Results for 'Cecilia Arighi'

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  1. TGF-beta signaling proteins and the Protein Ontology.Arighi Cecilia, Liu Hongfang, Natale Darren, Barker Winona, Drabkin Harold, Blake Judith, Barry Smith & Wu Cathy - 2009 - BMC Bioinformatics 10 (Suppl 5):S3.
    The Protein Ontology (PRO) is designed as a formal and principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from a classification of proteins on the basis of evolutionary relationships at the homeomorphic level to the representation of the multiple protein forms of a gene, including those resulting from alternative splicing, cleavage and/or posttranslational modifications. Focusing specifically on the TGF-beta signaling proteins, we describe the building, curation, usage and dissemination of PRO. PRO provides a framework (...)
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  2. Toll-like receptor signaling in vertebrates: Testing the integration of protein, complex, and pathway data in the Protein Ontology framework.Cecilia Arighi, Veronica Shamovsky, Anna Maria Masci, Alan Ruttenberg, Barry Smith, Darren Natale, Cathy Wu & Peter D’Eustachio - 2015 - PLoS ONE 10 (4):e0122978.
    The Protein Ontology provides terms for and supports annotation of species-specific protein complexes in an ontology framework that relates them both to their components and to species-independent families of complexes. Comprehensive curation of experimentally known forms and annotations thereof is expected to expose discrepancies, differences, and gaps in our knowledge. We have annotated the early events of innate immune signaling mediated by Toll-Like Receptor 3 and 4 complexes in human, mouse, and chicken. The resulting ontology and annotation data set has (...)
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  3. Protein-centric connection of biomedical knowledge: Protein Ontology research and annotation tools.Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei Evsikov, Hongzhan Huang, Barry Smith & Others - 2011 - In Proceedings of the 2nd International Conference on Biomedical Ontology. Buffalo, NY: NCOR. pp. 285-287.
    The Protein Ontology (PRO) web resource provides an integrative framework for protein-centric exploration and enables specific and precise annotation of proteins and protein complexes based on PRO. Functionalities include: browsing, searching and retrieving, terms, displaying selected terms in OBO or OWL format, and supporting URIs. In addition, the PRO website offers multiple ways for the user to request, submit, or modify terms and/or annotation. We will demonstrate the use of these tools for protein research and annotation.
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  4. Framework for a protein ontology.Darren A. Natale, Cecilia N. Arighi, Winona Barker, Judith Blake, Ti-Cheng Chang, Zhangzhi Hu, Hongfang Liu, Barry Smith & Cathy H. Wu - 2007 - BMC Bioinformatics 8 (Suppl 9):S1.
    Biomedical ontologies are emerging as critical tools in genomic and proteomic research where complex data in disparate resources need to be integrated. A number of ontologies exist that describe the properties that can be attributed to proteins; for example, protein functions are described by Gene Ontology, while human diseases are described by Disease Ontology. There is, however, a gap in the current set of ontologies—one that describes the protein entities themselves and their relationships. We have designed a PRotein Ontology (PRO) (...)
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  5. An improved ontological representation of dendritic cells as a paradigm for all cell types.Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Liebermann, Chris Mungall, Richard H. Scheuermann, Barry Smith & Lindsay Cowell - 2009 - BMC Bioinformatics 10 (1):70.
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  6. An improved ontological representation of dendritic cells as a paradigm for all cell types.Masci Anna Maria, N. Arighi Cecilia, D. Diehl Alexander, E. Lieberman Anne, Mungall Chris, H. Scheuermann Richard, Barry Smith & G. Cowell Lindsay - 2009 - BMC Bioinformatics 10 (1):70.
    The Cell Ontology (CL) is designed to provide a standardized representation of cell types for data annotation. Currently, the CL employs multiple is_a relations, defining cell types in terms of histological, functional, and lineage properties, and the majority of definitions are written with sufficient generality to hold across multiple species. This approach limits the CL’s utility for cross-species data integration. To address this problem, we developed a method for the ontological representation of cells and applied this method to develop a (...)
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  7. The Protein Ontology: A structured representation of protein forms and complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...)
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  8. Protein Ontology: A controlled structured network of protein entities.A. Natale Darren, N. Arighi Cecilia, A. Blake Judith, J. Bult Carol, R. Christie Karen, Cowart Julie, D’Eustachio Peter, D. Diehl Alexander, J. Drabkin Harold, Helfer Olivia, Barry Smith & Others - 2013 - Nucleic Acids Research 42 (1):D415-21..
    The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to (...)
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  9. Protein Ontology: Enhancing and scaling up the representation of protein entities.Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Jonathan Bona, Chuming Chen, Sheng-Chih Chen, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, William D. Duncan, Hongzhan Huang, Jia Ren, Karen Ross & Alan Ruttenberg - 2017 - Nucleic Acids Research 45 (D1):D339-D346.
    The Protein Ontology (PRO; http://purl.obolibrary.org/obo/pr) formally defines and describes taxon-specific and taxon-neutral protein-related entities in three major areas: proteins related by evolution; proteins produced from a given gene; and protein-containing complexes. PRO thus serves as a tool for referencing protein entities at any level of specificity. To enhance this ability, and to facilitate the comparison of such entities described in different resources, we developed a standardized representation of proteoforms using UniProtKB as a sequence reference and PSI-MOD as a post-translational modification (...)
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  10. The representation of protein complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.
    Representing species-specific proteins and protein complexes in ontologies that are both human and machine-readable facilitates the retrieval, analysis, and interpretation of genome-scale data sets. Although existing protin-centric informatics resources provide the biomedical research community with well-curated compendia of protein sequence and structure, these resources lack formal ontological representations of the relationships among the proteins themselves. The Protein Ontology (PRO) Consortium is filling this informatics resource gap by developing ontological representations and relationships among proteins and their variants and modified forms. Because (...)
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  11. Framework for a protein ontology.Darren Natale, Arighi A., N. Cecilia, Winona Barker, Blake C., Chang Judith, Hu Ti-Cheng, Liu Zhangzhi, Smith Hongfang, Wu Barry & H. Cathy - 2007 - BMC Bioinformatics 8 (Suppl 9):S1.
     
