Linked bibliography for the SEP article "Molecular Biology" by Tudor Baetu, Monika Piotrowska and James Tabery

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Abir-Am, Pnina, 1985, “Themes, Genres and Orders of Legitimation in the Consolidation of New Scientific Disciplines: Deconstructing the Historiography of Molecular Biology”, History of Science, 23: 74–117. (Scholar)
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–––, 1994, “Converging Failure: Science Policy, Historiography and Social Theory of Early Molecular Biology”, in Tamara Horowitz and Allen I. Janis (eds.), Scientific Failure, New York: Roman and Littlefield Publishers, Inc., 141–166. (Scholar)
–––, 2006, “Molecular Biology and Its Recent Historiography: A Transnational Quest for the ‘Big Picture’”, History of Science, 44: 95–118. (Scholar)
Alberts, Bruce, Dennis Bray, Julian Lewis, Martin Raff, Keith Roberts and James D. Watson, 1983, Molecular Biology of the Cell, New York: Garland. (Scholar)
Alberts, Bruce, Alexander Johnson, Julian Lewis, Martin Raff, Keith Roberts, and Peter Walter, 2002, Molecular Biology of the Cell, fourth edition, New York: Garland. (Scholar)
Alberts, Bruce, Rebecca Heald, Alexander Johnson, David Morgan, Martin Raff, Keith Roberts, and Peter Walter, 2022. Molecular Biology of the Cell, seventh edition, New York: Norton. (Scholar)
Andersen, Holly, 2012, “The Case for Regularity in Mechanistic Causal Explanation”, Synthese, 189: 415–32. (Scholar)
Ankeny, Rachel A., 2000, “Fashioning Descriptive Models in Biology: Of Worms and Wiring Diagrams”, Philosophy of Science (Proceedings of the 1998 Biennial Meetings of the Philosophy of Science Association), 67(supplement): S260–S272. (Scholar)
–––, 2001, “Model Organisms as Models: Understanding the ‘Lingua Franca’ of the Human Genome Project”, Philosophy of Science (Proceedings of the 2000 Biennial Meeting of the Philosophy of Science Association), 68(3, supplement): S251–S261. (Scholar)
–––, 2003, “Sequencing the Genome from Nematode to Human: Changing Methods, Changing Science”, Endeavour, 27: 87–92. (Scholar)
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Baedke, Jan, 2018, Above the Gene, Beyond Biology: Toward a Philosophy of Epigenetics. Pittsburgh, PH: University of Pittsburgh Press. (Scholar)
Baetu, Tudor M., 2016, “The ‘Big Picture’: The Problem of Extrapolation in Basic Research”, The British Journal for the Philosophy of Science, 67: 941–964. (Scholar)
–––, 2017, “Mechanisms in Molecular Biology”, in Glennan and Illari (eds.), The Routledge Handbook of Mechanisms and Mechanistic Philosophy, London, UK: Routledge, 308–318. (Scholar)
–––, 2019, Mechanisms in Molecular Biology, Cambridge: Cambridge University Press. (Scholar)
Banani, Salman F., Hyun O. Lee, Anthony A. Hyman, and Michael K. Rosen, 2017, “Biomolecular Condensates: Organizers of Cellular Biochemistry”, Nature Reviews Molecular Cell Biology, 18: 285–98. (Scholar)
Bapteste, Eric and John Dupre, 2013, “Towards a processual microbial ontology”, Biology and Philosophy, 28: 379–404. (Scholar)
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Barwich, Ann-Sophie and Karim Baschir, 2017, “The Manipulability of What? The History of G–Protein Coupled Receptors”, Biology and Philosophy 32: 1317–1339 (Scholar)
Beatty, John, 1995, “The Evolutionary Contingency Thesis”, in Lennox and Wolters 1995: 45–81. (Scholar)
Bechtel, William, 2006, Discovering Cell Mechanisms: The Creation of Modern Cell Biology, New York: Cambridge University Press. (Scholar)
–––, 2011, “Mechanism and Biological Explanation”, Philosophy of Science, 78: 533–557. (Scholar)
–––, 2020, “Hierarchy and Levels: Analysing Networks to Study Mechanisms in Molecular Biology”, Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1796): 20190320. (Scholar)
Bechtel, William and Robert C. Richardson, 1993, Discovering Complexity: Decomposition and Localization as Strategies in Scientific Research, Princeton, NJ: Princeton University Press. (2nd edition, 2010, Cambridge, MA: MIT Press.) (Scholar)
Bechtel, William and Adele Abrahamsen, 2005, “Explanation: A Mechanistic Alternative”, Studies in the History and Philosophy of Biology and the Biomedical Sciences, 36: 421–441. (Scholar)
