Results for 'J. Demongeot'

961 found
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  1.  45
    Mathematical methods for inferring regulatory networks interactions: Application to genetic regulation.J. Aracena & J. Demongeot - 2004 - Acta Biotheoretica 52 (4):391-400.
    This paper deals with the problem of reconstruction of the intergenic interaction graph from the raw data of genetic co-expression coming with new technologies of bio-arrays (DMA-arrays, protein-arrays, etc.). These new imaging devices in general only give information about the asymptotical part (fixed configurations of co-expression or limit cycles of such configurations) of the dynamical evolution of the regulatory networks (genetic and/or proteic) underlying the functioning of living systems. Extracting the casual structure and interaction coefficients of a gene interaction network (...)
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  2.  25
    Demography and Diffusion in Epidemics: Malaria and Black Death Spread.J. Gaudart, M. Ghassani, J. Mintsa, M. Rachdi, J. Waku & J. Demongeot - 2010 - Acta Biotheoretica 58 (2-3):277-305.
    The classical models of epidemics dynamics by Ross and McKendrick have to be revisited in order to incorporate elements coming from the demography (fecundity, mortality and migration) both of host and vector populations and from the diffusion and mutation of infectious agents. The classical approach is indeed dealing with populations supposed to be constant during the epidemic wave, but the presently observed pandemics show duration of their spread during years imposing to take into account the host and vector population changes (...)
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  3.  31
    Stability, Complexity and Robustness in Population Dynamics.J. Demongeot, H. Hazgui, H. Ben Amor & J. Waku - 2014 - Acta Biotheoretica 62 (3):243-284.
    The problem of stability in population dynamics concerns many domains of application in demography, biology, mechanics and mathematics. The problem is highly generic and independent of the population considered (human, animals, molecules,…). We give in this paper some examples of population dynamics concerning nucleic acids interacting through direct nucleic binding with small or cyclic RNAs acting on mRNAs or tRNAs as translation factors or through protein complexes expressed by genes and linked to DNA as transcription factors. The networks made of (...)
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  4.  17
    Random Modelling of Contagious Diseases.J. Demongeot, O. Hansen, H. Hessami, A. S. Jannot & J. Mintsa - 2013 - Acta Biotheoretica 61 (1):141-172.
    Modelling contagious diseases needs to include a mechanistic knowledge about contacts between hosts and pathogens as specific as possible, e.g., by incorporating in the model information about social networks through which the disease spreads. The unknown part concerning the contact mechanism can be modelled using a stochastic approach. For that purpose, we revisit SIR models by introducing first a microscopic stochastic version of the contacts between individuals of different populations (namely Susceptible, Infective and Recovering), then by adding a random perturbation (...)
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  5.  34
    Random simulation and confiners: Their application to neural networks.J. Demongeot, D. Benaouda, O. Nérot & C. Jézéquel - 1994 - Acta Biotheoretica 42 (2-3):203-213.
    Random simulation of complex dynamical systems is generally used in order to obtain information about their asymptotic behaviour (i.e., when time or size of the system tends towards infinity). A fortunate and welcome circumstance in most of the systems studied by physicists, biologists, and economists is the existence of an invariant measure in the state space allowing determination of the frequency with which observation of asymptotic states is possible. Regions found between contour lines of the surface density of this invariant (...)
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  6.  6
    MitomiRs, ChloromiRs and Modelling of the microRNA Inhibition.J. Demongeot, H. Hazgui, S. Bandiera, O. Cohen & A. Henrion-Caude - 2013 - Acta Biotheoretica 61 (3):367-383.
    MicroRNAs are non-coding parts of nuclear and mitochondrial genomes, preventing the weakest part of the genetic regulatory networks from being expressed and preventing the appearance of a too many attractors in these networks. They have also a great influence on the chromatin clock, which ensures the updating of the genetic regulatory networks. The post-transcriptional inhibitory activity by the microRNAs, which is partly unspecific, is due firstly to their possibly direct negative action during translation by hybridizing tRNAs, especially those inside the (...)