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  12. Protein Ontology: A controlled structured network of protein entities.Natale Darren, A. Arighi, N. Cecilia, Blake Judith, A. Bult, J. Carol, Christie Karen, R. Cowart, Julie D’Eustachio, Peter Diehl, D. Alexander, Drabkin Harold, J. Helfer & Olivia Others - 2013 - Nucleic Acids Research:gkt1173.
     
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  13. The Protein Ontology: A structured representation of protein forms and complexes.Natale Darren, A. Arighi, N. Cecilia, Barker Winona, C. Blake, A. Judith, Bult Carol, J. Caudy, Michael Drabkin, J. Harold, D’Eustachio Peter, Evsikov Alexei, V. Huang & Hongzhan Others - 2011 - Nucleic Acids Research 39 (suppl 1):D539--D545.
     
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  14.  16
    Primary-secondary control and coping: a cross-cultural comparison.Cecilia Essau - 1992 - Regensburg: S. Roderer Verlag.
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  15.  42
    Framed Before We Know It: How Gender Shapes Social Relations.Cecilia L. Ridgeway - 2009 - Gender and Society 23 (2):145-160.
    In this article, I argue that gender is a primary cultural frame for coordinating behavior and organizing social relations. I describe the implications for understanding how gender shapes social behavior and organizational structures. By my analysis, gender typically acts as a background identity that biases, in gendered directions, the performance of behaviors undertaken in the name of organizational roles and identities. I develop an account of how the background effects of the gender frame on behavior vary by the context that (...)
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  16. Beast machines? Questions of animal consciousness.Cecilia Heyes - 2008 - In Lawrence Weiskrantz & Martin Davies (eds.), Frontiers of consciousness. New York: Oxford University Press.
     
