The COVID-19 pandemic prompted immense work on the investigation of the SARS-CoV-2 virus. Rapid, accurate, and consistent interpretation of generated data is thereby of fundamental concern. Ontologies––structured, controlled, vocabularies––are designed to support consistency of interpretation, and thereby to prevent the development of data silos. This paper describes how ontologies are serving this purpose in the COVID-19 research domain, by following principles of the Open Biological and Biomedical Ontology (OBO) Foundry and by reusing existing ontologies such as the Infectious Disease Ontology (...) (IDO) Core, which provides terminological content common to investigations of all infectious diseases. We report here on the development of an IDO extension, the Virus Infectious Disease Ontology (VIDO), a reference ontology covering viral infectious diseases. We motivate term and definition choices, showcase reuse of terms from existing OBO ontologies, illustrate how ontological decisions were motivated by relevant life science research, and connect VIDO to the Coronavirus Infectious Disease Ontology (CIDO). We next use terms from these ontologies to annotate selections from life science research on SARS-CoV-2, highlighting how ontologies employing a common upper-level vocabulary may be seamlessly interwoven. Finally, we outline future work, including bacteria and fungus infectious disease reference ontologies currently under development, then cite uses of VIDO and CIDO in host-pathogen data analytics, electronic health record annotation, and ontology conflict-resolution projects. (shrink)

We cannot simply observe that Emile Durkheim, Claude Lévi-Strauss, and Pierre Bourdieu all received philosophical training and subsequently asserted, in surprisingly similar terms, that escaping from philosophy or breaking away from philosophical modes of thought was a necessary condition for any research in the human and social sciences, without considering whether there might be a direct relationship between the sociological ethos and a particular attitude towards philosophy. The "rupture" with philosophyis never complete: the sociologists' conception of sociology is, on the (...) contrary, heavily influenced by the negative image they have of philosophy, which they always invoke as something to be avoided or a specter that must be exorcised. The sociological perception of philosophy thus constitutes a system of oppositions, a set of likes and dislikes deeply ingrained in the minds of practitioners in the human and social sciences, and which, so to speak, form the very foundation of the discipline and its definition of its identity. By reconstructing it, this article proposes a sociological analysis of the genesis, structure, and function of the sociological unconscious. (shrink)

This paper investigates the cultural significance of black holes and suns as metaphors in continental European literature and art, drawing on theoretical insights from French continental authors such as Jean-François Lyotard and Ray Brassier. Lyotard suggests that black holes signify the ultimate form of the sublime, representing the displacement of humanity and our unease with our place in the cosmos. On the other hand, Brassier views black holes as a consequence of the entropic dissolution of matter, reflecting physical reality's indifference (...) to subjective or teleological significance. The study also presents a curated collection of literary works and artworks that employ black holes and suns as metaphors, examining the emergence of these metaphorical objects and identifying discursive and epistemological shifts in society. Furthermore, this collaborative research project, involving the Pontifical Catholic University of São Paulo and the Federal Fluminense University in Brazil, and the Charles University in Prague in the Czech Republic, aims to provide a valuable resource for further academic inquiry. (shrink)

Este breve ensaio busca, por meio da análise estruturalista e distanciada indicada por Lévi-Strauss, aproximar o conjunto de funções literárias das relações presentes entre os personagens principais do mito de Orphéus e Eurydíkē, fundadores dos mistérios órficos da Antiguidade Clássica, e de Lot e sua esposa, apresentados no Livro de Gênesis. Os pontos correlacionados são: o ponto de partida da jornada de ambos os casais, a figura mítico-mágica que anuncia a saída, o olhar para trás da figura feminina e a (...) punição sobre elas exercida. (shrink)

This “essay” aims to think with Klossowski and Foucault the notions of “parody” and “fiction” based on the elegiac gesture presented by Veyne. From this, the “relational” possibility, and the “authors” quotation (notions reframed in the course of the text) will think and open up new possibilities for how to make philosophical historiography. Thus, postulated the death of God and the author's death, how would it break the Identity relations, leading to the end of the A = A relationship between (...) the textually constructed persons and the extra-textual historical ones? This is the question operated as the guideline for the mentioned notions mapping, aiming to deepen the gray area created by the elegiac fiction used here. (shrink)

