi:10.3389/fgene.2014.00282 (Scholar)
–––, 2019, “Evolutionary Transitions Revisited: Holobiont Evo‐devo”, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 332(8): 307–314. doi:10.1002/jez.b.22903 (Scholar)
–––, 2020, “Developmental Symbiosis Facilitates the Multiple Origins of Herbivory”, Evolution & Development, 22(1–2): 154–164. doi:10.1111/ede.12291 (Scholar)
Gilbert, Scott F. and Jonathan Bard, 2014, “Formalizing Theories of Development: A Fugue on the Orderliness of Change”, in Minelli and Pradeu 2014: 129–143. doi:10.1093/acprof:oso/9780199671427.003.0008 (Scholar)
Gilbert, Scott F. and David Epel, 2015, Ecological Developmental Biology, 2^nd edition, Sunderland: Sinauer. (Scholar)
Gilbert, Scott F., Thomas C. G. Bosch, and Cristina Ledón-Rettig, 2015, “Eco-Evo-Devo: Developmental Symbiosis and Developmental Plasticity as Evolutionary Agents”, Nature Reviews Genetics, 16(10): 611–622. doi:10.1038/nrg3982 (Scholar)
Gilbert, Scott F., John M. Opitz, and Rudolf A. Raff, 1996, “Resynthesizing Evolutionary and Developmental Biology”, Developmental Biology, 173(2): 357–372. doi:10.1006/dbio.1996.0032 (Scholar)
Gilbert, Scott F., Jan Sapp, and Alfred I. Tauber, 2012, “A Symbiotic View of Life: We Have Never Been Individuals”, The Quarterly Review of Biology, 87(4): 325–341. doi:10.1086/668166 (Scholar)
Gilbert, Scott F. and Sahotra Sarkar, 2000, “Embracing Complexity: Organicism for the 21st Century”, Developmental Dynamics: An Official Publication of the American Association of Anatomists, 219(1): 1–9. (Scholar)
Gissis, Snait B. and Eva Jablonka, 2011, Transformations of Lamarckism: From Subtle Fluids to Molecular Biology, Cambridge, MA: MIT Press. (Scholar)
Godfrey-Smith, Peter, 1996, Complexity and the Function of Mind in Nature, Cambridge: Cambridge University Press. doi:10.1017/cbo9781139172714 (Scholar)
–––, 2009, Darwinian Populations and Natural Selection, Oxford: Oxford University Press. (Scholar)
–––, 2013, “Darwinian Individuals”, in From Groups to Individuals, Frédéric Bouchard, and Philippe Huneman (eds.), Cambridge, MA: MIT Press, 17–36. (Scholar)
Goethe, J.W. von, 1790. Versuch die Metamorphose der Pflanzen zu erklären, Gotha: Ettinger. (Scholar)
Goldschmidt, Richard, 1940, The Material Basis of Evolution, New Haven, CT: Yale University Press. (Scholar)
Goodwin, Brian, 1999, “Reclaiming a life of quality”, Journal of Consciousness Studies, 6: 229–235. (Scholar)
Gould, Stephen Jay, 1977, Ontogeny and Phylogeny, Cambridge, MA: Harvard University Press. (Scholar)
Gould, Stephen Jay and Richard C. Lewontin, 1979, “The Spandrels of San Marco and the Panglossian Paradigm: A Critique of the Adaptationist Programme”, Proceedings of the Royal Society of London. Series B. Biological Sciences, 205(1161): 581–598. doi:10.1098/rspb.1979.0086 (Scholar)
Green, Sara and Robert Batterman, 2017, “Biology Meets Physics: Reductionism and Multi-Scale Modeling of Morphogenesis”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 61: 20–34. doi:10.1016/j.shpsc.2016.12.003 (Scholar)
Griesemer, James, 2014, “Reproduction and Scaffolded Developmental Processes: An Integrated Evolutionary Perspective”, in Minelli and Pradeu 2014: 183–202. doi:10.1093/acprof:oso/9780199671427.003.0012 (Scholar)
Griffiths, Paul and Karola Stotz, 2013, Genetics and Philosophy: An Introduction, Cambridge: Cambridge University Press. doi:10.1017/cbo9780511744082 (Scholar)
Guenther, Catherine, Luiz Pantalena-Filho, and David M. Kingsley, 2008, “Shaping Skeletal Growth by Modular Regulatory Elements in the Bmp5 Gene”, PLoS Genetics, 4(12): e1000308. doi:10.1371/journal.pgen.1000308 (Scholar)
Guerrero-Bosagna, Carlos, 2012, “Finalism in Darwinian and Lamarckian Evolution: Lessons from Epigenetics and Developmental Biology”, Evolutionary Biology, 39(3): 283–300. doi:10.1007/s11692-012-9163-x (Scholar)
Guralnick, Robert, 2002, “A Recapitulation of the Rise and Fall of the Cell Lineage Research Program: The Evolutionary-Developmental Relationship of Cleavage to Homology, Body Plans and Life History”, Journal of the History of Biology, 35(3): 537–567. (Scholar)
Haeckel, Ernst, 1866, Generelle Morphologie der Organismen, 2 volumes, Berlin: Reimer. (Scholar)
–––, 1872, Biologie der Kalkschwämme (Calcispongien und Grantien), Berlin: Reimer. (Scholar)
Haig, David, 2011, “Lamarck Ascending!”, Philosophy and Theory in Biology, 3: e204. doi:10.3998/ptb.6959004.0003.004 (Scholar)
–––, 2013, “Proximate and Ultimate Causes: How Come? And What For?”, Biology & Philosophy, 28(5): 781–786. doi:10.1007/s10539-013-9369-z (Scholar)
Hall, Brian K., 2012, “Evolutionary Developmental Biology (Evo-Devo): Past, Present, and Future”, Evolution: Education and Outreach, 5(2): 184–193. doi:10.1007/s12052-012-0418-x (Scholar)