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  17.  7
    El lugar de la cirugía en la filosofía de la medicina.Cecilia M. Calderón Aguilar - 2023 - Euphyía - Revista de Filosofía 17 (32):122-149.
    Si bien la cirugía es parte fundamental de la medicina y de gran relevancia en la sociedad actual, no ha sido tomada en cuenta por la filosofía de la medicina. Debido a la naturaleza eminentemente práctica de la cirugía, una indagación sistemática nos permitirá, entre otros aspectos, dilucidar rasgos generales de las prácticas científicas en las que el conocimiento tácito es esencial. Por lo que, con la finalidad de integrar a la cirugía dentro del marco general de la filosofía de (...)
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    Homenaje a Cecilia Braslavsky: conocimiento, historia y política en la educación.Cecilia Braslavsky, Inés Dussel, Pablo Pineau & Marcelo Caruso (eds.) - 2016 - Ciudad Autónoma de Buenos Aires, Argentina: Santillana.
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  19.  11
    Cartesian Environmental Ethics.Cecilia Wee - 2001 - Environmental Ethics 23 (3):275-286.
    René Descartes is often thought to have exerted a pernicious influence on our views concerning the relationship of humans to the environment. The view that because animals are machines, “thoughtless brutes,” they have no moral standing, and we thus have a right to use them to further our own interests, is attributed to him. A celebrated passage from the Discourse on Method adds fuel to the view that he subscribes to the “dominion” theory. I argue that this picture is misleading (...)
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  20. With Commentary.Cecilia Heyes - 1988 - Biology and Philosophy 3 (2):194.
     
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  21.  18
    Newman and the Proof of the External World in Descartes's Meditations.Cecilia Wee - 2001 - British Journal for the History of Philosophy 9 (1):123-130.
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  22. Where do mirror neurons come from.Cecilia Heyes - forthcoming - Neuroscience and Biobehavioral Reviews.
    1. Properties of mirror neurons in monkeys. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . (...)
     
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  23.  28
    Ambulance nurses’ experiences of patient relationships in urgent and emergency situations: A qualitative exploration.Cecilia Svensson, Anders Bremer & Mats Holmberg - 2019 - Clinical Ethics 14 (2):70-79.
    Background The ambulance service provides emergency care to meet the patient’s medical and nursing needs. Based on professional nursing values, this should be done within a caring relationship with a holistic approach as the opposite would risk suffering related to disengagement from the patient’s emotional and existential needs. However, knowledge is sparse on how ambulance personnel can meet caring needs and avoid suffering, particularly in conjunction with urgent and emergency situations. Aim The aim of the study was to explore ambulance (...)
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  24.  16
    Am I Really Bipolar? Personal Accounts of the Experience of Being Diagnosed With Bipolar II Disorder.Cecilia Johansson & Andrzej Werbart - 2020 - Frontiers in Psychology 11.
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  25.  24
    Optimism and Hope in Chronic Disease: A Systematic Review.Cecilia C. Schiavon, Eduarda Marchetti, Léia G. Gurgel, Fernanda M. Busnello & Caroline T. Reppold - 2017 - Frontiers in Psychology 7.
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  26. El tránsito teórico de la izquierda intelectual en el Cono Sur de Ámerica latina.Cecilia Lesgart - 2000 - Revista Internacional de Filosofía Política 16:19-41.
     
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  27. A Lemery Archaeological Sequence.Cecilia Y. Locsin, Maria Isabel G. Ongpin & Socorro Paz P. Paterno - 2013 - Philosophy East and West 63 (2).
     
