Results for 'Blake Judith'

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  1. IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015).Huang Jingshan, Eilbeck Karen, A. Blake Judith, Dou Dejing, A. Natale Darren, Ruttenberg Alan, Smith Barry, T. Zimmermann Michael, Jiang Guoqian & Lin Yu - 2015
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  2. A Domain Ontology for the Non-Coding RNA Field.Jingshan Huang, Karen Eilbeck, Judith A. Blake, Dejing Dou, Darren A. Natale, Alan Ruttenberg, Barry Smith, Michael T. Zimmermann, Guoqian Jiang & Yu Lin - 2015 - In IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015). pp. 621-624.
    Identification of non-coding RNAs (ncRNAs) has been significantly enhanced due to the rapid advancement in sequencing technologies. On the other hand, semantic annotation of ncRNA data lag behind their identification, and there is a great need to effectively integrate discovery from relevant communities. To this end, the Non-Coding RNA Ontology (NCRO) is being developed to provide a precisely defined ncRNA controlled vocabulary, which can fill a specific and highly needed niche in unification of ncRNA biology.
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    Using Ontology Visualization to Facilitate Access to Knowledge About Human Disease Genes.Mary E. Dolan & Judith A. Blake - 2009 - Applied ontology 4 (1):35-49.
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  4. Finding Our Way Through Phenotypes.Andrew R. Deans, Suzanna E. Lewis, Eva Huala, Salvatore S. Anzaldo, Michael Ashburner, James P. Balhoff, David C. Blackburn, Judith A. Blake, J. Gordon Burleigh, Bruno Chanet, Laurel D. Cooper, Mélanie Courtot, Sándor Csösz, Hong Cui, Barry Smith & Others - 2015 - PLoS Biol 13 (1):e1002033.
    Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across many key fields in biology, including genomics, systems biology, development, medicine, evolution, ecology, and systematics. Here we survey the current phenomics landscape, including data resources and handling, and the progress that (...)
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  5. Protein-Centric Connection of Biomedical Knowledge: Protein Ontology Research and Annotation Tools.Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei Evsikov, Hongzhan Huang, Barry Smith & Others - 2011 - In Proceedings of the 2nd International Conference on Biomedical Ontology. Buffalo, NY: NCOR. pp. 285-287.
    The Protein Ontology (PRO) web resource provides an integrative framework for protein-centric exploration and enables specific and precise annotation of proteins and protein complexes based on PRO. Functionalities include: browsing, searching and retrieving, terms, displaying selected terms in OBO or OWL format, and supporting URIs. In addition, the PRO website offers multiple ways for the user to request, submit, or modify terms and/or annotation. We will demonstrate the use of these tools for protein research and annotation.
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  6. The Protein Ontology: A Structured Representation of Protein Forms and Complexes.Darren Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D’Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang & Cathy H. Wu - 2011 - Nucleic Acids Research 39 (1):D539-D545.
    The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and modified forms. Initially focused on proteins found in human, mouse and Escherichia coli, PRO now includes representations of protein complexes. The PRO Consortium works in concert with the developers of other biomedical ontologies and protein knowledge bases to provide the ability to formally organize and integrate representations of precise protein forms so as to enhance accessibility to results of protein (...)
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  7. Protein Ontology: A Controlled Structured Network of Protein Entities.A. Natale Darren, N. Arighi Cecilia, A. Blake Judith, J. Bult Carol, R. Christie Karen, Cowart Julie, D’Eustachio Peter, D. Diehl Alexander, J. Drabkin Harold, Helfer Olivia, Barry Smith & Others - 2013 - Nucleic Acids Research 42 (1):D415-21..
    The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to (...)
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  8. The Representation of Protein Complexes in the Protein Ontology.Carol Bult, Harold Drabkin, Alexei Evsikov, Darren Natale, Cecilia Arighi, Natalia Roberts, Alan Ruttenberg, Peter D’Eustachio, Barry Smith, Judith Blake & Cathy Wu - 2011 - BMC Bioinformatics 12 (371):1-11.
    Representing species-specific proteins and protein complexes in ontologies that are both human and machine-readable facilitates the retrieval, analysis, and interpretation of genome-scale data sets. Although existing protin-centric informatics resources provide the biomedical research community with well-curated compendia of protein sequence and structure, these resources lack formal ontological representations of the relationships among the proteins themselves. The Protein Ontology (PRO) Consortium is filling this informatics resource gap by developing ontological representations and relationships among proteins and their variants and modified forms. Because (...)