Hamburger, Viktor, 1980, “Embryology and the Modern Synthesis”, in The Evolutionary Synthesis: Perspectives on the Unification of Biology, Ernst Mayr and William B. Provine (eds), Cambridge, MA: Harvard University Press, 97–112. (Scholar)
Haraway, Donna J., 1976, Crystals, Fabrics, and Fields: Metaphors That Shape Embryos, New Haven, CT: Yale University Press. (Scholar)
–––, 2008, When Species Meet, Minneapolis, MN: University of Minnesota Press. (Scholar)
–––, 2016, Staying with the Trouble: Making Kin in the Chthulucene, Durham, NC: Duke University Press. (Scholar)
Harrison, Ross G., 1937, “Embryology and Its Relations”, Science, 85(2207): 369–374. doi:10.1126/science.85.2207.369 (Scholar)
Harwood, Jonathan, 1993, Styles of Scientific Thought: The German Genetics Community, 1900–1933, Chicago: University of Chicago Press. (Scholar)
Hedlund, Maria, 2012, “Epigenetic Responsibility”, Medicine Studies, 3(3): 171–183. doi:10.1007/s12376-011-0072-6 (Scholar)
Hendrikse, Jesse Love, Trish Elizabeth Parsons, and Benedikt Hallgrímsson, 2007, “Evolvability as the Proper Focus of Evolutionary Developmental Biology: Evolvability as the Central Question of Evo-Devo”, Evolution & Development, 9(4): 393–401. doi:10.1111/j.1525-142x.2007.00176.x (Scholar)
Herrera-Rincon, Celia, Jean-Francois Paré, Christopher J. Martyniuk, Sophia K. Jannetty, Christina Harrison, Alina Fischer, Alexandre Dinis, Vishal Keshari, Richard Novak, and Michael Levin, 2020, “An in Vivo Brain–Bacteria Interface: The Developing Brain as a Key Regulator of Innate Immunity”, NPJ Regenerative Medicine, 5(1): art. 2. doi:10.1038/s41536-020-0087-2 (Scholar)
Hertwig, Oskar, 1894, Zeit-und Streitfragen der Biologie (Volume I: Präformation oder Epigenese?), Jena: Gustav Fischer. (Scholar)
Hinman, Veronica F. and Alys M. Cheatle Jarvela, 2014, “Developmental Gene Regulatory Network Evolution: Insights from Comparative Studies in Echinoderms: Developmental Gene Regulatory Network Evolution”, Genesis, 52(3): 193–207. doi:10.1002/dvg.22757 (Scholar)
Hinman, Veronica F., Albert T. Nguyen, R. Andrew Cameron, and Eric H. Davidson, 2003, “Developmental Gene Regulatory Network Architecture across 500 Million Years of Echinoderm Evolution”, Proceedings of the National Academy of Sciences, 100(23): 13356–13361. doi:10.1073/pnas.2235868100 (Scholar)
Holterhoff, Kate, 2014, “The History and Reception of Charles Darwin’s Hypothesis of Pangenesis”, Journal of the History of Biology, 47(4): 661–695. doi:10.1007/s10739-014-9377-0 (Scholar)
Hooper, Lora V., Melissa H. Wong, Anders Thelin, Lennart Hansson, Per G. Falk, and Jeffrey I. Gordon, 2001, “Molecular Analysis of Commensal Host-Microbial Relationships in the Intestine”, Science, 291(5505): 881–884. doi:10.1126/science.291.5505.881 (Scholar)
Hopwood, Nick, 2007, “A History of Normal Plates, Tables and Stages in Vertebrate Embryology”, The International Journal of Developmental Biology, 51(1): 1–26. doi:10.1387/ijdb.062189nh (Scholar)
Hull, David L., 1980, “Individuality and Selection”, Annual Review of Ecology and Systematics, 11: 311–332. doi:10.1146/annurev.es.11.110180.001523 (Scholar)
Huneman, Philippe and Denis Walsh (eds.), 2017, Challenging the Modern Synthesis: Adaptation, Development, and Inheritance, Oxford: Oxford University Press. doi:10.1093/oso/9780199377176.001.0001 (Scholar)
Huxley, Thomas H., 1888, “The Struggle for Existence in Human Society”, in T. H. Huxley, 1894, Evolution and Ethics and Other Essays, New York: Appletons, 195–236. (Scholar)
Illari, Phyllis McKay and Jon Williamson, 2012, “What Is a Mechanism? Thinking about Mechanisms across the Sciences”, European Journal for Philosophy of Science, 2(1): 119–135. doi:10.1007/s13194-011-0038-2 (Scholar)
Jablonka, Eva and Marion J. Lamb, 1989, “The Inheritance of Acquired Epigenetic Variations”, Journal of Theoretical Biology, 139(1): 69–83. doi:10.1016/s0022-5193(89)80058-x (Scholar)
–––, 2014, Evolution in Four Dimensions: Genetic, Epigenetic, Behavioral, and Symbolic Variation in the History of Life, 2^nd edition, Cambridge: MIT, MA Press. (Scholar)
Jablonka, Eva and Gal Raz, 2009, “Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution”, The Quarterly Review of Biology, 84(2): 131–176. doi:10.1086/598822 (Scholar)
Jablonski, David, 2017, “Approaches to Macroevolution: 1. General Concepts and Origin of Variation”, Evolutionary Biology, 44(4): 427–450. doi:10.1007/s11692-017-9420-0 (Scholar)
Jacob, F., 1977, “Evolution and Tinkering”, Science, 196(4295): 1161–1166. doi:10.1126/science.860134 (Scholar)
Jaeger, Johannes and James Sharpe, 2014, “On the Concept of Mechanism in Development”, in Minelli and Pradeu 2014: 56–78. doi:10.1093/acprof:oso/9780199671427.003.0004 (Scholar)
