The Emotion Ontology is an ontology covering all aspects of emotional and affective mental functioning. It is being developed following the principles of the OBO Foundry and Ontological Realism. This means that in compiling the ontology, we emphasize the importance of the nature of the entities in reality that the ontology is describing. One of the ways in which realism-based ontologies are being successfully used within biomedical science is in the annotation of scientific research results in publicly available databases. (...) Such annotation enables several objectives, including searching, browsing and cross-database data integration. A key benefit conferred by realismbased ontology is that suitably annotated research results are able to be aggregated and compared in a fashion that is based on the underlying reality that the science is studying. This has the potential of increasing the power of statistical analysis and meta-analysis in data-driven science. This aspect has been fruitfully exploited in the investigation of the functions of genes in molecular biology. Cognitive neuroscience uses functional neuroimaging to investigate the brain correlates of areas of mental functioning such as memory, planning and emotion. The use of functional neuroimaging to study affective phenomena such as the emotions is called ‘affective neuroscience’. BrainMap is the largest curated database of coordinates and metadata for studies in cognitive neuroscience, including affective neuroscience (Laird et al., 2005). BrainMap data is already classified and indexed using a terminology for classification, called the ‘Cognitive Paradigm Ontology’ (CogPO), that has been developed to facilitate searching and browsing. However, CogPO has been developed specifically for the BrainMap database, and the data are thus far not annotated to a realism-based ontology which would allow the discovery of interrelationships between research results across different databases on the basis of what the research is about. In this contribution, we describe ongoing work that aims to annotate affective neuroscience data, starting with the BrainMap database, using the Emotion Ontology. We describe our objectives and technical approach to the annotation, and mention some of the challenges. (shrink)

This annotated bibliography is meant for those who are studying Samkhya and Yoga.

Dans cet article, nous présentons une étude de faisabilité sur l’annotation des passages entre guillemets, phénomènes linguistiques polyphoniques qui résistent souvent à une lecture univoque et à un schéma d’annotation simplificateur. La faisabilité de l’annotation a été testée à travers une étude inter-annotateurs qui a montré, avec un accord pour 80% des annotations effectuées, que des valeurs stables (dénomination, citation, autonymie, commentaires modalisants) pouvaient être postulées. Les cas de désaccord, en partie inévitables face à la complexité du (...) phénomène, peuvent être en partie réduits par un repérage systématique des marques formelles (marques typo-dispositionnelles, éléments du lexique et formules syntaxiques) et un inventaire détaillé des contextes d’emploi pour chaque valeur. Certaines valeurs demeurant ambiguës, il convient toutefois de prévoir dans l’annotation des cas de cumul de valeurs (le passage entre guillemets cumule plusieurs valeurs compatibles) ou d’ambiguïtés (plusieurs interprétations différentes sont possibles) en cas de désaccord des annotateurs. (shrink)

Chen Guying’s _Laozi_ includes some of the most significant traditional commentary and influential contemporary scholarship. This book completely changed _Laozi_ studies in China, and its English translation gives scholars a unique inroad to Chinese perspectives on the _Laozi_.

Argument schemes are abstractions substantiating the inferential connection between premise(s) and conclusion in argumentative communication. Identifying such conventional patterns of reasoning is essential to the interpretation and evaluation of argumentation. Whether studying argumentation from a theory-driven or data-driven perspective, insight into the actual use of argumentation in communicative practice is essential. Large and reliably annotated corpora of argumentative discourse to quantitatively provide such insight are few and far between. This is all the more true for argument scheme corpora, which tend (...) to suffer from a combination of limited size, poor validation, and the use of ad hoc restricted typologies. In the current paper, we describe the annotation of schemes on the basis of two distinct classifications: Walton’s taxonomy of argument schemes, and Wagemans’ Periodic Table of Arguments. We describe the annotation procedure for each, and the quantitative characteristics of the resulting annotated text corpora. In doing so, we extend the annotation of the preexisting US2016 corpus of televised election debates, resulting in, to the best of our knowledge, the two largest consistently annotated corpora of schemes in argumentative dialogue publicly available. Based on evaluation in terms of inter-annotator agreement, we propose further improvements to the guidelines for annotating schemes: the argument scheme key, and the Argument Type Identification Procedure. (shrink)