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  9. Framework for a Protein Ontology.Darren A. Natale, Cecilia N. Arighi, Winona Barker, Judith Blake, Ti-Cheng Chang, Zhangzhi Hu, Hongfang Liu, Barry Smith & Cathy H. Wu - 2007 - BMC Bioinformatics 8 (Suppl 9):S1.
    Biomedical ontologies are emerging as critical tools in genomic and proteomic research where complex data in disparate resources need to be integrated. A number of ontologies exist that describe the properties that can be attributed to proteins; for example, protein functions are described by Gene Ontology, while human diseases are described by Disease Ontology. There is, however, a gap in the current set of ontologies—one that describes the protein entities themselves and their relationships. We have designed a PRotein Ontology (PRO) (...)
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  10.  17
    Gene Ontology Annotations: What They Mean and Where They Come From.P. Hill David, Barry Smith, S. McAndrews-Hill Monica & A. Blake Judith - 2008 - BMC Bioinformatics 9 (Suppl 5):S2.
    The computational genomics community has come increasingly to rely on the methodology of creating annotations of scientific literature using terms from controlled structured vocabularies such as the Gene Ontology (GO). We here address the question of what such annotations signify and of how they are created by working biologists. Our goal is to promote a better understanding of how the results of experiments are captured in annotations in the hope that this will lead to better representations of biological reality through (...)
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  11. The Non-Coding RNA Ontology : A Comprehensive Resource for the Unification of Non-Coding RNA Biology.Huang Jingshan, Eilbeck Karen, Barry Smith, A. Blake Judith, Dou Dejing, Huang Weili, A. Natale Darren, Ruttenberg Alan, Huan Jun & T. Zimmermann Michael - 2016 - Journal of Biomedical Semantics 7 (1).
    In recent years, sequencing technologies have enabled the identification of a wide range of non-coding RNAs (ncRNAs). Unfortunately, annotation and integration of ncRNA data has lagged behind their identification. Given the large quantity of information being obtained in this area, there emerges an urgent need to integrate what is being discovered by a broad range of relevant communities. To this end, the Non-Coding RNA Ontology (NCRO) is being developed to provide a systematically structured and precisely defined controlled vocabulary for the (...)
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  12. The Development of Non-Coding RNA Ontology.Jingshan Huang, Karen Eilbeck, Barry Smith, Judith Blake, Deijing Dou, Weili Huang, Darren Natale, Alan Ruttenberg, Jun Huan, Michael Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison Strachan, Nisansa de Silva & Mohan Vamsi Kasukurthi - 2016 - International Journal of Data Mining and Bioinformatics 15 (3):214--232.
    Identification of non-coding RNAs (ncRNAs) has been significantly improved over the past decade. On the other hand, semantic annotation of ncRNA data is facing critical challenges due to the lack of a comprehensive ontology to serve as common data elements and data exchange standards in the field. We developed the Non-Coding RNA Ontology (NCRO) to handle this situation. By providing a formally defined ncRNA controlled vocabulary, the NCRO aims to fill a specific and highly needed niche in semantic annotation of (...)
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  13. The Development of Non-Coding RNA Ontology.Huang Jingshan, Eilbeck Karen, Smith Barry, Blake Judith, A. Dou, Dejing Huang, Weili Natale, A. Darren, Ruttenberg Alan, Huan Jun, Zimmermann Michael & T. Others - 2016 - International Journal of Data Mining and Bioinformatics 15 (3):214--232.
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  14. OmniSearch: A Semantic Search System Based on the Ontology for MIcroRNA Target Gene Interaction Data.Huang Jingshan, Gutierrez Fernando, J. Strachan Harrison, Dou Dejing, Huang Weili, A. Blake Judith, Barry Smith, Eilbeck Karen, A. Natale Darren & Lin Yu - 2016 - Journal of Biomedical Semantics 7 (1):1.