Johannsen, Wilhelm, 1909, Elemente der Exakten Erblichkeitslehre, Jena: Gustav Fischer. (Scholar)
Kappeler, Laurent and Michael J. Meaney, 2010, “Epigenetics and Parental Effects”, BioEssays, 32(9): 818–827. doi:10.1002/bies.201000015 (Scholar)
Kant, Immanuel, 1790/93 [1902], Kritik der Urteilskraft (Kants gesammelte Schriften, Vol. 5, Academy Edition), Königlich Preußische Akademie der Wissenschaften (ed.), Berlin: Reimer. (Scholar)
Keller, Evelyn Fox, 2002, The Century of the Gene, Cambridge, MA: Harvard University Press. (Scholar)
–––, 2010, The Mirage of a Space between Nature and Nurture, Durham, NC: Duke University Press. (Scholar)
King, M.C. and A.C. Wilson, 1975, “Evolution at Two Levels in Humans and Chimpanzees”, Science, 188(4184): 107–116. doi:10.1126/science.1090005 (Scholar)
Kirjavainen, Pirkka V., Anne M. Karvonen, Rachel I. Adams, Martin Täubel, Marjut Roponen, Pauli Tuoresmäki, Georg Loss, Balamuralikrishna Jayaprakash, Martin Depner, Markus Johannes Ege, et al., 2019, “Farm-like Indoor Microbiota in Non-Farm Homes Protects Children from Asthma Development”, Nature Medicine, 25(7): 1089–1095. doi:10.1038/s41591-019-0469-4 (Scholar)
Laland, Kevin N., John Odling-Smee, and Scott F. Gilbert, 2008, “EvoDevo and Niche Construction: Building Bridges”, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 310B(7): 549–566. doi:10.1002/jez.b.21232 (Scholar)
Laland, Kevin N., Kim Sterelny, John Odling-Smee, William Hoppitt, and Tobias Uller, 2011, “Cause and Effect in Biology Revisited: Is Mayr’s Proximate-Ultimate Dichotomy Still Useful?”, Science, 334(6062): 1512–1516. doi:10.1126/science.1210879 (Scholar)
Laland, Kevin N., John Odling-Smee, William Hoppitt, and Tobias Uller, 2013a, “More on How and Why: Cause and Effect in Biology Revisited”, Biology & Philosophy, 28(5): 719–745. doi:10.1007/s10539-012-9335-1 (Scholar)
–––, 2013b, “More on How and Why: A Response to Commentaries”, Biology & Philosophy, 28(5): 793–810. doi:10.1007/s10539-013-9380-4 (Scholar)
Laland, Kevin, Tobias Uller, Marc Feldman, Kim Sterelny, Gerd B. Müller, Armin Moczek, Eva Jablonka, John Odling-Smee, 2014, “Does Evolutionary Theory Need a Rethink? Yes, Urgently”, Nature News, 514 (7521): 161–164. doi:10.1038/514161a">10.1038/514161a (Scholar)
Laland, Kevin N., Tobias Uller, Marcus W. Feldman, Kim Sterelny, Gerd B. Müller, Armin Moczek, Eva Jablonka, and John Odling-Smee, 2015, “The Extended Evolutionary Synthesis: Its Structure, Assumptions and Predictions”, Proceedings of the Royal Society B: Biological Sciences, 282(1813): 20151019. doi:10.1098/rspb.2015.1019 (Scholar)
Lange, Marc, 2007, “Laws and Theories”, in A Companion to the Philosophy of Biology, Sahotra Sarkar and Anja Plutynski (eds), Oxford: Wiley, 489–505. (Scholar)
Laubichler, Manfred D., 2010, “Evolutionary Developmental Biology Offers a Significant Challenge to the Neo-Darwinian Paradigm”, in Contemporary Debates in Philosophy of Biology, Francisco J. Avalaessor and Robert Arp (eds), Malden, MA: Wiley-Blackwell, 199–212. (Scholar)
Laubichler, Manfred D. and Jürgen Renn, 2015, “Extended Evolution: A Conceptual Framework for Integrating Regulatory Networks and Niche Construction”, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 324(7): 565–577. doi:10.1002/jez.b.22631 (Scholar)
Laubichler, Manfred D. and Jane Maienschein, 2007, From Embryology to Evo-Devo: A History of Developmental Evolution, Cambridge, MA: MIT Press. (Scholar)
Laufer, Ed, Sandrine Pizette, Hongyan Zou, Olivia E. Orozco, and Lee Niswander, 1997, “BMP Expression in Duck Interdigital Webbing: A Reanalysis”, Science, 278(5336): 305. doi:10.1126/science.278.5336.305 (Scholar)
Lenoir, Timothy, 1982, The Strategy of Life: Teleology and Mechanics in Nineteenth Century German Biology, Dordrecht: D. Reidel. (Scholar)
Levin, Michael, 2019, “The Computational Boundary of a ‘Self’: Developmental Bioelectricity Drives Multicellularity and Scale-Free Cognition”, Frontiers in Psychology, 10: 2688. doi:10.3389/fpsyg.2019.02688 (Scholar)
Levin, Simon A., 1992, “The Problem of Pattern and Scale in Ecology: The Robert H. MacArthur Award Lecture”, Ecology, 73(6): 1943–1967. doi:10.2307/1941447 (Scholar)
Levine, Michael and Eric H. Davidson, 2005, “Gene Regulatory Networks for Development”, Proceedings of the National Academy of Sciences, 102(14): 4936–4942. doi:10.1073/pnas.0408031102 (Scholar)
Levis, Nicholas A. and David W. Pfennig, 2020, “Plasticity‐led Evolution: A Survey of Developmental Mechanisms and Empirical Tests”, Evolution & Development, 22(1–2): 71–87. doi:10.1111/ede.12309 (Scholar)