The problems that arise from the presence of self-attacking ar- guments and odd-length cycles of attack within argumentation frameworks are widely recognized in the literature on defeasible argumentation. This paper introduces two simple semantics to capture different intuitions about what kinds of arguments should become justified in such scenarios. These semantics are modeled upon two extensions of argumentation frameworks, which we call sustainable and tolerant. Each one is constructed on the common ground of the powerful concept of admissibility introduced by (...) Dung in [10]. The novelty of this approach consists in viewing the admissibility of a subset of arguments as relative to potentially challenging subsets of arguments. Both sustainable and tolerant semantics are more credulous than preferred semantics (i.e. they justify at least the same arguments, and possibly more). Given certain sufficient conditions they coincide among them as well as with other semantics introduced by Dung. (shrink)

-- 2. La Gnoseología como filosofía de la ciencia (parte I, sección 2) ; Historia de la teoría de la ciencia (parte I, sección 3) -- 3. El Sistema de las doctrinas gnoseológicas ; Las cuatro familias básicas (parte II, sección 1) -- 4. El sistema de las doctrinas gnoseológicas ; Descripcionismo (parte II, sección 2) ; Teoreticismo (parte II, sección 3) -- 5. Adecuacionismo (parte II, sección 4) ; Circularismo (parte II, sección 5) ; Glosario.

This paper aims to perform a possible heuristic analysis of the film "The Exterminating Angel" (El Angel Exterminador) – produced in 1962 by the Hispanic Mexican director Luís Buñuel – through the platonic thought present in the books: "The Symposium" (Συμπόσιον), and "Republic" (Πολιτεία). It also presents an argument on the film's scriptural, artistic, and historical characteristics, such as some /intersections of its aesthetic movement, the Surrealism – specific correlations with Breton and Benjamin will also be made. Finally, the guiding (...) thread that will run through the entire research is the approximations between the above authors and Karl Marx's theory. (shrink)

Esta bibliograf a compila la extensa obra publicada de Leopoldo Zea: monograf as, cap tulos en libros, art culos period sticos y pr logos e introducciones. Incluye tambi n una bibliograf a sobre Zea.

> Tradução do Livro (colaboração com Maurício Pelegrini): Michel Foucault: Devir Do Pensamento E Multiplicação De Práticas (Editora Pontes, 2023) ||| o Capítulo (Inglês – Português): Foucault e a genealogia do saber moderno sobre a sexualidade: De São Paulo às Confissões da Carne | Autor: Daniele Lorenzini ||| Capítulo (Inglês – Português): Os Sujeitos do Capitalismo: De Marx a Foucault | Autor: Johana Oksala ||| o Capítulo (Inglês – Português): A práxis filosófica de Michel Foucault: Sobre o devir da crítica (...) e da prática | Autor: Bernard E. Harcourt ||| o Capítulo (Espanhol – Português): Da biopolítica às declinações do Bios: Deslocamentos e continuidades do projeto filosófico foucaultiano | Autor: Christina López ||| o Capítulo (Francês – Português): Foucault, o neoliberalismo e o desejo de revolução | Autor: Christian Laval ||| o Capítulo (Francês – Português): Foucault e a mitologia antineoliberal | Autor: Philippe Sabot . (shrink)

En el presente trabajo caracterizo operativamente el pensar temprano de Heidegger como una “filosofía de la intersubjetividad”. Esto me permite habilitar un contraste de su aporte frente a lo que define como “metafísica de la subjetividad”: se trata de un horizonte filosófico que Heidegger critica, y que en este trabajo reconstruyo prestando especial atención a la fenomenología de Husserl. Este cotejo puede llevarse a cabo circunscribiendo el programa ontológico-hermenéutico de _Ser y tiempo_ a los términos del estudio preparatorio que antecede (...) a la pregunta por el ser, y de comprenderlo como una analítica de la coexistencia. (shrink)