Dans cet article, nous présentons une étude de faisabilité sur l’annotation des passages entre guillemets, phénomènes linguistiques polyphoniques qui résistent souvent à une lecture univoque et à un schéma d’annotation simplificateur. La faisabilité de l’annotation a été testée à travers une étude inter-annotateurs qui a montré, avec un accord pour 80% des annotations effectuées, que des valeurs stables (dénomination, citation, autonymie, commentaires modalisants) pouvaient être postulées. Les cas de désaccord, en partie inévitables face à la complexité du (...) phénomène, peuvent être en partie réduits par un repérage systématique des marques formelles (marques typo-dispositionnelles, éléments du lexique et formules syntaxiques) et un inventaire détaillé des contextes d’emploi pour chaque valeur. Certaines valeurs demeurant ambiguës, il convient toutefois de prévoir dans l’annotation des cas de cumul de valeurs (le passage entre guillemets cumule plusieurs valeurs compatibles) ou d’ambiguïtés (plusieurs interprétations différentes sont possibles) en cas de désaccord des annotateurs. (shrink)

Presents Darwin's masterwork on evolution with extensive annotations by an experienced field biologist.

In the current paper we consider theories with vocabulary containing a number of binary and unary relation symbols. Binary relation symbols represent labeled edges of a graph and unary relations represent unique annotations of the graph's nodes. Such theories, which we call annotation theories^ can be used in many applications, including the formalization of argumentation, approximate reasoning, semantics of logic programs, graph coloring, etc. We address a number of problems related to annotation theories over finite models, including satisfiability, (...) querying problem, specification of preferred models and model checking problem. We show that most of considered problems are NPTime- or co-NPTime-complete. In order to reduce the complexity for particular theories, we use second-order quantifier elimination. To our best knowledge none of existing methods works in the case of annotation theories. We then provide a new second-order quantifier elimination method for stratified theories, which is successful in the considered cases. The new result subsumes many other results, including those of [2, 28, 21]. (shrink)

Scholarly translations of selections from the original classical Chinese texts and correcting or re-interpreting Sadler's 1944 translations as required for correctness and clarity.Scholarly annotations to Sadler's translation, including; discussion and explanation of textual content of classical texts, including elaborations on meanings, philosophical and biographical information; drawing linkages between the original textual content with strategic and military developments and events in the warfare and politics of East Asia in the recent historical period; discussion on points of the field of strategic studies.

Dans un premier temps, cette contribution fournit une présentation rapide des corpus médiévaux, principalement pour l’anglais et le français, en relation avec des projets d’annotation centrés sur l’annotation syntaxique. La seconde partie traite des aspects spécifiques de l’annotation syntaxique pour les textes d’ancien français et s’intéresse particulièrement aux interactions entre la préannotation automatique et les outils d’annotation manuelle.

Dans le cadre de la construction du corpus PhraseoRoChe, un corpus diachronique rassemblant des romans de chevalerie du 13e au 17e siècle, cet article s’intéresse aux performances de différents analyseurs (étiqueteurs, lemmatiseurs, parseurs en dépendances) entrainés sur des états de langue connexes allant de l’ancien français au moyen français et au français moderne. Nous étudions ainsi la possibilité d’étendre ces analyseurs au-delà des états de langues précis sur lesquels ils ont été entrainés, en s’appuyant notamment sur les divergences entre analyseurs (...) pour identifier les annotations les moins fiables, et ainsi prioriser les interventions manuelles de correction / validation des annotations automatiques. Nous étudions également les possibilités offertes par un traitement superficiel de modernisation graphique pour tirer parti d’un analyseur moderne appliqué à des états de langue anciens. (shrink)

MicroRNAs are non‐coding regulators of gene expression and key factors in development, disease, and targets for bioengineering. Consequently, microRNAs have become essential elements of already burgeoning draft plant genome descriptions where their annotation is often particularly poor, contributing unduly to the corruption of public databases. Using the Citrus sinensis as an example, we highlight and review common failings of miRNAome annotations. Understanding and exploiting the role of miRNAs in plant biology will be stymied unless the research community acts decisively (...) to improve the accuracy of miRNAome annotations. We encourage genome annotation teams to do it right or not at all. (shrink)

A selective annotated bibliography of recent literature on a priori knowledge.

