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Profile: Barry Smith (State University of New York, Buffalo, National Center for Ontological Research)
Profile: Barry C Smith (School of Advanced Study, University of London)
  1. John R. Searle, Barry Smith, Leo Zaibert & Josef Moural (2001). Rationality in Action: A Symposium. Philosophical Explorations 4 (2):66 – 94.
    John Searle's forthcoming book 'Rationality in Action' presents a sophisticated and innovative account of the rationality of action. In the book Searle argues against what he calls the classical model of rationality. In the debate that follows Barry Smith challenges some implications of Searle's account. In particular, Smith suggests that Searle's distinction between observer-relative and observer-independent facts of the world is ill suited to accommodate moral concepts. Leo Zaibert takes on Searle's notion of the gap. The gap exists between the (...)
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  2. Barry Smith (2014). The Relevance of Philosophical Ontology to Information and Computer Science. In Ruth Hagengruber & Uwe Riss (eds.), Philosophy, Computing and Information Science. Chatto and Pickering 75-83.
    The discipline of ontology has enjoyed a checkered history since 1606, with a significant expansion in recent years. We focus here on those developments in the recent history of philosophy which are most relevant to the understanding of the increased acceptance of ontology, and especially of realist ontology, as a valuable method also outside the discipline of philosophy.
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  3. C. Macdonald, Barry C. Smith & C. J. G. Wright (1998). Knowing Our Own Minds: Essays in Self-Knowledge. Oxford University Press.
    Self-knowledge is the focus of considerable attention from philosophers: Knowing Our Own Minds gives a much-needed overview of current work on the subject, bringing together new essays by leading figures. Knowledge of one's own sensations, desires, intentions, thoughts, beliefs, and other attitudes is characteristically different from other kinds of knowledge: it has greater immediacy, authority, and salience. The contributors examine philosophical questions raised by the distinctive character of self-knowledge, relating it to knowledge of other minds, to rationality and agency, externalist (...)
     
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  4.  68
    Francesco Furini, Rahul Rai, Barry Smith, Georgio Colombo & Venkat Krovi (2016). Development of a Manufacturing Ontology for Functionally Graded Materials. In Proceedings of International Design Engineering Technical Conferences & Computers and Information in Engineering Conference (IDETC/CIE).
    The development of manufacturing technologies for new materials involves the generation of a large and continually evolving volume of information. The analysis, integration and management of such large volumes of data, typically stored in multiple independently developed databases, creates significant challenges for practitioners. There is a critical need especially for open-sharing of data pertaining to engineering design which together with effective decision support tools can enable innovation. We believe that ontology applied to engineering (OE) represents a viable strategy for the (...)
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  5. Kevin Mulligan, Peter Simons & Barry Smith (1984). Truth-Makers. Philosophy and Phenomenological Research 44 (3):287 - 321.
    A realist theory of truth for a class of sentence holds that there are entities in virtue of which these sentences are true or false. We call such entities ‘truthmakers’ and contend that those for a wide range of sentences about the real world are moments (dependent particulars). Since moments are unfamiliar we provide a definition and a brief philosophical history, anchoring them in our ontology by showing that they are objects of perception. The core of our theory is the (...)
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  6.  20
    Selja Seppälä, Alan Ruttenberg, & Barry Smith (2016). The Functions of Definitions in Ontologies. In R. Ferrario & W. Kuhn (eds.), Formal Ontology in Information Systems. Proceedings of the Ninth International Conference (FOIS 2016). IOS Pres 37-50.
    To understand what ontologies do through their definitions, we propose a theoretical explanation of the functions of definitions in ontologies backed by empirical neuropsychological studies. Our goal is to show how these functions should motivate (i) the systematic inclusion of definitions in ontologies and (ii) the adaptation of definition content and form to the specific context of use of ontologies.
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  7. Barry Smith & John Searle (2003). An Illuminating Exchange: The Construction of Social Reality. American Journal of Economics and Sociology 62 (2):285-309.
    Part 1 of this exchange consists in a critique by Smith of Searle’s The Construction of Social Reality focusing on Searle’s use of the formula ‘X counts as Y in context C’. Smith argues that this formula works well for social objects such as dollar bills and presidents where the corresponding X terms (pieces of paper, human beings) are easy to identify. In cases such as debts and prices and money in a banks computers, however, the formula fails, because these (...)