In _Metaphysics_ A.4, Aristotle provides crucial information about fundamental aspects of the chemistry and microphysics of the atomic theory of Leucippus and Democritus of Abdera. Besides the plenum and the void, which he identifies as the elements of the atomic theory, he presents what he himself names as _differences_. These fundamental differences are named so because they ought to be responsible for the emergence of all other differences in the physical world, and especially the ones that hit our senses. Aristotle (...) provides a list of three differences both in what is recognized as autochthonous terminology from Leucippus and Democritus, and in a translation to terms apparently more intelligible to Aristotelian listeners. Among those differences there is one in particular that is harder to comprehend than the other ones: _rhysmos_. Aristotle’s translation of _rhysmos_ into _sch__ēma_ has led most interpreters to acknowledge that it referred solely to atoms individually, while the other two differences would refer to relations between atoms. In this paper, I want to propose an interpretation in which _rhysmos_ actually refers to several aspects of the chemistry and microphysics of the atomic theory. (shrink)

The idea of a moving present or ‘now’ seems to form part of our most basic beliefs about reality. Such a present, however, is not reflected in any of our theories of the physical world. I show in this article that presentism, the doctrine that only what is present exists, is in conflict with modern relativistic cosmology and recent advances in neurosciences. I argue for a tenseless view of time, where what we call ‘the present’ is just an emergent secondary (...) quality arising from the interaction of perceiving self-conscious individuals with their environment. I maintain that there is no flow of time, but just an ordered system of events. (shrink)

Conceptual engineering is commonly characterized as the method for assessing and improving our representational devices. Little has been said, however, on how best to construe these representational devices—in other words, on what conceptual engineering should be all about. This paper tackles this problem with a basic strategy: First, by presenting a taxonomy of the different possible subject matters for conceptual engineering; then, by comparatively assessing them and selecting the most conducive one with a view to making conceptual engineering an actionable (...) method, that is, a method that can be applied effectively and consistently to specific case studies. The outcome is that conceptual engineering should be all about concepts on pain of pragmatic inconsistencies otherwise. (shrink)

This paper discusses the logical space of alternative conceptual engineering projects, with a specific focus on (1) the processes, (2) the targets and goals, and (3) the methods of such projects. We present an overview of how these three aspects interact in the contemporary literature and discuss those alternative projects that have yet to be explored based on our suggested typology. We show how choices about each element in a conceptual engineering project constrain the possibilities for the others, thereby giving (...) rise to distinct groupings of possible projects under the banner of conceptual engineering. We conclude with a critical reflection on the potential ethical issues that arise as a result of effectively putting conceptual engineering into practice. (shrink)

The present article is the third part of a trilogy of papers, devoted to analysing the influence of semantic Platonism on contemporary philosophy of language. In Part I (Picazo 2021), the discussion was set out by examining a number of typical traces of Platonism in semantic theory since Frege. In Part II (Picazo 2021a), additional illustrations of such traces were provided, taken from a collection of recent commissioned essays on the philosophy of language (Schantz 2012). The present part is devoted (...) to providing yet additional illustrations of such traces, taken from a collection of classic essays on the subject: the book Modern Philosophy of Language, edited by Maria Baghramian in 1998. We shall, thus, describe a number of examples in which the influence of semantic Platonism on these essays can be felt. Prominent among these examples are the confusion between sentences and propositions (and related confusions), the avoidant attitude with respect to basic aspects of linguistic meaning, the overuse of analytic methodology for semantic research, the adoption of a background Platonic metaphysics of meanings and the overreaction against semantic Platonism and germane views, witnessing an inverse influence (‘by opposition’) from these views. (shrink)

Presentism is, roughly, the metaphysical doctrine that maintains that whatever exists, exists in the present. The compatibility of presentism with the theories of special and general relativity was much debated in recent years. It has been argued that at least some versions of presentism are consistent with time-orientable models of general relativity. In this paper we confront the thesis of presentism with relativistic physics, in the strong gravitational limit where black holes are formed. We conclude that the presentist position is (...) at odds with the existence of black holes and other compact objects in the universe. A revision of the thesis is necessary, if it is intended to be consistent with the current scientific view of the universe. (shrink)