We present a multi-conclusion natural deduction calculus characterizing the dynamic reasoning typical of Adaptive Logics. The resulting system AdaptiveND is sound and complete with respect to the propositional fragment of adaptive logics based on CLuN. This appears to be the first tree-format presentation of the standard linear dynamic proof system typical of Adaptive Logics. It offers the advantage of full transparency in the formulation of locally derivable rules, a connection between restricted inference-rules and their adaptive counterpart, and the formulation of (...) abnormalities as a subtype of well-formed formulas. These features of the proposed calculus allow us to clarify the relation between defeasible and multiple-conclusion approaches to classical recapture. (shrink)

8000 Word annotated bibliography on the Phaedo, with roughly 70 entries. Note that the subscription version is a bit easier to navigate. The hyperlinks work in this pdf, but you can not as easily jump to the different sections.

Dans un premier temps, cette contribution fournit une présentation rapide des corpus médiévaux, principalement pour l’anglais et le français, en relation avec des projets d’annotation centrés sur l’annotation syntaxique. La seconde partie traite des aspects spécifiques de l’annotation syntaxique pour les textes d’ancien français et s’intéresse particulièrement aux interactions entre la préannotation automatique et les outils d’annotation manuelle.

As against the Buddhist view that everything is momentary Udayana argues that recognitive perception, such as that this is the same pot I saw before, provides evidence for permanence. Such recognitive perception is common experience and cannot be set aside without compelling evidence. The Buddhist objects that such experience is not reliable; even a burning flame is recognized to be the same, but it is clear from fuel consumption that it is not. Udayana agrees that in the case of a (...) burning flame it cannot be the same flame because then it would have to have opposed features (such as being fueled by more oil before and less oil now). But there is no compelling evidence for the claim that the pot or I would have to have opposed features if enduring. The Buddhist claim that anything enduring must have opposed features such as being both capable and incapable of being productive is groundless. Such features are not opposed and may be explained as being due to availability or non-availability of auxiliary causal conditions and so on. (shrink)

Jnanasri, a famous 10th century Buddhist philosopher, holds that internal states like cognition alone are real and that there is no external, independent physical world. He argues that one may perceive something, say, a horse, irrespective of whether there is a horse or not. Accordingly, one cannot justifiably move from cognition to the external, independent existence of the object of cognition. Udayana points out that one misperceives only something that one in the ultimate analysis has perceived before. While the previous (...) perception may be false, it cannot be false always for then there is a vicious infinite regress. So true perceptions must also be admitted. The best explanation of true perception is that it is perceiving something where and when it is and that of false perception is that it is perception of something that is elsewhere or elsewhen or both. Thus, the Nyaya claims, the object of misperception too is external and independent of perception. Since the Nyaya position is not refuted, the above argument of Jnanasri suffers from assuming the bone of contention. (shrink)

In _Annotations_ Nahum Dimitri Chandler offers a philosophical interpretation of W. E. B. Du Bois’s 1897 American Negro Academy address, “The Conservation of Races.” Chandler approaches Du Bois as a generative and original philosophical thinker-writer on the status and historical implication of matters of human difference, both the fact of and the very idea thereof. Chandler proposes both a close reading of Du Bois’s engagement of the concept of so-called race and a deep meditation on Du Bois’s conceptualization of historicity (...) in general. He elaborates on the way Du Bois’s thought in this address can give an account of the organization of the historicity that yields the emergence of something like the African American, at once with its own internal dimensions and yet also as an originary articulation of forces and possibilities that have world historical implications. Chandler refigures Du Bois’s thought as a vital theoretical resource for rethinking our concepts of differences among humans and, so too, our understanding of modern historicity itself. (shrink)

Annotations to the Speech of the Muses (Plato Republic 546b-c).

This new annotated translation, by a scholar of ancient China, aims for fidelity to the original text as well as clarity for a modern audience.