    In recent years, sequencing technologies have enabled the identification of a wide range of non-coding RNAs (ncRNAs). Unfortunately, annotation and integration of ncRNA data has lagged behind their identification. Given the large quantity of information being obtained in this area, there emerges an urgent need to integrate what is being discovered by a broad range of relevant communities. To this end, the Non-Coding RNA Ontology (NCRO) is being developed to provide a systematically structured and precisely defined controlled vocabulary for the (...)
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  15. IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015),.Huang Jingshan, Gutierrez Fernando, Dou Dejing, A. Blake Judith, Eilbeck Karen, A. Natale Darren, Smith Barry, Lin Yu, Wang Xiaowei & Liu Zixing - 2015
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  16. A Semantic Approach for Knowledge Capture of microRNA-Target Gene Interactions.Jingshan Huang, Fernando Gutierrez, Dejing Dou, Judith A. Blake, Karen Eilbeck, Darren A. Natale, Barry Smith, Yu Lin, Xiaowei Wang & Zixing Liu - 2015 - In IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM 2015),. pp. 975-982.
    Research has indicated that microRNAs (miRNAs), a special class of non-coding RNAs (ncRNAs), can perform important roles in different biological and pathological processes. miRNAs’ functions are realized by regulating their respective target genes (targets). It is thus critical to identify and analyze miRNA-target interactions for a better understanding and delineation of miRNAs’ functions. However, conventional knowledge discovery and acquisition methods have many limitations. Fortunately, semantic technologies that are based on domain ontologies can render great assistance in this regard. In our (...)
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  17.  10
    Bones in the Basement: Postmortem Racism in Nineteenth-Century Medical Training. Robert L. Blakely, Judith M. Harrington. [REVIEW]Todd L. Savitt - 1999 - Isis 90 (2):379-380.
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  18. TGF-Beta Signaling Proteins and the Protein Ontology.Arighi Cecilia, Liu Hongfang, Natale Darren, Barker Winona, Drabkin Harold, Blake Judith, Barry Smith & Wu Cathy - 2009 - BMC Bioinformatics 10 (Suppl 5):S3.
    The Protein Ontology (PRO) is designed as a formal and principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from a classification of proteins on the basis of evolutionary relationships at the homeomorphic level to the representation of the multiple protein forms of a gene, including those resulting from alternative splicing, cleavage and/or posttranslational modifications. Focusing specifically on the TGF-beta signaling proteins, we describe the building, curation, usage and dissemination of PRO. PRO provides a framework (...)
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  19.  21
    Climate Change Injustice.Blake Francis - 2022 - Environmental Ethics 44 (1):5-24.
    Many climate change ethicists argue wealthy nations have duties of justice to combat climate change. However, Posner and Weisbach disagree because there is a poor fit between the principles of justice and the problem of climate change. I argue in this paper that Posner and Weisbach’s argument relies on what Judith Shklar calls “the normal model of justice,” the view that injustice results when principles are violated. Applying Shklar’s critique of normal justice, I argue that Posner and Weisbach’s argument (...)
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  20. Abortion: New Directions for Policy StudiesAbortion: New Directions for Policy Studies. [REVIEW]C. P. V. - 1978 - Review of Metaphysics 32 (1):145-145.
    There are four other contributors to this collection in addition to the editors who have each contributed an essay and who jointly authored the last essay sketching their proposal for a new direction for an abortion policy. Judith Blake presents an excellent summary and interpretation of opinion surveys indicating that the American public is more restrictive in its views of key factors relating to abortion than the Supreme Court. She wants to alert pro-abortionists to the nature of their (...)
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  21. The Judith Butler Reader.Sara Salih & Judith Butler - 2004 - Wiley-Blackwell.
    The Judith Butler Reader is a collection of writings that span her impressive career and trace her intellectual history. Judith Butler, author of influential books such as Gender Trouble, has built her international reputation as a theorist of power, gender, sexuality and identity Organized in active collaboration between Judith Butler and Sara Salih Collects together writings that span Butler’s impressive career as a critical philosopher, including selections from both well-known and lesser-known works Includes an introduction and editorial (...)
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  22. Judith Rees.Judith Rees - 1989 - In Derek Gregory & Rex Walford (eds.), Horizons in Human Geography. Barnes & Noble. pp. 364.