The starting point of this paper is the idea that linguistic representation is the result of a global process: a process of interaction of a community of cognitive-linguistic agents, with one another and with the environment. I maintain that the study of truth, meaning and related notions should be addressed without losing perspective of this process, and I oppose the ‘static’ or ‘analytic’ approach, which is fundamentally based on our own knowledge of the conventional meaning of words and sentences, and (...) the ability of using them that we have as competent speakers. I argue that the analytic perspective is responsible for five recurring difficulties in truthmaker theory: (1) the lack of attention to the difference of explanatory role between the distinct notions proposed as primary truthbearer; (2) the adscription of purely extra-linguistic truthmakers to ‘synthetic truths’, ignoring the contribution of the linguistic factor; (3) the adscription of purely linguistic truthmakers to ‘logical’ and ‘analytic truths’, ignoring the contribution of the worldly factor; (4) the difficulties in the search for minimal truthmakers; (5) the problems in the treatment of ‘negative facts’ and of other ‘logically complex facts’. I do not provide an account of how to solve these difficulties, but I do show how the ‘process model’ helps to clear up confusion regarding them. (shrink)

I present a discussion of some issues in the ontology of spacetime. After a characterisation of the controversies among relationists, substantivalists, eternalists, and presentists, I offer a new argument for rejecting presentism, the doctrine that only present objects exist. Then, I outline and defend a form of spacetime realism that I call event substantivalism. I propose an ontological theory for the emergence of spacetime from more basic entities. Finally, I argue that a relational theory of pre-geometric entities can give rise (...) to substantival spacetime in such a way that relationism and substantivalism are not necessarily opposed positions, but rather complementary. In an appendix I give axiomatic formulations of my ontological views. (shrink)

The present article is the first of a trilogy of papers, devoted to analysing the influence of semantic Platonism on contemporary philosophy of language. In the present article, I lay out the discussion by contrasting semantic Platonism with two other views of linguistic meaning: the socio-environmental conception of meaning and semantic anti-representationalism. Then, I identify six points in which the impregnation of semantic theory with Platonism can be particularly felt, resulting in shortcomings and inaccuracies of various kinds. These points are (...) the following: the limitations of regarding logico-philosophical analysis as the only working methodology; the tendency to avoid investigating a number of aspects of linguistic meaning; the recurring confusion between sentences, statements, and propositions; the weakness of transcendent assumptions about meaning; the weakness of meaning assumptions adopted on the basis of pure intuition; and inconsistencies caused by some over-eager attempts to escape semantic Platonism. (shrink)

This textbook presents the basics of philosophy that are necessary for the student and researcher in science in order to better understand scientific work. The approach is not historical but formative: tools for semantical analysis, ontology of science, epistemology, and scientific ethics are presented in a formal and direct way. The book has two parts: one with the general theory and a second part with application to some problems such as the interpretation of quantum mechanics, the nature of mathematics, and (...) the ontology of spacetime. The book addresses questions such as "What is meaning?", "What is truth?", "What are truth criteria in science?", "What is a theory?", "What is a model?" "What is a datum?", "What is information?", "What does it mean to understand something?", "What is space?", "What is time?", "How are these concepts articulated in science?" "What are values?" "What are the limits of science?", and many more. The philosophical views presented are "scientific" in the sense that they are informed by current science, they are relevant for scientific research, and the method adopted uses the hypothetical-deductive approach that is characteristic of science. The results and conclusions, as any scientific conclusion, are open to revision in the light of future advances. Hence, this philosophical approach opposes to dogmatic philosophy. Supported by end-of-chapter summaries and a list of special symbols used, the material will be of interest for students and researchers in both science and philosophy. The second part will appeal to physicists and mathematicians. (shrink)

Dung’s argumentation frameworks are formalisms widely used to model interaction among arguments. Although their study has been profusely developed in the field of Artificial Intelligence, it is not common to see its treatment among those less connected to computer science within the logical-philosophical community. In this paper we propose to bring to that audience a proof-theory for argument justification based on tableaux, very similar to those the Logic students are familiar with. The tableaux enable to calculate whether an argument or (...) subset of arguments are accepted or rejected in accordance to Dung’s preferred and grounded extension-based semantics. Soundness and completeness results regarding those semantics are provided. (shrink)