Improving a theorem of Gasarch and Hirst, we prove that if 2 ≤ k ≤ m < ω, then the following is equivalent to WKL0 over RCA0 Every locally k-colorable graph is m-colorable.

A function is diagonally non-computable if it diagonalizes against the universal partial computable function. D.n.c. functions play a central role in algorithmic randomness and reverse mathematics. Flood and Towsner asked for which functions h, the principle stating the existence of an h-bounded d.n.c. function implies Ramsey-type weak König’s lemma. In this paper, we prove that for every computable order h, there exists an ω\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\omega}$$\end{document} -model of h-DNR which is not a not (...) model of the Ramsey-type graph coloring principle for two colors and therefore not a model of RWKL. The proof combines bushy tree forcing and a technique introduced by Lerman, Solomon and Towsner to transform a computable non-reducibility into a separation over ω\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$${\omega}$$\end{document} -models. (shrink)

In this work, we focus on the problem of selecting low-level heuristics in a hyperheuristic approach with offline learning, for the solution of instances of different problem domains. The objective is to improve the performance of the offline hyperheuristic approach, identifying equivalence classes in a set of instances of different problems and selecting the best performing heuristics in each of them. A methodology is proposed as the first step of a set of instances of all problems, and the generic characteristics (...) of each instance and the performance of the heuristics in each one of them are considered to define the vectors of characteristics and make a grouping of classes. Metalearning with statistical tests is used to select the heuristics for each class. Finally, we used the Naive Bayes to test the set instances with k-fold cross-validation, and we compared all results statistically with the best-known values. In this research, the methodology was tested by applying it to the problems of capacitated vehicle routing and graph coloring. The experimental results show that the proposed methodology can improve the performance of the offline hyperheuristic approach, correctly identifying the classes of instances and applying the appropriate heuristics in each case. This is based on the statistical comparison of the results obtained with those of the state of the art of each instance. (shrink)

If [Formula: see text] is a closed Noetherian graph on a [Formula: see text]-compact Polish space with no infinite cliques, it is consistent with the choiceless set theory ZF[Formula: see text][Formula: see text][Formula: see text]DC that [Formula: see text] is countably chromatic and there is no Vitali set.

We use methods of reverse mathematics to analyze the proof theoretic strength of a theorem involving the notion of coloring number. Classically, the coloring number of a graph $G=$ is the least cardinal $\kappa$ such that there is a well-ordering of $V$ for which below any vertex in $V$ there are fewer than $\kappa$ many vertices connected to it by $E$. We will study a theorem due to Komjáth and Milner, stating that if a graph is (...) the union of $n$ forests, then the coloring number of the graph is at most $2n$. We focus on the case when $n=1$. (shrink)

The problem of when a recursive graph has a recursive k-coloring has been extensively studied by Bean, Schmerl, Kierstead, Remmel, and others. In this paper, we study the polynomial time analogue of that problem. We develop a number of negative and positive results about colorings of polynomial time graphs. For example, we show that for any recursive graph G and for any k, there is a polynomial time graph G′ whose vertex set is {0,1}* such that (...) there is an effective degree preserving correspondence between the set of k-colorings of G and the set of k-colorings of G′ and hence there are many examples of k-colorable polynomial time graphs with no recursive k-colorings. Moreover, even though every connected 2-colorable recursive graph is recursively 2-colorable, there are connected 2-colorable polynomial time graphs which have no primitive recursive 2-coloring. We also give some sufficient conditions which will guarantee that a polynomial time graph has a polynomial time or exponential time coloring. (shrink)

Studies to neutrosophic graphs happens to be not only innovative and interesting, but gives a new dimension to graph theory. The classic coloring of edge problem happens to give various results. Neutrosophic tree will certainly find lots of applications in data mining when certain levels of indeterminacy is involved in the problem. Several open problems are suggested.