Lewontin, Richard C., 1982, “Organism and Environment”, in H.C. Plotkin, Learning, Development, and Culture: Essays in Evolutionary Epistemology, New York: Wiley, 151–172. (Scholar)
Lickliter, Robert and Thomas D Berry, 1990, “The Phylogeny Fallacy: Developmental Psychology’s Misapplication of Evolutionary Theory”, Developmental Review, 10(4): 348–364. doi:10.1016/0273-2297(90)90019-z (Scholar)
Lillie, Frank Rattray, 1898, “Adaptation in Cleavage”, In Biological Lectures from the Marine Biological Laboratory, Woods Hole, Massachusetts, Boston: Ginn, 43–67. (Scholar)
Lloyd, Vett K., Jennifer A. Brisson, Kathleen A. Fitzpatrick, Lori A. McEachern, and Eveline C. Verhulst, 2012, “The Epigenetics of Emerging and Nonmodel Organisms”, Genetics Research International, 2012: 1–2. doi:10.1155/2012/491204 (Scholar)
Love, Alan C., 2003, “Evolutionary Morphology, Innovation, and the Synthesis of Evolutionary and Developmental Biology”, Biology & Philosophy, 18(2): 309–345. doi:10.1023/a:1023940220348 (Scholar)
–––, 2009, “Marine Invertebrates, Model Organisms, and the Modern Synthesis: Epistemic Values, Evo-Devo, and Exclusion”, Theory in Biosciences, 128: 19–42. (Scholar)
–––, 2010, “Idealization in Evolutionary Developmental Investigation: A Tension between Phenotypic Plasticity and Normal Stages”, Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1540): 679–690. doi:10.1098/rstb.2009.0262 (Scholar)
–––, 2018, “Developmental mechanisms”, in S. Glennan, and P. Illari (eds.), The Routledge handbook of the philosophy of mechanisms and mechanical philosophy, New York: Routledge, 332–347 (Scholar)
Love, Alan C. and Andreas Hüttemann, 2011, “Comparing Part-Whole Reductive Explanations in Biology and Physics”, in Explanation, Prediction, and Confirmation, Dennis Dieks, Wenceslao J. Gonzalez, Stephan Hartmann, Thomas Uebel, and Marcel Weber (eds.), Dordrecht: Springer Netherlands, 183–202. doi:10.1007/978-94-007-1180-8_13 (Scholar)
Machamer, Peter, Lindley Darden, and Carl F. Craver, 2000, “Thinking about Mechanisms”, Philosophy of Science, 67(1): 1–25. doi:10.1086/392759 (Scholar)
Maienschein, Jane, 2003, Whose View of Life? Embryos, Cloning, and Stem Cells, Cambridge, MA: Harvard University Press. (Scholar)
Marchionni, Caterina and Jack Vromen, 2009, “The Ultimate/Proximate Distinction in Recent Accounts of Human Cooperation”, Tijdschrift Voor Filosofie, 71(1): 87–117. (Scholar)
Margulis, Lynn, 1999, Symbiotic Planet: A New Look on Evolution, New York: Basic Books. (Scholar)
Martínez, Maximiliano and Maurizio Esposito, 2014, “Multilevel Causation and the Extended Synthesis”, Biological Theory, 9(2): 209–220. doi:10.1007/s13752-014-0161-3 (Scholar)
Maynard Smith, John, 1982, Evolution and the Theory of Games, Cambridge: Cambridge University Press. doi:10.1017/cbo9780511806292 (Scholar)
Mayr, Ernst, 1961, “Cause and Effect in Biology: Kinds of Causes, Predictability, and Teleology Are Viewed by a Practicing Biologist”, Science, 134(3489): 1501–1506. doi:10.1126/science.134.3489.1501 (Scholar)
McFall-Ngai, Margaret J., 2002, “Unseen Forces: The Influence of Bacteria on Animal Development”, Developmental Biology, 242(1): 1–14. doi:10.1006/dbio.2001.0522 (Scholar)
McFall-Ngai, Margaret, Michael G. Hadfield, Thomas C. G. Bosch, Hannah V. Carey, Tomislav Domazet-Lošo, Angela E. Douglas, Nicole Dubilier, Gerard Eberl, Tadashi Fukami, Scott F. Gilbert, et al., 2013, “Animals in a Bacterial World, a New Imperative for the Life Sciences”, Proceedings of the National Academy of Sciences, 110(9), National Academy of Sciences: 3229–3236. doi:10.1073/pnas.1218525110 (Scholar)
Mc Manus, Fabrizzio, 2012, “Development and Mechanistic Explanation”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 43(2): 532–541. doi:10.1016/j.shpsc.2011.12.001 (Scholar)
Meckel, J.F., 1812, “Entwurf einer Darstellung der zwischen dem Embryozustande der höheren Thiere und dem permanenten der nidern stattfindenden Parallele”, Meckels Beiträge zur vergleichenden Anatomie, 2(1): 1–60. (Scholar)
Menzies, Peter, 2012, “The Causal Structure of Mechanisms”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 43(4): 796–805. doi:10.1016/j.shpsc.2012.05.008 (Scholar)
Merino, R., J. Rodríguez-Leon, D. Macias, Y. Gañan, A. N. Economides, and J. M. Hurle, 1999, “The BMP Antagonist Gremlin Regulates Outgrowth, Chondrogenesis and Programmed Cell Death in the Developing Limb”, Development, 126(23): 5515–5522. (Scholar)
Mesoudi, Alex, Simon Blanchet, Anne Charmantier, Étienne Danchin, Laurel Fogarty, Eva Jablonka, Kevin N. Laland, Thomas J. H. Morgan, Gerd B. Müller, F. John Odling-Smee, and Benoît Pujol, 2013, “Is Non-Genetic Inheritance Just a Proximate Mechanism? A Corroboration of the Extended Evolutionary Synthesis”, Biological Theory, 7(3): 189–195. doi:10.1007/s13752-013-0091-5 (Scholar)