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  8. Chris F. Taylor, Dawn Field, Susanna-Assunta Sansone, Jan Aerts, Rolf Apweiler, Michael Ashburner, Catherine A. Ball, Pierre-Alain Binz, Molly Bogue, Tim Booth, Alvis Brazma, Ryan R. Brinkman, Adam Michael Clark, Eric W. Deutsch, Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Frank Gibson, Tanya Gray, Graeme Grimes, John M. Hancock, Nigel W. Hardy, Henning Hermjakob, Randall K. Julian, Matthew Kane, Carsten Kettner, Christopher Kinsinger, Eugene Kolker, Martin Kuiper, Nicolas Le Novere, Jim Leebens-Mack, Suzanna E. Lewis, Phillip Lord, Ann-Marie Mallon, Nishanth Marthandan, Hiroshi Masuya, Ruth McNally, Alexander Mehrle, Norman Morrison, Sandra Orchard, John Quackenbush, James M. Reecy, Donald G. Robertson, Philippe Rocca-Serra, Henry Rodriguez, Heiko Rosenfelder, Javier Santoyo-Lopez, Richard H. Scheuermann, Daniel Schober, Barry Smith & Jason Snape (2008). Promoting Coherent Minimum Reporting Guidelines for Biological and Biomedical Investigations: The MIBBI Project. Nature Biotechnology 26 (8):889-896.
    Throughout the biological and biomedical sciences there is a growing need for, prescriptive ‘minimum information’ (MI) checklists specifying the key information to include when reporting experimental results are beginning to find favor with experimentalists, analysts, publishers and funders alike. Such checklists aim to ensure that methods, data, analyses and results are described to a level sufficient to support the unambiguous interpretation, sophisticated search, reanalysis and experimental corroboration and reuse of data sets, facilitating the extraction of maximum value from data sets (...)
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  9. Carolyn Korsmeyer & Barry Smith (2004). Visceral Values: Aurel Kolnai on Disgust. In Aurel Kolnai, On Disgust. 1-23.
    In 1929 when Aurel Kolnai published his essay “On Disgust” in Husserl's ]ahrbuch he could truly assert that disgust was a "sorely neglected" topic. Now, however, this situation is changing as philosophers, psychologists, and historians of culture are turning their attention not only to emotions in general but more specifically to the large and disturbing set of aversive emotions, including disgust. We here provide an account of Kolnai’s contribution to the study of the phenomenon of disgust, of his general theory (...)
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  10. Robert Arp & Barry Smith (2008). Function, Role and Disposition in Basic Formal Ontology. Nature Precedings.
    Numerous research groups are now utilizing Basic Formal Ontology as an upper-level framework to assist in the organization and integration of biomedical information. This paper provides elucidation of the three existing BFO subcategories of realizable entity, namely function, role, and disposition. It proposes one further sub-category of tendency, and considers the merits of recognizing two sub-categories of function for domain ontologies, namely, artifactual and biological function. The motivation is to help advance the coherent ontological treatment of functions, roles, and dispositions, (...)
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  11. Barry Smith (1986). The Substitution Theory of Art. Grazer Philosophische Studien 25:533-557.
    In perceptual experience we are directed towards objects in a way which establishes a real relation between a mental act and its target. In reading works of fiction we enjoy experiences which manifest certain internal similarities to such relational acts, but which lack objects. The substitution theory of art attempts to provide a reason why we seek out such experiences and the artifacts which they generate. Briefly, we seek out works of art because we enjoy the physiology and the phenomenology (...)
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  12. Barry Smith (1998). Basic Concepts of Formal Ontology. In Nicola Guarino (ed.), Formal Ontology in Information Systems. IOS Press 19--28.
    The term ‘formal ontology’ was first used by the philosopher Edmund Husserl in his Logical Investigations to signify the study of those formal structures and relations – above all relations of part and whole – which are exemplified in the subject-matters of the different material sciences. We follow Husserl in presenting the basic concepts of formal ontology as falling into three groups: the theory of part and whole, the theory of dependence, and the theory of boundary, continuity and contact. These (...)
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  13.  50
    Andrew D. Spear, Werner Ceusters & Barry Smith (2016). Functions in Basic Formal Ontology. Applied Ontology 11 (2):103-128.