In the current paper we consider theories with vocabulary containing a number of binary and unary relation symbols. Binary relation symbols represent labeled edges of a graph and unary relations represent unique annotations of the graph's nodes. Such theories, which we call annotation theories^ can be used in many applications, including the formalization of argumentation, approximate reasoning, semantics of logic programs, graph coloring, etc. We address a number of problems related to annotation theories over finite models, (...) including satisfiability, querying problem, specification of preferred models and model checking problem. We show that most of considered problems are NPTime- or co-NPTime-complete. In order to reduce the complexity for particular theories, we use second-order quantifier elimination. To our best knowledge none of existing methods works in the case of annotation theories. We then provide a new second-order quantifier elimination method for stratified theories, which is successful in the considered cases. The new result subsumes many other results, including those of [2, 28, 21]. (shrink)

The relationship of Grundy and chromatic numbers of graphs in the context of Reverse Mathematics is investi-gated.

The universal homogeneous triangle-free graph, constructed by Henson [A family of countable homogeneous graphs, Pacific J. Math.38(1) (1971) 69–83] and denoted H3, is the triangle-free analogue of the Rado graph. While the Ramsey theory of the Rado graph has been completely established, beginning with Erdős–Hajnal–Posá [Strong embeddings of graphs into coloured graphs, in Infinite and Finite Sets. Vol.I, eds. A. Hajnal, R. Rado and V. Sós, Colloquia Mathematica Societatis János Bolyai, Vol. 10 (North-Holland, 1973), pp. 585–595] and (...) culminating in work of Sauer [Coloring subgraphs of the Rado graph, Combinatorica26(2) (2006) 231–253] and Laflamme–Sauer–Vuksanovic [Canonical partitions of universal structures, Combinatorica26(2) (2006) 183–205], the Ramsey theory of H3 had only progressed to bounds for vertex colorings [P. Komjáth and V. Rödl, Coloring of universal graphs, Graphs Combin.2(1) (1986) 55–60] and edge colorings [N. Sauer, Edge partitions of the countable triangle free homogenous graph, Discrete Math.185(1–3) (1998) 137–181]. This was due to a lack of broadscale techniques. We solve this problem in general: For each finite triangle-free graph G, there is a finite number T(G) such that for any coloring of all copies of G in H3 into finitely many colors, there is a subgraph of H3 which is again universal homogeneous triangle-free in which the coloring takes no more than T(G) colors. This is the first such result for a homogeneous structure omitting copies of some nontrivial finite structure. The proof entails developments of new broadscale techniques, including a flexible method for constructing trees which code H3 and the development of their Ramsey theory. (shrink)

Special issue in honour of Landon Rabern. This special issue of Discrete Mathematics is dedicated to his memory, as a tribute to his many research achievements. It contains 10 new articles written by his collaborators, friends, and colleagues that showcase his interests.

We analyze a solitaire game in which a demon rearranges some cards after each move. The graph edge coloring theorems of K˝onig (1931) and Vizing (1964) follow from the winning strategies developed.

Many stochastic search algorithms have recently been developed to make more remarkable progress than systematic search algorithms because stochastic algorithms sometimes solve large-scale constraint satisfaction problems in a practical time. However, such stochastic algorithms have the drawback of getting stuck in local optima which are not acceptable as final solutions. We analyze an iterative improvement algorithm from the viewpoint of constraint structures causing local optima. Using the graph-coloring problem with three colors, an archetype problem to evaluate constraint satisfaction (...) algorithms, we study the local graph structures around which so many conflicts thrash. We propose a key constraint structure, an LM pair, which may induce a local optimum, and clarify the mechanism of how conflicting colors for an LM pair obstruct the stepwise refinement of hill-climbing. Experimental results show that LM pairs are strongly correlated with the search efficiency of the stochastic search algorithm. (shrink)

We observe a number of connections between recent developments in the study of constraint satisfaction problems, irredundant axiomatisation and the study of topological quasivarieties. Several restricted forms of a conjecture of Clark, Davey, Jackson and Pitkethly are solved: for example we show that if, for a finite relational structure M, the class of M-colourable structures has no finite axiomatisation in first order logic, then there is no set (even infinite) of first order sentences characterising the continuously M-colourable structures amongst compact (...) totally disconnected relational structures. We also refute a rather old conjecture of Gorbunov by presenting a finite structure with an infinite irredundant quasi-identity basis. (shrink)