Minelli, Alessandro, 2009, Forms of Becoming: The Evolutionary Biology of Development, Princeton, NJ: Princeton University Press. (Scholar)
–––, 2016, “Scaffolded Biology”, Theory in Biosciences, 135(3): 163–173. doi:10.1007/s12064-016-0230-1 (Scholar)
Minelli, Alessandro and Jan Baedke, 2014, “Model Organisms in Evo-Devo: Promises and Pitfalls of the Comparative Approach”, History and Philosophy of the Life Sciences, 36(1): 42–59. doi:10.1007/s40656-014-0004-3 (Scholar)
Minelli, Alessandro and Thomas Pradeu (eds.), 2014, Towards a Theory of Development, Oxford: Oxford University Press. doi:10.1093/acprof:oso/9780199671427.001.0001 (Scholar)
Moczek, Armin P., 2015, “Re-Evaluating the Environment in Developmental Evolution”, Frontiers in Ecology and Evolution, 3: art. 7. doi:10.3389/fevo.2015.00007 (Scholar)
Moczek, Armin P., Karen E. Sears, Angelika Stollewerk, Patricia J. Wittkopp, Pamela Diggle, Ian Dworkin, Cristina Ledon-Rettig, David Q. Matus, Siegfried Roth, Ehab Abouheif, Federico D. Brown, Chi-Hua Chiu, C. Sarah Cohen, Anthony W. De Tomaso, Scott F. Gilbert, Brian Hall, Alan C. Love, Deirdre C. Lyons, Thomas J. Sanger, Joel Smith, et al., 2015, “The Significance and Scope of Evolutionary Developmental Biology: A Vision for the 21st Century: The Significance and Scope of Evolutionary Developmental Biology”, Evolution & Development, 17(3): 198–219. doi:10.1111/ede.12125 (Scholar)
Morse, Douglass H., 1980, Behavioral Mechanisms in Ecology, Cambridge, MA: Harvard University Press. (Scholar)
Müller, Fritz, 1864, Für Darwin, Leipzig: W. Engelmann. English translation: Facts and Arguments for Darwin, W. S. Dallas (trans.), London: John Murray, 1869. (Scholar)
Müller, Gerd B., 2007, “Evo–Devo: Extending the Evolutionary Synthesis”, Nature Reviews Genetics, 8(12): 943–949. doi:10.1038/nrg2219 (Scholar)
–––, 2017, “Why an Extended Evolutionary Synthesis Is Necessary”, Interface Focus, 7(5): 20170015. doi:10.1098/rsfs.2017.0015 (Scholar)
Neander, Karen, 1995, “Pruning the Tree of Life”, The British Journal for the Philosophy of Science, 46(1): 59–80. doi:10.1093/bjps/46.1.59 (Scholar)
Newman, Stuart A, 2002, “Developmental Mechanisms: Putting Genes in Their Place”, Journal of Biosciences, 27(2): 97–104. doi:10.1007/bf02703765 (Scholar)
Nicholson, Daniel J., 2014, “The Return of the Organism as a Fundamental Explanatory Concept in Biology: The Return of the Organism”, Philosophy Compass, 9(5): 347–359. doi:10.1111/phc3.12128 (Scholar)
–––, 2018, “Reconceptualizing the Organism: From Complex Machine to Flowing Stream”, in Nicholson, and Dupré 2018: 139–166. (Scholar)
Nicholson, Daniel J.,and John Dupré, 2018, Everything Flows: Towards a Processual Philosophy of Biology, Oxford: Oxford University Press. doi:10.1093/oso/9780198779636.001.0001
Nicoglou, Antonine, 2018, “Waddington’s Epigenetics or the Pictorial Meetings of Development and Genetics”, History and Philosophy of the Life Sciences, 40(4): art. 61. doi:10.1007/s40656-018-0228-8 (Scholar)
Niewöhner, Jörg, 2011, “Epigenetics: Embedded Bodies and the Molecularisation of Biography and Milieu”, BioSocieties, 6(3): 279–298. doi:10.1057/biosoc.2011.4 (Scholar)
Nijhout, H. F., 1990, “Problems and Paradigms: Metaphors and the Role of Genes in Development”, BioEssays, 12(9): 441–446. doi:10.1002/bies.950120908 (Scholar)
–––, 2002, “The Nature of Robustness in Development”, BioEssays, 24(6): 553–563. doi:10.1002/bies.10093 (Scholar)
Nyhart, Lynn K. 1995, Biology Takes Form: Animal Morphology and the German Universities, 1800–1900, Chicago: University of Chicago Press. (Scholar)
Odling-Smee, F. John, Kevin N. Laland, and Marcus W. Feldman, 2003, Niche Construction: The Neglected Process in Evolution, Princeton, NJ: Princeton University Press. (Scholar)
O’Malley, Maureen A., 2015, “Endosymbiosis and Its Implications for Evolutionary Theory”, Proceedings of the National Academy of Sciences, 112(33), National Academy of Sciences: 10270–10277. doi:10.1073/pnas.1421389112 (Scholar)
–––, 2017, “From Endosymbiosis to Holobionts: Evaluating a Conceptual Legacy”, Journal of Theoretical Biology, 434: 34–41. doi:10.1016/j.jtbi.2017.03.008 (Scholar)
Osmanovic, Dino, David A. Kessler, Yitzhak Rabin, and Yoav Soen, 2018, “Darwinian Selection of Host and Bacteria Supports Emergence of Lamarckian-like Adaptation of the System as a Whole”, Biology Direct, 13(1): art. 24. doi:10.1186/s13062-018-0224-7 (Scholar)
Otsuka, Jun, 2015, “Using Causal Models to Integrate Proximate and Ultimate Causation”, Biology & Philosophy, 30(1): 19–37. doi:10.1007/s10539-014-9448-9 (Scholar)
Owen, Richard, 1837 [1992], The Hunterian Lectures in Comparative Anatomy, May and June 1837, Phillip Reid Sloan (ed.), Chicago: University of Chicago Press. (Scholar)