    The notion of function is indispensable to our understanding of distinctions such as that between being broken and being in working order (for artifacts) and between being diseased and being healthy (for organisms). A clear account of the ontology of functions and functioning is thus an important desideratum for any top-level ontology intended for application to domains such as engineering or medicine. The benefit of using top-level ontologies in applied ontology can only be realized when each of the categories identified (...)
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  14. Barry Smith, Sivaram Arabandi, Mathias Brochhausen, Michael Calhoun, Paolo Ciccarese, Scott Doyle, Bernard Gibaud, Ilya Goldberg, Charles E. Kahn Jr, James Overton, John Tomaszewski & Metin Gurcan (2015). Biomedical Imaging Ontologies: A Survey and Proposal for Future Work. Journal of Pathology Informatics 6 (37).
    Ontology is one strategy for promoting interoperability of heterogeneous data through consistent tagging. An ontology is a controlled structured vocabulary consisting of general terms (such as “cell” or “image” or “tissue” or “microscope”) that form the basis for such tagging. These terms are designed to represent the types of entities in the domain of reality that the ontology has been devised to capture; the terms are provided with logical defi nitions thereby also supporting reasoning over the tagged data. Aim: This (...)
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  15. Peter Morosoff, Ron Rudnicki, Jason Bryant, Robert Farrell & Barry Smith (2015). Joint Doctrine Ontology: A Benchmark for Military Information Systems Interoperability. In Semantic Technology for Intelligence, Defense and Security (STIDS). CEUR Vol. 1325 2-9.
    When the U.S. conducts warfare, elements of a force are drawn from different Services and work together as a single team to accomplish an assigned mission on the basis of joint doctrine. To achieve such unified action, it is necessary that specific Service doctrines be both consistent with and subservient to joint doctrine. But there are two further requirements that flow from the ways in which unified action increasingly involves not only live forces but also automated systems. First, the information (...)
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  16.  93
    Barry Smith (1994). Austrian Philosophy. The Legacy of Franz Brentano. Open Court.
    This book is a survey of the most important developments in Austrian philosophy in its classical period from the 1870s to the Anschluss in 1938. But I hope that the volume will be seen also as a contribution to philosophy in its own right as an attempt to philosophize in the spirit of those, above all Roderick Chisholm, Rudolf Haller, Kevin Mulligan and Peter Simons, who have done so much to demonstrate the continued fertility of the ideas and methods of (...)
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  17. Barry Smith (2003). Ontology. In Luciano Floridi (ed.), Blackwell Guide to the Philosophy of Computing and Information. Blackwell 155-166.
    Ontology as a branch of philosophy is the science of what is, of the kinds and structures of objects, properties, events, processes and relations in every area of reality. ‘Ontology’ is often used by philosophers as a synonym of ‘metaphysics’ (a label meaning literally: ‘what comes after the Physics’), a term used by early students of Aristotle to refer to what Aristotle himself called ‘first philosophy’. Sometimes ‘ontology’ is used in a broader sense, to refer to the study of what (...)
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  18.  88
    Barry Smith (1999). Truthmaker Realism. Australasian Journal of Philosophy 77 (3):274 – 291.
    We take as our starting point a thesis to the effect that, at least for true judgments of many varieties, there are parts of reality which make such judgments are true. We argue that two distinct components are involved in this truthmaker relation. On the one hand is the relation of necessitation, which holds between an object x and a judgment p when the existence of x entails the truth of p. On the other hand is the dual notion of (...)
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  19.  16
    Niels Grewe, Ludger Jansen & Barry Smith (2016). Permanent Generic Relatedness and Silent Change. In Formal Ontology and Information Systems. CEUR, Vol. 1060 1-5.
    Given the assertion of a relation between two types, like: “Epidermis has part some Keratinocyte”, we define silent change as any kind of change of the instance-relata of the relation in question that does not change the truth-value of the respective type-level assertion. Such assertions are notoriously difficult to model in OWL 2. To address this problem, we distinguish different modes of type-level relatedness giving rise to this problem and describe a conservative extension to the BFO top-level ontology that allows (...)
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  20. Barry Smith (2012). Classifying Processes: An Essay in Applied Ontology. Ratio 25 (4):463-488.