Given a graph G whose set of vertices is a Polish space X, the weak Borel chromatic number of G is the least size of a family of pairwise disjoint G -independent Borel sets that covers all of X. Here a set of vertices of a graph G is independent if no two vertices in the set are connected by an edge.We show that it is consistent with an arbitrarily large size of the continuum that every closed (...) class='Hi'>graph on a Polish space either has a perfect clique or has a weak Borel chromatic number of at most ℵ1. We observe that some weak version of Todorcevic's Open Coloring Axiom for closed colorings follows from MA.Slightly weaker results hold for Fσ-graphs. In particular, it is consistent with an arbitrarily large size of the continuum that every locally countable Fσ-graph has a Borel chromatic number of at most ℵ1.We refute various reasonable generalizations of these results to hypergraphs. (shrink)

We study the position of the computable setting in the “common theory of locality” developed in [4, 5] for local problems on $\Delta $ -regular trees, $\Delta \in \omega $. We show that such a problem admits a computable solution on every highly computable $\Delta $ -regular forest if and only if it admits a Baire measurable solution on every Borel $\Delta $ -regular forest. We also show that if such a problem admits a computable solution on every computable maximum (...) degree $\Delta $ forest then it admits a continuous solution on every maximum degree $\Delta $ Borel graph with appropriate topological hypotheses, though the converse does not hold. (shrink)

We are concerned here with recursive function theory analogs of certain problems in chromatic graph theory. The motivating question for our work is: Does there exist a recursive (countably infinite) planar graph with no recursive 4-coloring? We obtain the following results: There is a 3-colorable, recursive planar graph which, for all k, has no recursive k-coloring; every decidable graph of genus p ≥ 0 has a recursive 2(χ(p) - 1)-coloring, where χ(p) is the (...) least number of colors which will suffice to color any graph of genus p; for every k ≥ 3 there is a k-colorable, decidable graph with no recursive k-coloring, and if k = 3 or if k = 4 and the 4-color conjecture fails the graph is planar; there are degree preserving correspondences between k-colorings of graphs and paths through special types of trees which yield information about the degrees of unsolvability of k-colorings of graphs. (shrink)

We investigate the Ramsey theory of continuous graph-structures on complete, separable metric spaces and apply the results to the problem of covering a plane by functions. Let the homogeneity number[Formula: see text] of a pair-coloring c:[X]2→2 be the number of c-homogeneous subsets of X needed to cover X. We isolate two continuous pair-colorings on the Cantor space 2ω, c min and c max, which satisfy [Formula: see text] and prove: Theorem. For every Polish space X and every continuous (...) pair-coloringc:[X]2→2with[Formula: see text], [Formula: see text] There is a model of set theory in which[Formula: see text]and[Formula: see text]. The consistency of [Formula: see text] and of [Formula: see text] follows from [20]. We prove that [Formula: see text] is equal to the covering number of 2 by graphs of Lipschitz functions and their reflections on the diagonal. An iteration of an optimal forcing notion associated to c min gives: Theorem. There is a model of set theory in which ℝ2 is coverable byℵ1graphs and reflections of graphs of continuous real functions; ℝ2 is not coverable byℵ1graphs and reflections of graphs of Lipschitz real functions. Figure 1.1 in the introduction summarizes the ZFC results in Part I of the paper. The independence results in Part II show that any two rows in Fig. 1.1 can be separated if one excludes [Formula: see text] from row. (shrink)