Oyama, Susan, 1985, The Ontogeny of Information: Developmental Systems and Evolution, Cambridge: Cambridge University Press. (Scholar)
Peacock, Kent A., 2011, “Symbiosis in Ecology and Evolution”, in Philosophy of Ecology, Kevin deLaplante, Bryson Brown, and Kent A. Peacock (eds.), (Handbook of the Philosophy of Science 11), Amsterdam: Elsevier, 219–250. doi:10.1016/b978-0-444-51673-2.50009-1 (Scholar)
Perez, M. F., and B. Lehner, 2019, “Intergenerational and Transgenerational Epigenetic Inheritance in Animals”, Nature Cell Biology, 21 (2): 143–51. (Scholar)
Peterson, Erik L., 2017, The Life Organic: The Theoretical Biology Club and the Roots of Epigenetics, Pittsburgh, PA: University of Pittsburgh Press. (Scholar)
Piaget, Jean, 1976 [1978], La Comportement Moteur de l’Evolution, Paris: Gallimard. Translated as Behavior and Evolution, George-Anne Roberts (trans.), New York: Pantheon. (Scholar)
Pickersgill, Martyn, Jörg Niewöhner, Ruth Müller, Paul Martin, and Sarah Cunningham-Burley, 2013, “Mapping the New Molecular Landscape: Social Dimensions of Epigenetics”, New Genetics and Society, 32(4): 429–447. doi:10.1080/14636778.2013.861739 (Scholar)
Pigliucci, Massimo, 2001, Phenotypic Plasticity: Beyond Nature and Nurture, Baltimore, MD: Johns Hopkins University Press. (Scholar)
–––, 2010, “Genotype–Phenotype Mapping and the End of the ‘Genes as Blueprint’ Metaphor”, Philosophical Transactions of the Royal Society B: Biological Sciences, 365(1540): 557–566. doi:10.1098/rstb.2009.0241 (Scholar)
Pigliucci, Massimo and Gerd B. Müller (eds.), 2010, Evolution: The Extended Synthesis, Cambridge, MA: MIT Press. (Scholar)
Pittendrigh, Colin S., 1958, “Adaptation, Natural Selection, and Behavior”, in Behavior and Evolution, Anne Roe and George Gaylord Simpson (eds), New Haven, CT: Yale University Press, 390–416 (Scholar)
Pollard, Katherine S., Sofie R. Salama, Nelle Lambert, Marie-Alexandra Lambot, Sandra Coppens, Jakob S. Pedersen, Sol Katzman, Bryan King, Courtney Onodera, Adam Siepel, Andrew D. Kern, Colette Dehay, Haller Igel, Manuel Ares, Pierre Vanderhaeghen, and David Haussler, 2006, “An RNA Gene Expressed during Cortical Development Evolved Rapidly in Humans”, Nature, 443(7108): 167–172. doi:10.1038/nature05113 (Scholar)
Pradeu, Thomas, 2016, “Organisms or Biological Individuals? Combining Physiological and Evolutionary Individuality”, Biology & Philosophy, 31(6): 797–817. doi:10.1007/s10539-016-9551-1 (Scholar)
Provine, Will B., 1989, “Progress in Evolution and Meaning in Life”, in Matthew H. Nitecki, Evolutionary Progress, Chicago: University of Chicago Press, 49–74. (Scholar)
Radersma, Reinder, Daniel W.A. Noble, and Tobias Uller, forthcoming, “Plasticity Leaves a Phenotypic Signature during Local Adaptation”, Evolution Letters, first online: 9 June 2020. doi:10.1002/evl3.185 (Scholar)
Raff, Rudolf A., 1996, The Shape of Life: Genes, Development, and the Evolution of Animal Form, Chicago: University of Chicago Press. (Scholar)
–––, 2000, “Evo-Devo: The Evolution of a New Discipline”, Nature Reviews Genetics, 1(1): 74–79. doi:10.1038/35049594 (Scholar)
Raff, Rudolf A. and Thomas C. Kaufman, 1983, Embryos, Genes, and Evolution, New York: Macmillan Co. (Scholar)
Rajakumar, Rajendhran, Sophie Koch, Mélanie Couture, Marie-Julie Favé, Angelica Lillico-Ouachour, Travis Chen, Giovanna De Blasis, Arjuna Rajakumar, Dominic Ouellette, and Ehab Abouheif, 2018, “Social Regulation of a Rudimentary Organ Generates Complex Worker-Caste Systems in Ants”, Nature, 562(7728): 574–577. doi:10.1038/s41586-018-0613-1 (Scholar)
Rasmussen, Nicholas, 1991, “The Decline of Recapitulationism in Early Twentieth-Century Biology: Disciplinary Conflict and Consensus on the Battleground of Theory”, Journal of the History of Biology, 24(1): 51–89. doi:10.1007/bf00130474 (Scholar)
Richardson, Michael K. and Helmut H. A. Oelschlager, 2002, “Time, Pattern, and Heterochrony: A Study of Hyperphalangy in the Dolphin Embryo Flipper”, Evolution and Development, 4(6): 435–444. doi:10.1046/j.1525-142x.2002.02032.x (Scholar)
Richardson, Sarah S., Cynthia R. Daniels, Matthew W. Gillman, Janet Golden, Rebecca Kukla, Christopher Kuzawa, and Janet Rich-Edwards, 2014, “Society: Don’t Blame the Mothers”, Nature, 512(7513): 131–132. doi:10.1038/512131a (Scholar)
Rilling, James K. and Larry J. Young, 2014, “The Biology of Mammalian Parenting and Its Effect on Offspring Social Development”, Science, 345(6198): 771–776. doi:10.1126/science.1252723 (Scholar)
Rosenberg, Eugene and Ilana Zilber-Rosenberg, 2016, “Microbes Drive Evolution of Animals and Plants: The Hologenome Concept”, mBio, 7(2): e01395-15, /mbio/7/2/e01395-15.atom. doi:10.1128/mbio.01395-15 (Scholar)