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  28.  98
    Précis of Cognitive Gadgets: The Cultural Evolution of Thinking.Cecilia Heyes - 2018 - Behavioral and Brain Sciences 42:1-57.
    Cognitive gadgets are distinctively human cognitive mechanisms – such as imitation, mind reading, and language – that have been shaped by cultural rather than genetic evolution. New gadgets emerge, not by genetic mutation, but by innovations in cognitive development; they are specialised cognitive mechanisms built by general cognitive mechanisms using information from the sociocultural environment. Innovations are passed on to subsequent generations, not by DNA replication, but through social learning: People with new cognitive mechanisms pass them on to others through (...)
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  29. L'antefatto.Cecilia Tasca, Titoli E. la SeriePrivilegi, Storico Del Comune Di Dell’Archivio & Bosa Nuovi Documenti - forthcoming - ACME: Annali della Facoltà di lettere e filosofia dell'Università degli studi di Milano.
     
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  30.  20
    Beauty That Moves: Dance for Parkinson’s Effects on Affect, Self-Efficacy, Gait Symmetry, and Dual Task Performance.Cecilia Fontanesi & Joseph F. X. DeSouza - 2021 - Frontiers in Psychology 11.
    Background: Previous studies have investigated the effects of dance interventions on Parkinson’s motor and non-motor symptoms in an effort to develop an integrated view of dance as a therapeutic intervention. This within-subject study questions whether dance can be simply considered a form of exercise by comparing a Dance for Parkinson’s class with a matched-intensity exercise session lacking dance elements like music, metaphorical language, and social reality of art-partaking.Methods: In this repeated-measure design, 7 adults with Parkinson’s were tested four times; before (...)
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  31.  8
    Capitalismo publicitário: uma análise crítica dos cartões promocionais de LEMCO do início do século XX.Cecilia Molinari de Rennie - 2020 - Bakhtiniana 15 (4):172-192.
    RESUMO Neste artigo, analiso um conjunto de seis cartões comerciais pertencentes a uma duradoura campanha de marketing da Liebig Extract of Meat Co. A análise crítica dos textos promocionais produzidos na virada do século XX oferece insights significativos sobre os mecanismos discursivos que contribuíram para a hegemonização do capitalismo burguês. Diferentemente de outras formas de publicidade, os cartões comerciais não são rapidamente descartados e esquecidos; pelo contrário, eles podem se distanciar dos produtos anunciados para se tornar parte dos discursos populares (...)
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  32. Reflections on self-recognition in primates.Cecilia M. Heyes - 1994 - Animal Behaviour 47:909-19.
     