We develop and study the complexity of propositional proof systems of varying strength extending resolution by allowing it to operate with disjunctions of linear equations instead of clauses. We demonstrate polynomial-size refutations for hard tautologies like the pigeonhole principle, Tseitin graph tautologies and the clique-coloring tautologies in these proof systems. Using interpolation we establish an exponential-size lower bound on refutations in a certain, considerably strong, fragment of resolution over linear equations, as well as a general polynomial upper bound (...) on interpolants in this fragment.We then apply these results to extend and improve previous results on multilinear proofs , as studied in [Ran Raz, Iddo Tzameret, The strength of multilinear proofs. Comput. Complexity ]. Specifically, we show the following:• Proofs operating with depth-3 multilinear formulas polynomially simulate a certain, considerably strong, fragment of resolution over linear equations.• Proofs operating with depth-3 multilinear formulas admit polynomial-size refutations of the pigeonhole principle and Tseitin graph tautologies. The former improve over a previous result that established small multilinear proofs only for the functional pigeonhole principle. The latter are different from previous proofs, and apply to multilinear proofs of Tseitin mod p graph tautologies over any field of characteristic 0. We conclude by connecting resolution over linear equations with extensions of the cutting planes proof system. (shrink)

We explore a general method based on trees of elementary submodels in order to present highly simplified proofs to numerous results in infinite combinatorics. While countable elementary submodels have been employed in such settings already, we significantly broaden this framework by developing the corresponding technique for countably closed models of size continuum. The applications range from various theorems on paradoxical decompositions of the plane, to coloring sparse set systems, results on graph chromatic number and constructions from point-set topology. (...) Our main purpose is to demonstrate the ease and wide applicability of this method in a form accessible to anyone with a basic background in set theory and logic. (shrink)

We consider three problems concerning alpha conversion of closed terms (combinators). (1) Given a combinator M find the an alpha convert of M with a smallest number of distinct variables. (2) Given two alpha convertible combinators M and N find a shortest alpha conversion of M to N. (3) Given two alpha convertible combinators M and N find an alpha conversion of M to N which uses the smallest number of variables possible along the way. We obtain the following results. (...) (1) There is a polynomial time algorithm for solving problem (1). It is reducible to vertex coloring of chordal graphs. (2) Problem (2) is co-NP complete (in recognition form). The general feedback vertex set problem for digraphs is reducible to problem (2). (3) At most one variable besides those occurring in both M and N is necessary. This appears to be the folklore but the proof is not familiar. A polynomial time algorithm for the alpha conversion of M to N using at most one extra variable is given. There is a tradeoff between solutions to problem (2) and problem (3) which we do not fully understand. (shrink)

The problem of the existence of a universal structure omitting a finite set of forbidden substructures is reducible to the corresponding problem in the category of graphs with a vertex coloring by two colors. It is not known whether this problem reduces further to the category of ordinary graphs. It is also not known whether these problems are decidable.

The idea that an utterance of a basic (nondeviant) declarative sentence expresses a single true-or-false proposition has dominated philosophical discussions of meaning in this century. Refinements aside, this idea is less of a substantive theses than it is a background assumption against which particular theories of meaning are evaluated. But there are phenomena (noted by Frege, Strawson, and Grice) that threaten at least the completeness of classical theories of meaning, which associate with an utterance of a simple sentence a truth-condition, (...) a Russellian proposition, or a Fregean thought. And it may well be the case that a framework within which utterances express sequences of propositions provides much of what is needed to account for the relevant phenomena, a better overall picture of the way language works, and an enticingly uniform perspective on a variety of semantic problems. I do not myself take to theories that multiply propositions by appealing to propositions “presupposed” or to pairs of Fregean and Russellian propositions, or theories that show no respect for a distinction between semantics and pragmatics— where the former is the study of propositions whose general form and character is determined by word meaning and syntax—or for theories that blithely abandon general principles of composition and semantic innocence. I would like to sketch a package based on four interconnected ideas: (i) the meaning of an individual word is a sequence of instructions for generating a sequence of propositions (in conjunction with compositional instructions (syntax) and elements of context); (ii) utterances themselves are not bearers of truth or falsity; (iii) judgements of truth, falsity, commitment, and conflict are shaped, in part, by the weights attached to individual 1 propositions that occur in sequences expressed by utterances, weights that may be set (and reset) by contextual considerations; (iv) Fregean senses are superfluous; propositions might as well be Russellian (Mont Blanc and all its snow fields will do as well as any mode of presentation).. (shrink)