Roughgarden, Joan, 2020, “Holobiont Evolution: Mathematical Model with Vertical vs. Horizontal Microbiome Transmission”, Philosophy, Theory, and Practice in Biology, 12: 20200608. doi:10.3998/ptpbio.16039257.0012.002 (Scholar)
Roughgarden, Joan, Scott F. Gilbert, Eugene Rosenberg, Ilana Zilber-Rosenberg, and Elisabeth A. Lloyd, 2018, “Holobionts as Units of Selection and a Model of Their Population Dynamics and Evolution”, Biological Theory, 13(1): 44–65. doi:10.1007/s13752-017-0287-1 (Scholar)
Russell, E. S., 1950, “The ‘Drive’ Element in Life”, The British Journal for the Philosophy of Science, I(2): 108–116. doi:10.1093/bjps/i.2.108 (Scholar)
Sansom, Roger and Robert N. Brandon, 2007, Integrating Evolution and Development: From Theory to Practice, Cambridge, MA: MIT Press. (Scholar)
Sapp, Jan, 1983, “The Struggle for Authority in the Field of Heredity, 1900–1932: New Perspectives on the Rise of Genetics”, Journal of the History of Biology, 16(3): 311–342. (Scholar)
Sarkar, Sahotra, 1998, Genetics and Reductionism, Cambridge: Cambridge University Press. doi:10.1017/cbo9781139173216 (Scholar)
–––, 1999, “From the Reaktionsnorm to the Adaptive Norm: The Norm of Reaction, 1906–1960”, Biology and Philosophy, 14: 235–252. (Scholar)
Schelling, Friedrich W. J., 1798, Von der Weltseele: Eine Hypothese der höhern Physik zur Erklärung des allgemeinen Organismus, Hamburg: Perthes. (Scholar)
Schlichting, Carl D. and Massimo Pigliucci, 1998, Phenotypic Evolution: A Reaction Norm Perspective, Sunderland, MA: Sinauer. (Scholar)
Scholl, Raphael and Massimo Pigliucci, 2015, “The Proximate–Ultimate Distinction and Evolutionary Developmental Biology: Causal Irrelevance versus Explanatory Abstraction”, Biology & Philosophy, 30(5): 653–670. doi:10.1007/s10539-014-9427-1 (Scholar)
Scott-Phillips, Thomas C., Thomas E. Dickins, and Stuart A. West, 2011, “Evolutionary Theory and the Ultimate–Proximate Distinction in the Human Behavioral Sciences”, Perspectives on Psychological Science, 6(1): 38–47. doi:10.1177/1745691610393528 (Scholar)
Sharon, Gil, Daniel Segal, John M. Ringo, Abraham Hefetz, Ilana Zilber-Rosenberg, and Eugene Rosenberg, 2010, “Commensal Bacteria Play a Role in Mating Preference of Drosophila Melanogaster”, Proceedings of the National Academy of Sciences, 107(46): 20051–20056. doi:10.1073/pnas.1009906107 (Scholar)
Sharon, Gil, Nikki Jamie Cruz, Dae-Wook Kang, Michael J. Gandal, Bo Wang, Young-Mo Kim, Erika M. Zink, et al., 2019, “Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice”, Cell, 177(6): 1600-1618.e17. doi:10.1016/j.cell.2019.05.004 (Scholar)
Simpson, George Gaylord, 1953, “The Baldwin Effect”, Evolution, 7(2): 110–117. doi:10.1111/j.1558-5646.1953.tb00069.x (Scholar)
Sober, Elliott, 1984, The Nature of Selection: Evolutionary Theory in Philosophical Focus, Chicago: University of Chicago Press. (Scholar)
Spencer, Herbet, 1852 [1891], “The Development Hypothesis”, in his Essays, volume 1, London: Williams and Norgate, 1–7. (Scholar)
Stegmann, Ulrich E., 2010, “What Can Natural Selection Explain?”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 41(1): 61–66. doi:10.1016/j.shpsc.2009.12.002 (Scholar)
Sterelny, Kim, 1992, “Evolutionary Explanations of Human Behaviour”, Australasian Journal of Philosophy, 70(2): 156–173. doi:10.1080/00048409212345051 (Scholar)
–––, 2001, “Niche Construction, Developmental Systems, and the Extended Replicator”, in Cycles of Contingency: Developmental Systems and Evolution, Susan Oyama, Paul E. Griffiths, and Russell D. Gray (eds.), Cambridge, MA: MIT Press, 333–349. (Scholar)
Suárez, Javier, 2018, “The Importance of Symbiosis in Philosophy of Biology: An Analysis of the Current Debate on Biological Individuality and Its Historical Roots”, Symbiosis, 76(2): 77–96. doi:10.1007/s13199-018-0556-1 (Scholar)
Sultan, Sonia E., 2015, Organism and Environment: Ecological Development, Niche Construction, and Adaptation, New York: Oxford University Press. (Scholar)
Suzuki, Yuichiro and H. Frederik Nijhout, 2006, “Evolution of a Polyphenism by Genetic Accommodation”, Science, 311(5761): 650–652. doi:10.1126/science.1118888 (Scholar)
–––, 2008, “Genetic Basis of Adaptive Evolution of a Polyphenism by Genetic Accommodation: Genetic Basis of Genetic Accommodation”, Journal of Evolutionary Biology, 21(1): 57–66. doi:10.1111/j.1420-9101.2007.01464.x (Scholar)
Svensson, Erik I., 2018, “On Reciprocal Causation in the Evolutionary Process”, Evolutionary Biology, 45(1): 1–14. doi:10.1007/s11692-017-9431-x (Scholar)
Thierry, B., 2005, “Integrating Proximate and Ultimate Causation: Just One More Go!”, Current Science, 89(7): 1180–1183. (Scholar)