    We begin by describing recent developments in the burgeoning discipline of applied ontology, focusing especially on the ways ontologies are providing a means for the consistent representation of scientific data. We then introduce Basic Formal Ontology (BFO), a top-level ontology that is serving as domain-neutral framework for the development of lower level ontologies in many specialist disciplines, above all in biology and medicine. BFO is a bicategorial ontology, embracing both three-dimensionalist (continuant) and four-dimensionalist (occurrent) perspectives within a single framework. We (...)
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  21. Barry Smith & Werner Ceusters (2006). HL7 RIM: An Incoherent Standard. Studies in Health Technology and Informatics 124:133–138.
    The Health Level 7 Reference Information Model (HL7 RIM) is lauded by its authors as ‘the foundation of healthcare interoperability’. Yet even after some 10 years of development work, the RIM is still subject to a variety of logical and ontological flaws, which has placed severe obstacles in the way of those who are called upon to develop implementations. We offer evidence that these obstacles are insurmountable and that the time has come to abandon an unworkable paradigm.
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  22. Barry Smith (1994). Ontologia i analiza logiczna rzeczywistości. Filozofia Nauki 2:5-22.
    The author attempts to show how mereology, taken together with certain topological notions, can yield the foundations for future investigations in formal ontology. He also attempts to show how the mereological framework allows for the direct and natural formulation of a series of theses - for example pertaining to the concept of a boundary - which can be only indirectly formulated (if at all) in set-theoretic terms. The far-reaching ain of the present framework is to serve as a basis for (...)
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  23. Kevin Mulligan & Barry Smith (1988). Mach and Ehrenfels: The Foundations of Gestalt Theory. In Barry Smith (ed.), Foundations of Gestalt Theory. 1988 124.
    Ernst Mach's atomistic theory of sensation faces problems in doing justice to our ability to perceive and remember complex phenomena such as melodies and shapes. Christian von Ehrenfels attempted to solve these problems with his theory of "Gestalt qualities", which he sees as entities depending one-sidedly on the corresponding simple objects of sensation. We explore the theory of dependence relations advanced by Ehrenfels and show how it relates to the views on the objects of perception advanced by Husserl and by (...)
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  24. Thomas Bittner, Maureen Donnelly & Barry Smith (2004). Individuals, Universals, Collections: On the Foundational Relations of Ontology. In Achille Varzi Laure Vieu (ed.), Formal Ontology in Information Systems. Proceedings of the Third International Conference. IOS Press 37–48.
    This paper provides an axiomatic formalization of a theory of foundational relations between three categories of entities: individuals, universals, and collections. We deal with a variety of relations between entities in these categories, including the is-a relation among universals and the part-of relation among individuals as well as cross-category relations such as instance-of, member-of, and partition-of. We show that an adequate understanding of the formal properties of such relations – in particular their behavior with respect to time – is critical (...)
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  25.  20
    Brendan A. Maher, A. W. Young, Philip Gerrans, John Campbell, Kai Vogeley, Valerie Gray Hardcastle, Owen Flanagan, Robert L. Woolfolk, Barry Smith & Joëlle Proust (1999). Cognitive Theories of Mental Illness. The Monist 82 (4).
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  26. Barry Smith (2005). Against Fantology. In Johann C. Marek & Maria E. Reicher (eds.), Experience and Analysis. HPT&ÖBV 153-170.
    The analytical philosophy of the last hundred years has been heavily influenced by a doctrine to the effect that the key to the correct understanding of reality is captured syntactically in the ‘Fa’ (or, in more sophisticated versions, in the ‘Rab’) of standard firstorder predicate logic. Here ‘F’ stands for what is general in reality and ‘a’ for what is individual. Hence “f(a)ntology”. Because predicate logic has exactly two syntactically different kinds of referring expressions—‘F’, ‘G’, ‘R’, etc., and ‘a’, ‘b’, (...)
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  27. Leo Obrst, Werner Ceusters, Inderjeet Mani, Steve Ray & Barry Smith (2006). The Evaluation of Ontologies: Toward Improved Semantic Interoperability. In Chris Baker & Kei H. Cheung (eds.), Semantic Web: Revolutionizing Knowledge Discovery in the Life Sciences. Springer 139-158.
    Recent years have seen rapid progress in the development of ontologies as semantic models intended to capture and represent aspects of the real world. There is, however, great variation in the quality of ontologies. If ontologies are to become progressively better in the future, more rigorously developed, and more appropriately compared, then a systematic discipline of ontology evaluation must be created to ensure quality of content and methodology. Systematic methods for ontology evaluation will take into account representation of individual ontologies, (...)