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  33.  19
    La libertad.Cecilia Abdo Ferez - 2023 - Los Polvorines, Provincia de Buenos Aires, Argentina: Ediciones UNGS, Universidad Nacional de General Sarmiento.
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  34.  10
    Portrait of Gunnar Källén: A Physics Shooting Star and Poet of Early Quantum Field Theory.Cecilia Jarlskog (ed.) - 2014 - Cham: Imprint: Springer.
    Wolfgang Pauli referred to him as 'my discovery,' Robert Oppenheimer described him as 'one of the most gifted theorists' and Niels Bohr found him enormously stimulating. Who was the man in question, Gunnar Källén (1926-1968)? His appearance in the physics sky was like a shooting star. His contributions to the scientific debate caused excitement among young and old. Similar to his friend and mentor, Wolfgang Pauli, he demanded honesty and rigor in physics - a distinct dividing line between fact and (...)
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  35.  16
    Imitation and culture: What gives?Cecilia Heyes - 2021 - Mind and Language 38 (1):42-63.
    What is the relationship between imitation and culture? This article charts how definitions of imitation have changed in the last century, distinguishes three senses of “culture” used by contemporary evolutionists (Culture1–Culture3), and summarises current disagreement about the relationship between imitation and culture. The disagreement arises from ambiguities in the distinction between imitation and emulation, and confusion between two explanatory projects—the anthropocentric project and the cultural selection project. I argue that imitation gives cultural evolution an inheritance mechanism for communicative and gestural (...)
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  36. Perception of Nigerian Dùndún Talking Drum Performances as Speech-Like vs. Music-Like: The Role of Familiarity and Acoustic Cues.Cecilia Durojaye, Lauren Fink, Tina Roeske, Melanie Wald-Fuhrmann & Pauline Larrouy-Maestri - 2021 - Frontiers in Psychology 12.
    It seems trivial to identify sound sequences as music or speech, particularly when the sequences come from different sound sources, such as an orchestra and a human voice. Can we also easily distinguish these categories when the sequence comes from the same sound source? On the basis of which acoustic features? We investigated these questions by examining listeners’ classification of sound sequences performed by an instrument intertwining both speech and music: the dùndún talking drum. The dùndún is commonly used in (...)
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  37.  37
    Policy on Synthetic Biology: Deliberation, Probability, and the Precautionary Paradox.Christopher Wareham & Cecilia Nardini - 2013 - Bioethics 29 (2):118-125.
    Synthetic biology is a cutting-edge area of research that holds the promise of unprecedented health benefits. However, in tandem with these large prospective benefits, synthetic biology projects entail a risk of catastrophic consequences whose severity may exceed that of most ordinary human undertakings. This is due to the peculiar nature of synthetic biology as a ‘threshold technology’ which opens doors to opportunities and applications that are essentially unpredictable. Fears about these potentially unstoppable consequences have led to declarations from civil society (...)
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  38.  7
    Contingency and Units in Interaction.Cecilia E. Ford - 2004 - Discourse Studies 6 (1):27-52.
    Starting with Houtkoop and Mazeland’s study of discourse units, and touching upon recent studies aimed at detailing unit projection in interaction, this article argues that the drive toward abstract and discrete models for units and unit projection is potentially misleading. While it has been established that to engage in talk-in-interaction, as it unfolds in real time, participants rely on projectable units, research aimed at defining units unintentionally backgrounds the contingency inherent in interaction. A central function of language for collaborative action (...)
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  39.  8
    La modernidad y sus otros en América Latina: voces y silencios de la Malinche y Sor Juana Inés de la Cruz.G. María Cecilia Sánchez - 2023 - Revista de filosofía (Chile) 80:233-250.
    El artículo se pregunta por el problema del Otro en América Latina, considerando la reflexión de Lévinas y de Ortega y Gasset a partir de la fenomenología de Husserl. El examen recae en dos figuras paradigmáticas de la modernidad barroca: la así denominada Malinche y Juana Inés de la Cruz, teniendo como telón de fondo el debate entre Ginés de Sepúlveda y Bartolomé de las Casas acerca de la humanidad o animalidad de los así llamados indígenas. Se le presta especial (...)
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  40. Contrasting approaches to the legitimation of intentional language within comparative psychology.Cecilia M. Heyes - 1987 - Behaviorism 15 (1):41-50.
    Dennett, a philosopher, and Griffin, an ethologist, have recently presented influential arguments promoting the extended use of intentional language by students of animal behavior. This essay seeks to elucidate and to contrast the claims made by each of these authors, and to evaluate their proposals primarily from the perspective of a practicing comparative psychologist or ethologist. While Griffin regards intentional terms as explanatory, Dennett assigns them a descriptive function; the issue of animal consciousness is central to Griffin's program and only (...)
     