Tinbergen, Nikolaas, 1951, The Study of Instinct, Oxford: Clarendon Press. (Scholar)
–––, 1963, “On Aims and Methods of Ethology”, Zeitschrift Für Tierpsychologie, 20(4): 410–33. (Scholar)
Uller, Tobias, Nathalie Feiner, Reinder Radersma, Illiam S. C. Jackson, and Alfredo Rago, 2020, “Developmental Plasticity and Evolutionary Explanations”, Evolution & Development, 22(1–2): 47–55. doi:10.1111/ede.12314 (Scholar)
Uller, Tobias and Heikki Helanterä, 2019, “Niche Construction and Conceptual Change in Evolutionary Biology”, The British Journal for the Philosophy of Science, 70(2): 351–375. doi:10.1093/bjps/axx050 (Scholar)
Uller, Tobias and Kevin N. Laland, (eds.), 2019, Evolutionary Causation, Cambridge, MA: MIT Press. (Scholar)
von Dassow, George, Eli Meir, Edwin M. Munro, and Garrett M. Odell, 2000, “The Segment Polarity Network Is a Robust Developmental Module”, Nature, 406(6792): 188–192. doi:10.1038/35018085 (Scholar)
Waddington, C. H., 1942, “The Epigenotype”, Endeavour, 1: 18–20. (Scholar)
–––, 1957, The Strategy of the Genes: A Discussion of Some Aspects of Theoretical Biology, London: Allen & Unwin. (Scholar)
Waggoner, Miranda R. and Tobias Uller, 2015, “Epigenetic Determinism in Science and Society”, New Genetics and Society, 34(2): 177–195. doi:10.1080/14636778.2015.1033052 (Scholar)
Wagner, Günter P., 2014, Homology, Genes, and Evolutionary Innovation, Princeton, NJ: Princeton University Press. (Scholar)
Wallace, Bruce, 1986, “Can Embryologists Contribute to an Understanding of Evolutionary Mechanisms?”, in Integrating Scientific Disciplines, William Bechtel (ed.), (Science and Philosophy 2), Dordrecht: Springer Netherlands, 149–163. doi:10.1007/978-94-010-9435-1_9 (Scholar)
Walsh, D. M., 2015, Organisms, Agency, and Evolution, Cambridge: Cambridge University Press. doi:10.1017/cbo9781316402719 (Scholar)
Weismann, August, 1892, Das Keimplasma. Eine Theorie Der Vererbung, Jena: Fischer. (Scholar)
West-Eberhard, Mary Jane, 2003, Developmental Plasticity and Evolution, Oxford: Oxford University Press. (Scholar)
–––, 2005, “Developmental Plasticity and the Origin of Species Differences”, Proceedings of the National Academy of Sciences, 102(suppl 1), National Academy of Sciences: 6543–6549. doi:10.1073/pnas.0501844102 (Scholar)
Williams, George C., 1966, Adaptation and Natural Selection: A Critique of Some Current Evolutionary Thought, Princeton, NJ: Princeton University Press. (Scholar)
Wilson Edmund B., 1898, “Cell Lineage and Ancestral Reminiscence”, in Biological Lectures from the Marine Biological Laboratories, Woods Hole, Massachusetts, Boston: Ginn, 21–42. (Scholar)
Wilson, E. O., 1975 [2000], Sociobiology: The New Synthesis, Cambridge, MA: Belknap Press, new edition 2000. (Scholar)
Winther, Rasmus Grønfeldt, 2015, “Evo-Devo as a Trading Zone”, in Conceptual Change in Biology: Scientific and Philosophical Perspectives on Evolution and Development, Alan Love (ed.), Berlin: Springer, 459–482. (Scholar)
Wolpert, Lewis, 1994, “Do We Understand Development?”, Science, 266(5185): 571–572. doi:10.1126/science.7939707 (Scholar)
Woltereck, R., 1909, “Weitere experimentelle Untersuchungen über Artveränderung, speziell über das Wesen quantitativer Artunderscheide bei Daphniden”, Verhandlungen Der Deutschen Zoologischen Gesellschaft, 1909: 110–172. (Scholar)
Wray, Gregory A., Hopi E. Hoekstra, Douglas J. Futuyma, Richard E. Lenski, Trudy F. C. Mackay, Dolph Schluter, and Joan E. Strassmann, 2014, “Does Evolutionary Theory Need a Rethink? No, All Is Well”, Nature News, 514(7521): 161–164. doi:10.1038/514161a (Scholar)
Ylikoski, Petri, 2013, “Causal and Constitutive Explanation Compared”, Erkenntnis, 78(S2): 277–297. doi:10.1007/s10670-013-9513-9 (Scholar)
Zhang, Bo, Sean P. Leonard, Yiyuan Li, and Nancy A. Moran, 2019, “Obligate Bacterial Endosymbionts Limit Thermal Tolerance of Insect Host Species”, Proceedings of the National Academy of Sciences, 116(49): 24712–24718. doi:10.1073/pnas.1915307116 (Scholar)
Zilber-Rosenberg, Ilana and Eugene Rosenberg, 2008, “Role of Microorganisms in the Evolution of Animals and Plants: The Hologenome Theory of Evolution”, FEMS Microbiology Reviews, 32(5): 723–735. doi:10.1111/j.1574-6976.2008.00123.x (Scholar)
Zuk, Marlene, Francisco Garcia-Gonzalez, Marie Elisabeth Herberstein, and Leigh W. Simmons, 2014, “Model Systems, Taxonomic Bias, and Sexual Selection: Beyond Drosophila”, Annual Review of Entomology, 59: 321–338. doi:10.1146/annurev-ento-011613-162014 (Scholar)

Applied ethics	Epistemology	History of Western Philosophy	Meta-ethics	Metaphysics	Normative ethics
Philosophy of biology	Philosophy of language	Philosophy of mind	Philosophy of religion	Science Logic and Mathematics	More ...