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  28. Berit Brogaard & Barry Smith (2005). On Luck, Responsibility and the Meaning of Life. Philosophical Papers 34 (3):443-458.
    A meaningful life, we shall argue, is a life upon which a certain sort of valuable pattern has been imposed by the person in question?a pattern which involves in serious ways the person having an effect upon the world. Meaningfulness is thus a special kind of value which a human life can bear. Two interrelated difficulties face ths proposal. One concerns responsiblity: how are we to account for the fact that a life that satisfies the above criteria can have more (...)
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  29. Barry Smith (1988). Gestalt Theory: An Essay in Philosophy. In Foundations of Gestalt Theory. Philosophia 11-81.
    The Austrian philosopher Christian von Ehrenfels published his essay "On 'Gestalt Qualities'" in 1890. The essay initiated a current of thought which enjoyed a powerful position in the philosophy and psychology of the first half of this century and has more recently enjoyed a minor resurgence of interest in the area of cognitive science, above all in criticisms of the so-called 'strong programme' in artificial intelligence. The theory of Gestalt is of course associated most specifically with psychologists of the Berlin (...)
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  30.  17
    Alexander Cox, Christopher Nebelecky, Ronald Rudnicki, William Tagliaferri, John L. Crassidis & Barry Smith (2016). The Space Object Ontology. In 19th International Conference on Information Fusion (FUSION 2016). IEEE
    Achieving space domain awareness requires the identification, characterization, and tracking of space objects. Storing and leveraging associated space object data for purposes such as hostile threat assessment, object identification, and collision prediction and avoidance present further challenges. Space objects are characterized according to a variety of parameters including their identifiers, design specifications, components, subsystems, capabilities, vulnerabilities, origins, missions, orbital elements, patterns of life, processes, operational statuses, and associated persons, organizations, or nations. The Space Object Ontology provides a consensus-based realist framework (...)
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  31. Barry Smith & Berit Brogaard (2000). A Unified Theory of Truth and Reference. Logique Et Analyse 43 (169-170):49–93.
    The truthmaker theory rests on the thesis that the link between a true judgment and that in the world to which it corresponds is not a one-to-one but rather a one-to-many relation. An analogous thesis in relation to the link between a singular term and that in the world to which it refers is already widely accepted. This is the thesis to the effect that singular reference is marked by vagueness of a sort that is best understood in supervaluationist terms. (...)
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  32. Barry C. Smith (2006). Why We Still Need Knowledge of Language. Croatian Journal of Philosophy 6 (18):431-457.
    In his latest book, Michael Devitt rejects Chomsky’s mentalist conception of linguistics. The case against Chomsky is based on two principal claims. First, that we can separate the study of linguistic competence from the study of its outputs: only the latter belongs to linguistic inquiry. Second, Chomsky’s account of a speaker’s competence as consisiting in the mental representation of rules of a grammar for his language is mistaken. I shall argue, fi rst, that Devitt fails to make a case for (...)
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  33. Barry C. Smith (2007). The Objectivity of Tastes and Tasting. In Questions of Taste: the philosophy of wine. Oxford University Press
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  34.  28
    Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, Mungall Christopher J., Neocles Leontis & Others (2007). The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration. Nature Biotechnology 25 (11):1251-1255.
    The value of any kind of data is greatly enhanced when it exists in a form that allows it to be integrated with other data. One approach to integration is through the annotation of multiple bodies of data using common controlled vocabularies or ‘ontologies’. Unfortunately, the very success of this approach has led to a proliferation of ontologies which itself creates obstacles to integration. The Open Biomedical Ontologies (OBO) consortium has set in train a strategy to overcome this problem. Existing (...)
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  35. Werner Ceusters & Barry Smith (2015). Biomarkers in the Ontology for General Medical Science. In Ronald Cornet (ed.), Digital Healthcare Empowering Europeans. IOS Press 155-159.
    Based on the Ontology for General Medical Science, we propose definitions for biomarkers of various types of. These definitions provide not only a complete formal representation of what biomarkers are according to the Institute of Medicine (IOM), but also remove the ambiguities and inconsistencies encountered in the documentation provided by the IOM.
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  36. Barry Smith (1992). Characteristica Universalis. In Kevin Mulligan (ed.), Language, Truth and Ontology. Kluwer 48--77.