–––, 2010, “Dynamic Mechanistic Explanation: Computational Modeling of Circadian Rhythms as an Exemplar for Cognitive Science”, Studies in History and Philosophy of Science Part A, 41: 321–333. (Scholar)
–––, 2013, “Thinking Dynamically about Biological Mechanisms: Networks of Coupled Oscillators”, Foundations of Science, 18: 707–723. (Scholar)
Bechtel, William and Andrew Bollhagen, 2021, “Active Biological Mechanisms: Transforming Energy into Motion in Molecular Motors”, Synthese, 199(5–6): 12705–12729. (Scholar)
Bellazzi, Francesca, 2022, “The emergence of the postgenomic gene”, European Journal for Philosophy of Science, 12(1): 1–21. (Scholar)
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Berget, Susan, Claire Moore, and Philip Sharp, 1977, “Spliced Segments at the 5’ Terminus of Adenovirus 2 Late mRNA”, Proceedings of the National Academy of Sciences (USA), 74: 3171–3175. (Scholar)
Berk, Arnold and Philip Sharp, 1978, “Structure of the Adenovirus 2 Early mRNAs”, Cell, 14: 695–711. (Scholar)
Bickhard, Mark H., 2011, “Systems and Process Metaphysics”, in Cliff Hooker (ed.), Handbook of Philosophy of Science. Philosophy of Complex Systems, Vol. 10, Amsterdam: Elsevier, 91–104. (Scholar)
Bickle, John W., 1998, Psychoneural Reduction: The New Wave, Cambridge, MA: MIT Press. (Scholar)
Boem, Federico, Emanuele Ratti, Mattia Andreoletti, and Giovanni Boniolo, 2016, “Why genes are like lemons”, Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, 57: 88–95. (Scholar)
Bogen, James, 2005, “Regularities and Causality; Generalizations and Causal Explanations”, Studies in History and Philosophy of Biological and Biomedical Sciences, 36: 397–420. (Scholar)
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Bolinska, Agnes, 2022, “A Monist Proposal: Against Integrative Pluralism About Protein Structure”, Erkenntnis, first online 11 August 2022. doi:10.1007/s10670-022-00601-2 (Scholar)
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–––, 2009, “Exemplary and Surrogate Models: Two Modes of Representation in Biology”, Perspectives in Biology and Medicine, 52(4): 485–499. (Scholar)
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Boniolo, Giovanni and Raffaella Campaner, 2018, “Molecular pathways and the contextual explanation of molecular functions”, Biology and Philosophy, 33: 24. (Scholar)
Boogerd, Fred C., Frank J. Bruggeman, Jan-Hendrik S Hofmeyr. and Hans V. Westerhoff 2007), “Afterthoughts as Foundations for Systems Biology”, in Fred Boogerd, Frank Bruggeman, Jan-Hendrik Hofmeyr and Hans Westerhoff (eds.), Systems Biology: Philosophical Foundations, New York: Elsevier, 321–336. (Scholar)
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–––, 1973, “The Genetics of Behavior”, British Medical Bulletin, 29: 269–271. (Scholar)
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–––, 2018, “Explanation of Molecular Processes without Tracking Mechanism Operation”, Philosophy of Science 85: 984–997. (Scholar)
Brigandt, Ingo, Sara Green and Maureen O’Malley, 2017, “Systems Biology and Mechanistc Explanation”, in Glennan and Illari (eds.), The Routledge Handbook of Mechanisms and Mechanistic Philosophy, London, UK: Routledge, 362–374., (Scholar)
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Brown, Andrew, 2003, In the Beginning Was the Worm: Finding the Secrets of Life in a Tiny Hermaphrodite, New York: Columbia University Press. (Scholar)
Burian, Richard M., 1993a, “Technique, Task Definition, and the Transition from Genetics to Molecular Genetics: Aspects of the Work on Protein Synthesis in the Laboratories of J. Monod and P. Zamecnik”, Journal of the History of Biology, 26: 387–407. (Note: This issue has a Special Section: Building Molecular Biology.) (Scholar)
–––, 1993b, “How the Choice of Experimental Organism Matters: Epistemological Reflections on an Aspect of Biological Practice”, Journal of the History of Biology, 26: 351–367. (Scholar)
Cairns, John, Gunther S. Stent; and James D. Watson (eds.), 1966, Phage and the Origins of Molecular Biology, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press. (Scholar)
Calcott, Brett, 2009, “Lineage Explanations: Explaining How Biological Mechanisms Change”, British Journal for the Philosophy of Science, 60: 51–78. (Scholar)