     
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  23.  20
    Boss, Judith and James M. Nuzum.Judith Boss, Giordano Bruno, Vere Chappell, John Cottingham, Peter A. Danielson, Rene Descartes, John Finis, R. J. Hollingdale & Vittorio Hösle - 1999 - Teaching Philosophy 22 (2):237.
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    Judith Butler in Conversation: Analyzing the Texts and Talk of Everyday Life.Judith Butler & Bronwyn Davies (eds.) - 2007 - Routledge.
    Contains responses from social critic Judith Butler to essays on her work from across the social sciences, humanities, and behavioral sciences.
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  25.  5
    Judith Lorber.Judith Lorber - 2011 - Gender and Society 25 (3):355-359.
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  26.  34
    The Faces of Injustice Judith N. Shklar New Haven and London: Yale University Press, 1990, Vii + 144 Pp. [REVIEW]Judith Baker - 1993 - Dialogue 32 (1):197-.
  27.  15
    Judith Butler: un compromiso vivo con la política. Entrevista con Judith Butler.Emma Ingala & Judith Butler - 2017 - Isegoría 56:21.
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  28.  43
    Reply From Judith Butler.Judith Butler - 2018 - Philosophy and Phenomenological Research 96 (1):243-249.
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  29.  13
    Pleasures of Benthamism, K. Blake.Kathleen Blake - 2012 - Revue D’Études Benthamiennes (11).
    Le propos est précédé par une illustration, la seule de l’ouvrage, extraite d’une Histoire de l’industrie du coton en Grande-Bretagne parue en 1835. Il s’agit de la reproduction d’un dessin représentant le processus d’impression de motifs sur du calicot. On y voit deux hommes travailler, de façon semble-t-il minutieuse, sur deux grandes machines installées dans un atelier spacieux. L’illustration est égayée par les motifs imprimés sur les pans de tissu, qui occupent une grande partie de l’esp..
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  30. Interview: Judith Butler: Gender as Performance.Peter Osborne, Lynne Segal & Judith Butler - 1994 - Radical Philosophy 67.
  31. FEDEFAM: 30 años de lucha contra la desaparición forzada, 1981-2011: Entrevista con Judith Galarza CAMPOS. Caracas. Venezuela, abril de 2011. [REVIEW]Mario Ayala & Judith Galarza Campos - 2011 - Aletheia: Anuario de Filosofía 2 (3):12 - 6.
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  32. Politics, Power and Ethics: A Discussion Between Judith Butler and William Connolly.Judith Butler & William E. Connolly - 2000 - Theory and Event 4 (2).
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  33.  87
    Janet W. Astington, Paul L. Harris and David R. Olson, Eds., Developing Theories of Mind; Henry M. Wellman, the Child's Theory of Mind; Douglas Frye and Chris Moore, Eds., Children's Theories of Mind: Mental States and Social Understanding Judith Felson Duchan. [REVIEW]Judith Felson Duchan - 2000 - Minds and Machines 10 (2):277-288.
  34.  29
    Politik, Körper, Vulnerabilität Ein Gespräch mit Judith Butler.Judith Butler - 2018 - In Sergej Seitz, Tatjana Schönwälder-Kuntze & Gerald Posselt (eds.), Judith Butlers Philosophie des Politischen: Kritische Lektüren. Transcript Verlag. pp. 299-322.
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  35.  36
    The Future of Sexual Difference: An Interview with Judith Butler and Drucilla Cornell.Judith Butler, Drucilla Cornell, Cheah Pheng & Elizabeth Grosz - 1998 - Diacritics 28 (1):19-42.
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  36. The Future of Sexual Difference: An Interview with Judith Butler and Drucilla Cornell.Judith Butler, Drucilla Cornell, Pheng Cheah & E. A. Grosz - 1998 - Diacritics 28 (1):19-42.
  37. Simbolismo y extravío en el mundo lírico de Beulah de William Blake.William Blake - 1997 - Philosophy 24:59-63.
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  38. Theories of Scientific Method the Renaissance Through the Nineteenth Century, by Ralph M. Blake, Curt J. Ducasse, and Edward H. Madden. Edited by Edward H. Madden. --. [REVIEW]Ralph M. Blake - 1960 - University of Washington Press.
     
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  39. VIOLENCE D'ÉTAT, COALITIONS, SUJETS: Un Entretien de Gabriel GIRARD Et Olivier NEVEUX Avec Judith BUTLER.Gabriel Girard, Olivier Neveux & Judith Butler - 2009 - Actuel Marx 45 (1):164 - 174.