    Recent work in formal philosophy has concentrated over-whelmingly on the logical problems pertaining to epistemic shortfall - which is to say on the various ways in which partial and sometimes incorrect information may be stored and processed. A directly depicting language, in contrast, would reflect a condition of epistemic perfection. It would enable us to construct representations not of our knowledge but of the structures of reality itself, in much the way that chemical diagrams allow the representation (at a certain (...)
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  37. Barry Smith (2010). Austrian Economics and Austrian Philosophy. In Wolfgang Grassl & Barry Smith (eds.), Austrian Economics and Austrian Philosophy.
    Austrian economics starts out from the thesis that the objects of economic science differ from those of the natural sciences because of the centrality of the economic agent. This allows a certain a priori or essentialistic aspect to economic science of a sort which parallels the a priori dimension of psychology defended by Brentano and his student Edmund Husserl. We outline these parallels, and show how the theory of a priori dependence relations outlined in Husserl’s Logical Investigations can throw light (...)
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  38. Barry Smith (1988). Knowing How Vs. Knowing That. In J. C. Nyíri & Barry Smith (eds.), Practical Knowledge. Outlines of a Theory of Traditions and Skills. Croom Helm 1--16.
    A sketch of the history of the opposition between propositional and practical knowledge is followed by a brief account of the relevant ideas of Merleau-Ponty, Polanyi, and H. and S. Dreyfus (on expertise and artificial intelligence). The paper concludes with a discussion of the work of Ryle on the notion of a ‘discipline’, drawing implications for a theory of traditions.
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  39. Barry Smith & Berit Brogaard (2003). Sixteen Days. Journal of Medicine and Philosophy 28 (1):45 – 78.
    When does a human being begin to exist? We argue that it is possible, through a combination of biological fact and philosophical analysis, to provide a definitive answer to this question. We lay down a set of conditions for being a human being, and we determine when, in the course of normal fetal development, these conditions are first satisfied. Issues dealt with along the way include: modes of substance-formation, twinning, the nature of the intra-uterine environment, and the nature of the (...)
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  40. Barry Smith (1997). On Substances, Accidents and Universals: In Defence of a Constituent Ontology. Philosophical Papers 26 (1):105-127.
    The essay constructs an ontological theory designed to capture the categories instantiated in those portions or levels of reality which are captured in our common sense conceptual scheme. It takes as its starting point an Aristotelian ontology of “substances” and “accidents”, which are treated via the instruments of mereology and topology. The theory recognizes not only individual parts of substances and accidents, including the internal and external boundaries of these, but also universal parts, such as the “humanity” which is an (...)
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  41. Barry Smith (2004). Beyond Concepts: Ontology as Reality Representation. In Formal Ontology in Information Systems (FOIS).
    The present essay is devoted to the application of ontology in support of research in the natural sciences. It defends the thesis that ontologies developed for such purposes should be understood as having as their subject matter, not concepts, but rather the universals and particulars which exist in reality and are captured in scientific laws. We outline the benefits of a view along these lines by showing how it yields rigorous formal definitions of the foundational relations used in many influential (...)
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  42. Barry Smith (2007). On Place and Space: The Ontology of the Eruv. In Christian Kanzian (ed.), Cultures: Conflict – Analysis – Dialogue. Walter de Gruyter
    ‘Eruv’ is a Hebrew word meaning literally ‘mixture’ or ‘mingling’. An eruv is an urban region demarcated within a larger urban region by means of a boundary made up of telephone wires or similar markers. Through the creation of the eruv, the smaller region is turned symbolically (halachically = according to Jewish law) into a private domain. So long as they remain within the boundaries of the eruv, Orthodox Jews may engage in activities that would otherwise be prohibited on the (...)
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  43. Laurel Cooper, Ramona Walls, Justin Elser, Maria A. Gandolfo, Dennis W. Stevenson & Barry Smith (2013). The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses. Plant and Cell Physiology 54:1-23..
    The Plant Ontology (PO; http://www.plantontology.org/) is a publicly-available, collaborative effort to develop and maintain a controlled, structured vocabulary (“ontology”) of terms to describe plant anatomy, morphology and the stages of plant development. The goals of the PO are to link (annotate) gene expression and phenotype data to plant structures and stages of plant development, using the data model adopted by the Gene Ontology. From its original design covering only rice, maize and Arabidopsis, the scope of the PO has been expanded (...)