Campbell, Richard, 2015,The Metaphysics of Emergence, London: Palgrave Macmillan. (Scholar)
Canguilhem, Georges, 1989, The Normal and the Pathological, translated by Carolyn R. Fawcett. New York: Zone Books. (Scholar)
Cantor, Charles R. and Cassandra M. Smith, 1999, Genomics, New York: John Wiley and Sons. (Scholar)
Carlson, Elof A., 1966, The Gene: A Critical History, Philadelphia: Saunders. (Scholar)
–––, 1971, “An Unacknowledged Founding of Molecular Biology: H.J. Muller’s Contribution to Gene Theory, 1910–1936”, Journal of the History of Biology, 4: 149–170. (Scholar)
–––, 1981, Genes, Radiation and Society: The Life and Work of H.J. Muller, Ithaca, New York: Cornell University Press. (Scholar)
–––, 2011, Mutation: The History of an Idea from Darwin to Genomics. New York: Cold Spring Harbor Press. (Scholar)
Chow, Louise, Richard Gelinas, Thomas Broker, and Richard Roberts, 1977, “An Amazing Sequence Arrangement at the 5′ Ends of Adenovirus 2Messenger RNA”, Cell, 12: 1–18. (Scholar)
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Cohen, S., 1984, “The Biochemical Origins of Molecular Biology”, Trends in Biochemical Sciences, 9: 334–336. (Scholar)
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Craver, Carl F., 2001, “Structures of Scientific Theories”, in P.K. Machamer and M. Silberstein (eds.), Blackwell Guide to the Philosophy of Science, Oxford: Blackwell, 55–79. (Scholar)
–––, 2007, Explaining the Brain, Oxford: Oxford University Press. (Scholar)
Craver, Carl F. and Lindley Darden, 2013, In Search of Mechanisms: Discoveries across the Life Sciences, Chicago, IL: University of Chicago Press. (Scholar)
Craver, Carl F. and Mark Povich, 2017, “Levels, Reduction, and Emergence”, in S. Gennan and P. Illari (eds.), Routledge Handbook of Mechanisms, London: Routledge, 185–197. (Scholar)
Craver, Carl F., Stuart Glennan and Mark Povich, 2021, “Constitutive Relevance & Mutual Manipulability Revisited”, Synthese, 199: 8807–8828. (Scholar)
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–––, 1970, “Central Dogma of Molecular Biology”, Nature, 227: 561–563. (Scholar)
–––, 1988, What Mad Pursuit: A Personal View of Scientific Discovery, New York: Basic Books. (Scholar)
–––, 1996, “The Impact of Linus Pauling on Molecular Biology”, in Ramesh S. Krishnamurthy (ed.), The Pauling Symposium: A Discourse on the Art of Biography, Corvallis, Oregon: Oregon State University Libraries Special Collections, 1–18. (Scholar)
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Culp, Sylvia and Philip Kitcher, 1989, “Theory Structure and Theory Change in Contemporary Molecular Biology”, The British Journal for the Philosophy of Science, 40: 459–483. (Scholar)
Darden, Lindley, 1991, Theory Change in Science: Strategies from Mendelian Genetics, New York: Oxford University Press. (Scholar)
–––, 1995, “Exemplars, Abstractions, and Anomalies: Representations and Theory Change in Mendelian and Molecular Genetics”, in Lennox and Wolters 1995: 137–158. (Scholar)
–––, 2002, “Strategies for Discovering Mechanisms: Schema Instantiation, Modular Subassembly, Forward/Backward Chaining”, Philosophy of Science, 69 (Supplement): S354–S365. (Scholar)
–––, 2005, “Relations Among Fields: Mendelian, Cytological and Molecular Mechanisms”, Studies in History and Philosophy of Biological and Biomedical Sciences, 36: 349–371. (Scholar)
–––, 2006a, Reasoning in Biological Discoveries: Essays on Mechanisms, Interfield Relations, and Anomaly Resolution, Cambridge, UK: Cambridge University Press. (Scholar)
–––, 2006b, “Flow of Information in Molecular Biological Mechanisms”, Biological Theory, 1: 280–287. (Scholar)
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–––, 2008, “Thinking Again about Biological Mechanisms”, Philosophy of Science, 75: 958–69. (Scholar)
Darden, Lindley and Carl F. Craver, 2002, “Strategies in the Interfield Discovery of the Mechanism of Protein Synthesis”, Studies in History and Philosophy of Biological and Biomedical Sciences, 33: 1–28. (Scholar)
Darden, Lindley and Nancy Maull, 1977, “Interfield Theories”, Philosophy of Science, 44: 43–64. (Scholar)
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