    State Violence, Coalitions, Subjects After a consideration of the reception of her work in France , Judith Butler assesses the political contribution of queer movements and minority struggles. She addresses the need for the left to reappropriate the forthright critique of the State and its violence and to examine the way minorities are produced. To do so, her analysis starts from the question of immigrant persons. She highlights the issues and the difficulties which are involved, if there is to (...)
     
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  40.  14
    Blake, Michael. Justice, Migration, and Mercy. Oxford: Oxford University Press, 2019. Pp. 280. $35.00 (Cloth). [REVIEW]Matthew Lister - 2021 - Ethics 131 (3):600-605.
    For several years Michael Blake has been among the most important contributors to the philosophical literature on immigration. This book is therefore greatly anticipated, and develops a number of fruitful arguments. Although I will argue that the account is unsuccessful or incomplete at key points, it’s clearly an important work of relevance to those working on immigration, as well as to political philosophers more generally. In particular, Blake provides powerful arguments against the claim that “open borders” are required (...)
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  41.  15
    Blake and Tradition. [REVIEW]M. R. C. - 1969 - Review of Metaphysics 23 (1):137-137.
    In this source study of the hermetic and prophetic poetry of William Blake, Kathleen Raine adds strength to the theory that it takes a poet to explain one. The present volumes, expanded from the 1962 Mellon Lectures in the Fine Arts, are the result of twenty years' research; in scholarship and in style, they well might serve as a model for all source studies to come. Raine traces Blake's borrowings from Neoplatonism, from alchemy, from classical and hermetic sources, (...)
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  42.  4
    Blake's Composite Art a Study of the Illuminated Poetry.W. J. Thomas Mitchell - 1978 - Princeton University Press.
    Can poem and picture collaborate successfully in a composite art of text and design? Or does one art inevitably dominate the other? W.J.T. Mitchell maintains that Blake's illuminated poems are an exception to Suzanne Langer's claim that "there are no happy marriages in art—only successful rape." Drawing on over one hundred reproductions of Blake's pictures, this book shows that neither the graphic nor the poetic aspect of his composite art consistently predominates: their relationship is more like an energetic (...)
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  43. Toleration and Theocracy: How Liberal States Should Think About Religious States.Michael Blake - 2007 - Journal of International Affairs 61 (1):1-17.
  44. Berkeley, Blake and the New Age.Kathleen Raine - 1977 - Golgonooza Press.
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  45. "Blake: Tiriel": G. E. Bentley, Jr. [REVIEW]H. R. Wackrill - 1968 - British Journal of Aesthetics 8 (2):203.
     
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  46. The "Ei Esti-Ti Esti" Distinction in Aristotle's Theory of Science.Blake Landor - 1980 - Dissertation, University of Toronto (Canada)
    The Posterior Analytics has long been considered to raise and to go part of the way toward answering important philosophical questions concerning existence and essence. In the recent literature, however, scholars have been taking the view that the existence-essence distinction is not captured.
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  47. William Blake: The Finger on the Furnace. [REVIEW]R. A. - 1956 - Review of Metaphysics 10 (2):363-363.
    A study of Blake's poetry and its use of Kabalistic imagery to depict the fall of man to selfhood and the hope of regeneration through the "sweet science" of imagination.--A. R.
     
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  48. Das Undarstellbare der Politik Zur Hegemonietheorie Ernesto Laclaus.Judith Butler & Oliver Marchart - 1998
  49. From Blake to "a Vision".Kathleen Raine - 1979 - Dublin : Dolmen Press.
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  50.  77
    Recognition and Ambivalence: Judith Butler, Axel Honneth, and Beyond.Heikki Ikäheimo, Kristina Lepold & Titus Stahl (eds.) - 2021 - New York: Columbia University Press.
    Recognition is one of the most debated concepts in contemporary social and political thought. Its proponents, such as Axel Honneth, hold that to be recognized by others is a basic human need that is central to forming an identity, and the denial of recognition deprives individuals and communities of something essential for their flourishing. Yet critics including Judith Butler have questioned whether recognition is implicated in structures of domination, arguing that the desire to be recognized can motivative individuals to (...)
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