We introduce a framework for a graph-theoretic analysis of the semantic paradoxes. Similar frameworks have been recently developed for infinitary propositional languages by Cook and Rabern, Rabern, and Macauley. Our focus, however, will be on the language of first-order arithmetic augmented with a primitive truth predicate. Using Leitgeb’s notion of semantic dependence, we assign reference graphs (rfgs) to the sentences of this language and define a notion of paradoxicality in terms of acceptable decorations of rfgs with truth values. It (...) is shown that this notion of paradoxicality coincides with that of Kripke. In order to track down the structural components of an rfg that are responsible for paradoxicality, we show that any decoration can be obtained in a three-stage process: first, the rfg is unfolded into a tree, second, the tree is decorated with truth values (yielding a dependence tree in the sense of Yablo), and third, the decorated tree is re-collapsed onto the rfg. We show that paradoxicality enters the picture only at stage three. Due to this we can isolate two basic patterns necessary for paradoxicality. Moreover, we conjecture a solution to the characterization problem for dangerous rfgs that amounts to the claim that basically the Liar- and the Yablo graph are the only paradoxical rfgs. Furthermore, we develop signed rfgs that allow us to distinguish between ‘positive’ and ‘negative’ reference and obtain more fine-grained versions of our results for unsigned rfgs. (shrink)

Modeling mechanisms is central to the biological sciences – for purposes of explanation, prediction, extrapolation, and manipulation. A closer look at the philosophical literature reveals that mechanisms are predominantly modeled in a purely qualitative way. That is, mechanistic models are conceived of as representing how certain entities and activities are spatially and temporally organized so that they bring about the behavior of the mechanism in question. Although this adequately characterizes how mechanisms are represented in biology textbooks, contemporary biological research practice (...) shows the need for quantitative, probabilistic models of mechanisms, too. In this paper we argue that the formal framework of causal graph theory is well-suited to provide us with models of biological mechanisms that incorporate quantitative and probabilistic information. On the ba-sis of an example from contemporary biological practice, namely feedback regulation of fatty acid biosynthesis in Brassica napus, we show that causal graph theoretical models can account for feedback as well as for the multi-level character of mechanisms. However, we do not claim that causal graph theoretical representations of mechanisms are advantageous in all respects and should replace common qualitative models. Rather, we endorse the more balanced view that causal graph theoretical models of mechanisms are useful for some purposes, while being insufficient for others. (shrink)

It is consistent relative to an inaccessible cardinal that ZF+DC holds, and the hypergraph of isosceles triangles on $\mathbb {R}^2$ has countable chromatic number while the hypergraph of isosceles triangles on $\mathbb {R}^3$ has uncountable chromatic number.

I argue that Frege Problems in thought are best modeled using graph-theoretic machinery; and that these problems can arise even when subjects associate all the same qualitative properties to the object they’re thinking of twice. I compare the proposed treatment to similar ideas by Heck, Ninan, Recanati, Kamp and Asher, Fodor, and others.

The study of graph structure has advanced in recent years with great strides: finite graphs can be described algebraically, enabling them to be constructed out of more basic elements. Separately the properties of graphs can be studied in a logical language called monadic second-order logic. In this book, these two features of graph structure are brought together for the first time in a presentation that unifies and synthesizes research over the last 25 years. The author not only provides (...) a thorough description of the theory, but also details its applications, on the one hand to the construction of graph algorithms, and, on the other to the extension of formal language theory to finite graphs. Consequently the book will be of interest to graduate students and researchers in graph theory, finite model theory, formal language theory, and complexity theory. (shrink)

The paper is concerned with the existence of a universal graph at the successor of a strong limit singular μ of cofinality ℵ0. Starting from the assumption of the existence of a supercompact cardinal, a model is built in which for some such μ there are $\mu^{++}$ graphs on μ+ that taken jointly are universal for the graphs on μ+, while $2^{\mu^+} \gg \mu^{++}$ . The paper also addresses the general problem of obtaining a framework for consistency results at (...) the successor of a singular strong limit starting from the assumption that a supercompact cardinal κ exists. The result on the existence of universal graphs is obtained as a specific application of a more general method. (shrink)

