The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies––structured, controlled, vocabularies––are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the COVID-19 research domain, by following principles of the Open Biological and Biomedical Ontology (OBO) Foundry and by reusing existing ontologies such as the Infectious Disease Ontology (...) (IDO) Core, which provides terminological content common to investigations of all infectious diseases. We report here on the development of an IDO extension, the Virus Infectious Disease Ontology (VIDO), a reference ontology covering viral infectious diseases. We motivate term and definition choices, showcase reuse of terms from existing OBO ontologies, illustrate how ontological decisions were motivated by relevant life science research, and connect VIDO to the Coronavirus Infectious Disease Ontology (CIDO). We next use terms from these ontologies to annotate selections from life science research on SARS-CoV-2, highlighting how ontologies employing a common upper-level vocabulary may be seamlessly interwoven. Finally, we outline future work, including bacteria and fungus infectious disease reference ontologies currently under development, then cite uses of VIDO and CIDO in host-pathogen data analytics, electronic health record annotation, and ontology conflict-resolution projects. (shrink)

In this essay, I account for what we mean by old, what it means to grow old, and what we might mean by a shared achievement in the case of growing old together. I turn to the phenomenology of Alfred Schutz for some early insights on the shared time embodied in growing older together and how a ‘werelationship’ shored up by this temporal structure is the foundation for constituting the social world. I follow Schutz’s attempt to use this temporality to (...) describe the case of making music together and conclude that what Schutz calls growing older together is not the same as growing old together which is necessarily embodied in a way his account of making music together is not. I give an embodied, enactivist account of making music together as a performance and, drawing on recent work by Shaun Gallagher, offer an aesthetics of growing old together as a performance enacted by individuals whose intimate engagements in that performance accomplish the shared achievement of growing old together. (shrink)

Thinking with images -- Aesthetics without theory -- The Baroque and Bacon's popes -- Chance meeting with Duane Michals -- Étant donnés, Marcel Duchamp -- Le Mépris or Contempt, a film by Jean-Luc Godard.

Abstract.In recent issues of Zygon, numerous reflections have been published commenting on where the field of science‐and‐religion has been, where it presently stands, and where it should move in the future. These reflections touch on the importance of the dialogue and raise questions as to what audience the dialogue addresses and whom it should address. Some scholars see the dialogue as prospering, while others point out that much work needs to be done to make the dialogue more accessible to a (...) larger audience and more successful at tackling the provocative questions before us. Other academics view the questions themselves as needing further consideration and focus before answers to them can even be explored. In this article I provide a general overview of these essays by outlining some general categories of thought that seem to emerge from the contributors. I then present some of my own opinions concerning the future of the science‐religion field and emphasize that the dialogue, in addition to its traditional roles, must further the philosophical framework that can aid humanity in resolving the most pressing global concerns of our time. (shrink)

Abstract.In a previous issue of Zygon (Carvalho 2007), I explored the role of scientists—especially those engaging the science‐religion dialogue—within the arena of global equity health, world poverty, and human rights. I contended that experimental biologists, who might have reduced agency because of their professional workload or lack of individual resources, can still unite into collective forces with other scientists as well as human rights organizations, medical doctors, and political and civic leaders to foster progressive change in our world. In (...) this article, I present some recent findings from research on three emerging viruses—HIV, dengue, and rotavirus—to explore the factors that lead to the geographical expansion of these viruses and the increase in frequency of the infectious diseases they cause. I show how these viruses are generating problems for geopolitical stability, human rights, and equity health care for developing nations that are already experiencing a growing poverty crisis. I suggest some avenues of future research for the scientific community for the movement toward resolution of these problems and indicate where the science‐religion field can be of additional aid. (shrink)

John Carvalho’s Thinking with Images, an Enactivist Aesthetics argues that puzzling artworks can draw us into a special activity – thinking when we don’t know what to think – which is valuable because it takes us beyond our skills and understanding. Enactivism is the theory of mind that best explains such thinking. The book illustrates this proposal with four chapters that detail Carvalho’s highly personal or individual encounters with enigmatic works of art. I raise two concerns. First, (...) the four illustrative chapters say that they are enactivist, but they do not show this. The illustrative chapters detail considerations about the works that are not distinguished by a particular theory of mind and might fit with any number of approaches to works of art. The suggestion that the thinking presented in each chapter is skillful is not explained. Second, the book does not just focus on thinking when we don’t know what to think, it also claims that such thinking frees us from mere looking. But enactivism does not require us to deny that our engagement with particular works in their ‘concrete singularity,’ to use Carvalho’s term, is perceptual. If perception is richly integrated or even continuous with what we understand skillfully or cognitively – and enacted in one’s circumstances – this does not erase differences between perception and thought or between their functions. When we ‘think with’ an individual so that we are engaged with it in its concrete singularity, perception is involved either in the present or the past. There is no need to shunt perception or looking aside as life activities that are just rule-bound, just part of knowing what to think rather than part of our response when we don’t know what to think. (shrink)

Foucault’s late studies of classical Greek and Roman texts are significant for the attention they give to the nuances and complexities the authors of those texts attribute to the relations between men and boys. Foucault follows carefully the considerations the classical writers gave to the bodies, pleasures and knowledge that formed and were formed by these relations. His aim is not to capture what was said in these texts but to think with them about what it might have taken, lacking (...) any standard or model, for boys and men, both, to become, in the context of their relations with one another, beautiful examples of what it means to be alive. What interests him, ultimately, is not boys or the ancient pleasures associated with boys but this practice of making one’s life admirable, to oneself and to those with whom one associates freely and intimately, in the absence of a given standard or code. If there is a Foucauldean ethics, it can be nothing more or less than this becoming an admirable instance of a life worth living. (shrink)