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  41.  46
    Speculative Before the Turn: Reintroducing Feminist Materialist Performativity.Cecilia Åsberg, Kathrin Thiele & Iris van der Tuin - unknown
    Before the trains of thought have been firmly laid down, we ask in this article about the very nature and histories of the speculative of the speculative-materialist turn. We do this from the intertwined interfaces of curious feminist materialisms, foregrounding sexual difference, post-positivist critique and posthumanist performativity such as is being done in various strands of feminist theory today. The question of speculation plays a constitutive role in feminist critique and in several new or neo-materialist traditions. In fact, many interesting (...)
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  42. The intentionality of animal action.Cecilia Heyes & Anthony Dickinson - 1990 - Mind and Language 5 (1):87–103.
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  43.  33
    Procedures for clinical ethics case reflections: an example from childhood cancer care.Cecilia Bartholdson, Pernilla Pergert & Gert Helgesson - 2014 - Clinical Ethics 9 (2-3):87-95.
    The procedures for structuring clinical ethics case reflections in a childhood cancer care setting are presented, including an eight-step model. Four notable characteristics of the procedures are: members of the inter-professional health care team, not external experts, taking a leading role in the reflections; patients or relatives not being directly involved; the model explicitly addressing values and moral principles instead of focussing exclusively on the interests of involved parties; using a case-based rather than principle-based method. By discusing the advantages and (...)
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  44.  47
    Anti-humanism or autonomy of the individual vis-a-vis social structures: The individual-society relationship in Niklas Luhmann's theory.Cecilia Dockendorff - 2013 - Cinta de Moebio 48:158-173.
    The individual-society relationship remains a central issue in the social sciences which has not yet reached a consensual explanation. This article presents the way in which Niklas Luhmann’s theory of social systems deals with the subject. I discuss some of the critical approaches this theory has arises. Then I present social system’s concepts and partial theories that describe the individual-society relationship. I conclude with some reflections about what we consider to be "theoretical advantages" regarding Luhmann’s theory vis-a-vis common explanations in (...)
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    Veinticinco años en pos de un nuevo paradigma social: lecciones aprendidas.Cecilia Dockendorff - 2012 - Polis: Revista Latinoamericana 33.
    Este artículo retoma una reflexión de más de dos décadas en torno al concepto de paradigma sociocultural y a un modelo que da cuenta de su surgimiento, evolución y cambio. En diálogo con la convocatoria de Polis al presente número de la revista, ofrecemos una discusión a partir de los conocimientos adquiridos en una línea epistemológica que integra la biología del conocer, la sociología del conocimiento y la teoría de sistemas sociales de Luhmann. Sostenemos que la distinción entre paradigma sociocultural (...)
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  46. The complex hydrological signature of the Little Ice Age from the Puna to the Pampa reconstructed from lake records.Cecilia Laprida - forthcoming - Laguna.
     
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  47.  8
    Conversatorio a propósito del libro "Que digan dónde están" Una historia de los derechos humanos en Argentina, de Luciano Alonso (Prometeo,2022).Cecilia Vázquez Lareu - 2022 - Aletheia: Anuario de Filosofía 13 (25):e151.
    Revisión de Actividad Que digan dónde están" Una historia de los derechos humanos en Argentina por L. Alonso.
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  48.  24
    La Polyphonie des Temps chez Vintila Horia.Cecilia Popescu Latiş - 2008 - Proceedings of the Xxii World Congress of Philosophy 26:93-101.
    La communication se rapporte à la richesse des interprétations temporelles par l’intermédiaire de Vintila Horia, l’une des personnalités du XX‐e siècle, qui l’applique à l’histoire du monde par ses personnages, leurs époques et les conceptions de vie correspondantes, phénomène exprimé à l’aide de l’art littéraire d’une complexité particulière, invitant à la méditation et aux réactions nécessaires. Le but de sa création est d’éclaircir la personnalité humaine dans sa variété expressive, modulée par le contexte philosophique dans lequel chacun réagit conformément à (...)
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  49.  22
    La historiografia paraguaya. Los textos escolares de historia. Experiencia vivida en la posguerra de 1870.Cecília Silvera - 2011 - Dialogos 15 (1).
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  50.  41
    Ethics case reflection sessions: Enablers and barriers.Cecilia Bartholdson, Bert Molewijk, Kim Lützén, Klas Blomgren & Pernilla Pergert - 2018 - Nursing Ethics 25 (2):199-211.
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