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  44. Barry Smith (1990). Aristotle, Menger, Mises: An Essay in the Metaphysics of Economics. History of Political Economy, Annual Supplement 22:263-288.
    There are, familiarly, a range of distinct and competing accounts of the methodological underpinnings of Menger' s work. These include Leibnizian, Kantian, Millian, and even Popperian readings; but they include also readings of an Aristotelian sort, and I have myself made a number of contributions in clarification and defence of the latter. Not only, I have argued, does the historical situation in which Menger found himself point to the inevitability of the Aristotelian reading; this reading fits also very naturally to (...)
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  45.  7
    Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Lin Yu, Alfred Hero, Barry Smith & Yongqun He (2016). The Ontology of Biological and Clinical Statistics (OBCS) for Standardized and Reproducible Statistical Analysis. Journal of Biomedical Semantics 7 (53).
    Statistics play a critical role in biological and clinical research. However, most reports of scientific results in the published literature make it difficult for the reader to reproduce the statistical analyses performed in achieving those results because they provide inadequate documentation of the statistical tests and algorithms applied. The Ontology of Biological and Clinical Statistics (OBCS) is put forward here as a step towards solving this problem. Terms in OBCS, including ‘data collection’, ‘data transformation in statistics’, ‘data visualization’, ‘statistical data (...)
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  46.  58
    Barry Smith (ed.) (1982). Parts and Moments: Studies in Logic and Formal Ontology. Philosophia Verlag.
    A collection of material on Husserl's Logical Investigations, and specifically on Husserl's formal theory of parts, wholes and dependence and its influence in ontology, logic and psychology. Includes translations of classic works by Adolf Reinach and Eugenie Ginsberg, as well as original contributions by Wolfgang Künne, Kevin Mulligan, Gilbert Null, Barry Smith, Peter M. Simons, Roger A. Simons and Dallas Willard. Documents work on Husserl's ontology arising out of early meetings of the Seminar for Austro-German Philosophy.
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  47. Barry Smith, Werner Ceusters, Louis J. Goldberg & Richard Ohrbach (2011). Towards an Ontology of Pain. In Proceedings of the Conference on Ontology and Analytical Metaphysics. Keio University Press
    We present an ontology of pain and of other pain-related phenomena, building on the definition of pain provided by the International Association for the Study of Pain (IASP). Our strategy is to identify an evolutionarily basic canonical pain phenomenon, involving unpleasant sensory and emotional experience based causally in localized tissue damage that is concordant with that experience. We then show how different variant cases of this canonical pain phenomenon can be distinguished, including pain that is elevated relative to peripheral trauma, (...)
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    Barry Smith & David Woodruff Smith (eds.) (1995). The Cambridge Companion to Husserl. Cambridge University Press.
    The essays in this volume explore the full range of Husserl's work and reveal just how systematic his philosophy is. There are treatments of his most important contributions to phenomenology, intentionality and the philosophy of mind, epistemology, the philosophy of language, ontology, and mathematics. An underlying theme of the volume is a resistance to the idea, current in much intellectual history, of a radical break between 'modern' and 'postmodern' philosophy, with Husserl as the last of the great Cartesians. Husserl is (...)
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  49. Barry Smith (2014). Document Acts. In Anita Konzelmann-Ziv & Hans Bernhard Schmid (eds.), Institutions, Emotions, and Group Agents. Contributions to Social Ontology. Springer 19-31.
    The theory of document acts is an extension of the more traditional theory of speech acts advanced by Austin and Searle. It is designed to do justice to the ways in which documents can be used to bring about a variety of effects in virtue of the fact that, where speech is evanescent, documents are continuant entities. This means that documents can be preserved in such a way that they can be inspected and modified at successive points in time and (...)
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  50. Mark A. Musen, Natalya F. Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne Story & Barry Smith (2012). The National Center for Biomedical Ontology. Journal of the American Medical Informatics Association 19 (2):190-195.
    The National Center for Biomedical Ontology is now in its seventh year. The goals of this National Center for Biomedical Computing are to: create and maintain a repository of biomedical ontologies and terminologies; build tools and web services to enable the use of ontologies and terminologies in clinical and translational research; educate their trainees and the scientific community broadly about biomedical ontology and ontology-based technology and best practices; and collaborate with a variety of groups who develop and use ontologies and (...)
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