Complete chemical synthesis, assembly, and cloning of a mycoplasma genitalium genome

Science 319 (5867):1215--1220 (2008)

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Abstract
We have synthesized a 582,970-base pair Mycoplasma genitalium genome. This synthetic genome, named M. genitalium JCVI-1.0, contains all the genes of wild-type M. genitalium G37 except MG408, which was disrupted by an antibiotic marker to block pathogenicity and to allow for selection. To identify the genome as synthetic, we inserted "watermarks" at intergenic sites known to tolerate transposon insertions. Overlapping "cassettes" of 5 to 7 kilobases (kb), assembled from chemically synthesized oligonucleotides, were joined by in vitro recombination to produce intermediate assemblies of approximately 24 kb, 72 kb ("1/8 genome"), and 144 kb ("1/4 genome"), which were all cloned as bacterial artificial chromosomes in Escherichia coli. Most of these intermediate clones were sequenced, and clones of all four 1/4 genomes with the correct sequence were identified. The complete synthetic genome was assembled by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae, then isolated and sequenced. A clone with the correct sequence was identified. The methods described here will be generally useful for constructing large DNA molecules from chemically synthesized pieces and also from combinations of natural and synthetic DNA segments. 10.1126/science.1151721.
Keywords synthetic_biology   synthetic_dna
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Synthetic Biology and the Ethics of Knowledge.T. Douglas & J. Savulescu - 2010 - Journal of Medical Ethics 36 (11):687-693.
Synthetic Biology Needs A Synthetic Bioethics.Paul B. Thompson - 2012 - Ethics, Policy and Environment 15 (1):1 - 20.
The Good of Non-Sentient Entities: Organisms, Artifacts, and Synthetic Biology.John Basl & Ronald Sandler - 2013 - Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 44 (4):697-705.
Synthetic Biology and Synthetic Knowledge.Christophe Malaterre - 2013 - Biological Theory (8):346–356.
Kuhn, Nominalism, and Empiricism.Alexander Bird - 2003 - Philosophy of Science 70 (4):690-719.

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