It is generally held that the ancient Greeks had neither the language nor the political experience from which to draw a scientific account of authority. Alternatively it is argued that the Greeks experienced a variation of what we call the prerogative to rule, and that the ancient account of authority can be located in what Aristotle and others have said about ruling and being ruled. I demonstrate that authority does figure in the political lives of the ancient Greeks, that Aristotle (...) gives an account of it in his Politics, that Aristotle's account is markedly different from anything anyone has proposed in modern sciences of politics, and that it draws a picture which more adequately describes the way authority figures in our modern political experiences than the accounts that are typically given. I suggest that Michel Foucault's genealogical reading of the ancient Greek fashioning of ethical character as the subjection of desire to the various moderating regimens of political life makes the most of Aristotle's sciences of practical interaction. And I propose that by dropping the references to a purpose for politics external to the subjection of subjects to themselves, Foucault's philosophy describes the frame within which individuals now as then can fashion their lives as a whole work under the prevailing relations of authority/power. (shrink)

Review of Alva Noe's Varieties of Presence.

Abstract.In Islam, the acquisition of knowledge is a form of worship. But human achievement must be exercised in conformity with God's will. Warnings against feelings of superiority often are coupled with the command to remain within the confines of God's laws and limits. Because of the fear of arrogance and disregard of the balance created by God, any new knowledge or discovery must be applied with careful consideration to maintaining balance in the creation. Knowledge must be applied to ascertain equity (...) and justice for all of humanity. Research in Islam must be linked to the broad ethical base set forth in the Qur'an and the Sunnah. Whether embryonic stem cell research or cloning is ethically acceptable in Islam depends on the benefits derived from such applications. What is most important for the scholars is to adhere to the concepts of compassion, mercy, and benefit to everyone. (shrink)

Musical Concerns: Essays in Philosophy of Music JERROLD LEVINSONoup. 2015. pp. 192. £25.00.

Responding to serious environmental problems, requires urgent and fundamental shifts in our day-to-day lifestyles. This paper employs a qualitative, cross-cultural approach to explore people’s subjective self-reflections on their experiences of pro-environmental behavioral spillover in three countries; Brazil, China, and Denmark. Behavioral spillover is an appealing yet elusive phenomenon, but offers a potential way of encouraging wider, voluntary lifestyle shifts beyond the scope of single behavior change interventions. Behavioral spillover theory proposes that engaging in one pro-environmental action can catalyze the performance (...) of others. To date, evidence for the phenomenon has been mixed, and the causal processes governing relationships between behaviors appear complex, inconsistent and only partly understood. This paper addresses a gap in the literature by investigating accounts of behavioral spillover in three diverse cultural settings using qualitative semi-structured interviews. The analysis shows that while around half of participants overall who were questioned recalled spillover effects, the other half had not consciously experienced spillover. There were few significant differences across cultures, though some forms of spillover effects were reported more in some cultures than others. More environmentally-engaged participants across all three countries were significantly more likely to experience spillover than those who were less engaged. Accounts of within-domain spillovers were most commonly reported, mainly comprising waste, resource conservation and consumption-related actions. Accounts of between-domain spillover were very rare. Recollection of contextual and interpersonal spillover effects also emerged from the interviews. Our findings suggest that more conscious behavioral spillover pathways may be limited to those with pre-existing environmental values. Behavioral spillover may comprise multiple pathways incorporating conscious and unconscious processes. We conclude that targeting behavioral catalysts that generate more socially diffuse spillover effects could offer more potential than conventional spillover involving a single individual. (shrink)

Neste artigo, tratamos de um desafio lançado inicialmente por Derek Parfit contra a teoria da justiça de Rawls, que diz respeito ao problema da identidade pessoal e como isso pode se relacionar com os princípios distributivos da justiça. Acreditamos, como indicado por Paul Weithman, que tal problema desempenha um papel relevante na guinada política de Rawls – movimento pelo qual designamos as transformações em sua teoria do período de Uma Teoria da Justiça para o da publicação de Political Liberalism. O (...) próprio Weithman já forneceu uma análise acurada de como essa objeção, a qual daqui em diante nos referimos como a objeção do self parfitiano, minou a primeira tentativa de Rawls de mostrar como sua concepção de justiça seria estável. É provável, no entanto, que seja fácil perder o rumo desse debate, que foi de certa forma mediado por Samuel Scheffler. É por isso que fornecemos uma exposição cronológica desse debate na seção 1. Depois disso, na seção 2, reafirmamos o relato de Weithman de como o self parfitiano mina a estabilidade da concepção de justiça de Rawls em Uma Teoria da Justiça. Por fim, na seção 3, examinamos se essa dificuldade é devidamente tratada em Political Liberalism. Assim, sobretudo com este último passo, esperamos que esta abordagem possa acompanhar e complementar as contribuições anteriores de Weithman. (shrink)

In this paper, I defend an account of how perceptual experience can bear rational relation to our empirical thought. In the first part, I elaborate two claims that are central for the justificational role of perceptual experience, namely, the claim that perception and belief share the same kind of content, and the claim that perception is independent from belief. At first sight, these claims seem not to be compatible, since the first one seems to require the truth of content conceptualism, (...) while the second one seems to require its falsity. In the second part, based on Alva Noë's actionist theory of perception, I argue in favor of a less intellectualist interpretation of the first claim, uncommitted to content conceptualism, and then I show how it can be reconciled with the second claim. Finally, I explain how perception holds rational relationships with our empirical thought through the exercise of observational concepts. These concepts link what I propose to call 'space of actions' to the logical space of reasons. (shrink)