The graph edit distance (GED) measures the dissimilarity between two graphs as the minimal cost of a sequence of elementary operations transforming one graph into another. This measure is fundamental in many areas such as structural pattern recognition or classification. However, exactly computing GED is NP-hard. Among different classes of heuristic algorithms that were proposed to compute approximate solutions, local search based algorithms provide the tightest upper bounds for GED. In this paper, we present K-REFINE and RANDPOST. K-REFINE (...) generalizes and improves an existing local search algorithm and performs particularly well on small graphs. RANDPOST is a general warm start framework that stochastically generates promising initial solutions to be used by any local search based GED algorithm. It is particularly efficient on large graphs. An extensive empirical evaluation demonstrates that both K-REFINE and RANDPOST perform excellently in practice. (shrink)

In this paper, we analyze and discuss Schopenhauer’s n-term diagrams for eristic dialectics from a graph-theoretical perspective. Unlike logic, eristic dialectics does not examine the validity of an isolated argument, but the progression and persuasiveness of an argument in the context of a dialogue or even controversy. To represent these dialogue situations, Schopenhauer created large maps with concepts and Euler-type diagrams, which from today’s perspective are a specific form of graphs. We first present the original method with Euler-type diagrams, (...) then give the most important graph-theoretical definitions, then discuss Schopenhauer’s diagrams graph-theoretically and finally give an example of how the graphs or diagrams can be used to analyze dialogues. (shrink)

Can you find an xy-equation that, when graphed, writes itself on the plane? This idea became internet-famous when a Wikipedia article on Tupper’s self-referential formula went viral in 2012. Under scrutiny, the question has two flaws: it is meaningless (it depends on fonts) and it is trivial. We fix these flaws by formalizing the problem.

Peirce considered the principal business of logic to be the analysis of reasoning. He argued that the diagrammatic system of Existential Graphs, which he had invented in 1896, carries the logical analysis of reasoning to the furthest point possible. The present paper investigates the analytic virtues of the Alpha part of the system, which corresponds to the sentential calculus. We examine Peirce’s proposal that the relation of illation is the primitive relation of logic and defend the view that this idea (...) constitutes the fundamental motive of philosophy of notation both in algebraic and graphical logic. We explain how in his algebras and graphs Peirce arrived at a unifying notation for logical constants that represent both truth-function and scope. Finally, we show that Shin’s argument for multiple readings of Alpha graphs is circular. (shrink)

We define a model for computing probabilities of right-nested conditionals in terms of graphs representing Markov chains. This is an extension of the model for simple conditionals from Wójtowicz and Wójtowicz. The model makes it possible to give a formal yet simple description of different interpretations of right-nested conditionals and to compute their probabilities in a mathematically rigorous way. In this study we focus on the problem of the probabilities of conditionals; we do not discuss questions concerning logical and metalogical (...) issues such as setting up an axiomatic framework, inference rules, defining semantics, proving completeness, soundness etc. Our theory is motivated by the possible-worlds approach ; however, our model is generally more flexible. In the paper we focus on right-nested conditionals, discussing them in detail. The graph model makes it possible to account in a unified way for both shallow and deep interpretations of right-nested conditionals. In particular, we discuss the status of the Import-Export Principle and PCCP. We briefly discuss some methodological constraints on admissible models and analyze our model with respect to them. The study also illustrates the general problem of finding formal explications of philosophically important notions and applying mathematical methods in analyzing philosophical issues. (shrink)

We describe Peirce’s 1903 system of modal gamma graphs, its transformation rules of inference, and the interpretation of the broken-cut modal operator. We show that Peirce proposed the normality rule in his gamma system. We then show how various normal modal logics arise from Peirce’s assumptions concerning the broken-cut notation. By developing an algebraic semantics we establish the completeness of fifteen modal logics of gamma graphs. We show that, besides logical necessity and possibility, Peirce proposed an epistemic interpretation of the (...) broken-cut modality, and that he was led to analyze constructions of knowledge in the style of epistemic logic. (shrink)

We show that there exist 2 ℵ 0 equational classes of Boolean algebras with operators that are not generated by the complex algebras of any first-order definable class of relational structures. Using a variant of this construction, we resolve a long-standing question of Fine, by exhibiting a bimodal logic that is valid in its canonical frames, but is not sound and complete for any first-order definable class of Kripke frames (a monomodal example can then be obtained using simulation results of (...) Thomason). The constructions use the result of Erd $\H{o}$ s that there are finite graphs with arbitrarily large chromatic number and girth. (shrink)

This paper introduces a class of graphical independence models that is closed under marginalization and conditioning but that contains all DAG independence models. This class of graphs, called maximal ancestral graphs, has two attractive features: there is at most one edge between each pair of vertices; every missing edge corresponds to an independence relation. These features lead to a simple parameterization of the corresponding set of distributions in the Gaussian case.

We argue that C. Darwin and more recently W. Hennig worked at times under the simplifying assumption of an eternal biosphere. So motivated, we explicitly consider the consequences which follow mathematically from this assumption, and the infinite graphs it leads to. This assumption admits certain clusters of organisms which have some ideal theoretical properties of species, shining some light onto the species problem. We prove a dualization of a law of T.A. Knight and C. Darwin, and sketch a decomposition result (...) involving the internodons of D. Kornet, J. Metz and H. Schellinx. A further goal of this paper is to respond to B. Sturmfels’ question, “Can biology lead to new theorems?”. (shrink)

It is a widespread assumption in philosophy of science that data is what is explained by theory—that data itself is not explanatory. I draw on instances of representational and explanatory practice from mammalian chronobiology to suggest that this assumption is unsustainable. In many instances, biologists employ representations of data in explanatory ways that are not reducible to constraints on or evidence for representations of mechanisms. Data graphs are used to exemplify relationships between quantities in the mechanism, and often these representations (...) are necessary for explaining particular aspects of the phenomena under study. I argue that this kind of representation is distinct from representing laws or generalizations, and its primary purpose is to convey particular types or patterns of quantitative relationships. The benefit of the analysis is two-fold. First, it provides a more accurate account of explanatory practice in broadly mechanistic analysis in biology. Second, it suggests that there is not an explanatory “fundamental” type of representation in biology. Rather, the practice of explanation consists in the construction of different types of representations and their employment for distinct explanatory purposes. (shrink)

The mathematical field of graph theory has recently been used to provide counterexamples to the Principle of the Identity of Indiscernibles. In response to this, it has been argued that appeal to relations between graphs allows the Principle to survive the counterexamples. In this paper, I aim to show why that proposal does not succeed.

Peirce and Frege both distinguished between the propositional content of an assertion and the assertion of a propositional content, but with different notational means. We present a modification of Peirce’s graphical method of logic that can be used to reason about assertions in a manner similar to Peirce’s original method. We propose a new system of Assertive Graphs, which unlike the tradition that follows Frege involves no ad hoc sign of assertion. We show that axioms of intuitionistic logic can be (...) derived from AGs, and argue that AGs analyse and represent assertions and illocutionary content in a way which is motivated both by its logical properties and its historical connection with the ideas that led to the development of the graphical method. (shrink)

This paper examines the contemporary philosophical and cognitive relevance of Charles Peirce's diagrammatic logic of existential graphs (EGs), the ‘moving pictures of thought’. The first part brings to the fore some hitherto unknown details about the reception of EGs in the early 1900s that took place amidst the emergence of modern conceptions of symbolic logic. In the second part, philosophical aspects of EGs and their contributions to contemporary logical theory are pointed out, including the relationship between iconic logic and images, (...) the problem of the meaning of logical constants, the cognitive economy of iconic logic, the failure of the Frege–Russell thesis, and the failure of the Language of Thought hypothesis. (shrink)