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  7.  6
    The Poitiers School of Mathematical and Theoretical Biology: Besson–Gavaudan–Schützenberger’s Conjectures on Genetic Code and RNA Structures.J. Demongeot & H. Hazgui - 2016 - Acta Biotheoretica 64 (4):403-426.
    The French school of theoretical biology has been mainly initiated in Poitiers during the sixties by scientists like J. Besson, G. Bouligand, P. Gavaudan, M. P. Schützenberger and R. Thom, launching many new research domains on the fractal dimension, the combinatorial properties of the genetic code and related amino-acids as well as on the genetic regulation of the biological processes. Presently, the biological science knows that RNA molecules are often involved in the regulation of complex genetic networks as effectors, e.g., (...)
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  8.  18
    Announcement.J. Demongeot - 1988 - Acta Biotheoretica 37 (3-4):103-103.
  9.  14
    Wound Healing and Scale Modelling in Zebrafish.V. Volpert, D. Dhouailly, J. Demongeot, N. Bessonov & F. Caraguel - 2016 - Acta Biotheoretica 64 (4):343-358.
    We propose to study the wound healing in Zebrafish by using firstly a differential approach for modelling morphogens diffusion and cell chemotactic motion, and secondly a hybrid model of tissue regeneration, where cells are considered as individual objects and molecular concentrations are described by partial differential equations.
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  10.  19
    Discrete Mesh Approach in Morphogenesis Modelling: the Example of Gastrulation.E. Promayon, A. Lontos & J. Demongeot - 2016 - Acta Biotheoretica 64 (4):427-446.
    Morphogenesis is a general concept in biology including all the processes which generate tissue shapes and cellular organizations in a living organism. Many hybrid formalizations have been proposed for modelling morphogenesis in embryonic or adult animals, like gastrulation. We propose first to study the ventral furrow invagination as the initial step of gastrulation, early stage of embryogenesis. We focus on the study of the connection between the apical constriction of the ventral cells and the initiation of the invagination. For that, (...)
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  11.  51
    Predictive Power of “A Minima” Models in Biology.L. Almeida & J. Demongeot - 2012 - Acta Biotheoretica 60 (1-2):3-19.
    Many apparently complex mechanisms in biology, especially in embryology and molecular biology, can be explained easily by reasoning at the level of the “efficient cause” of the observed phenomenology: the mechanism can then be explained by a simple geometrical argument or a variational principle, leading to the solution of an optimization problem, for example, via the co-existence of a minimization and a maximization problem . Passing from a microscopic level to the macroscopic level often involves an averaging effect that gives (...)
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  12.  80
    Robustness in Regulatory Networks: A Multi-Disciplinary Approach.Jacques Demongeot, Adrien Elena & Sylvain Sené - 2008 - Acta Biotheoretica 56 (1-2):27-49.
    We give in this paper indications about the dynamical impact coming from the main sources of perturbation in biological regulatory networks. First, we define the boundary of the interaction graph expressing the regulations between the main elements of the network . Then, we search what changes in the state values on the boundary could cause some changes of states in the core of the system . After, we analyse the role of the mode of updating on the asymptotics of the (...)
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  13.  24
    The Uroboros Theory of Life’s Origin: 22-Nucleotide Theoretical Minimal RNA Rings Reflect Evolution of Genetic Code and tRNA-rRNA Translation Machineries.Jacques Demongeot & Hervé Seligmann - 2019 - Acta Biotheoretica 67 (4):273-297.
    Theoretical minimal RNA rings attempt to mimick life’s primitive RNAs. At most 25 22-nucleotide-long RNA rings code once for each biotic amino acid, a start and a stop codon and form a stem-loop hairpin, resembling consensus tRNAs. We calculated, for each RNA ring’s 22 potential splicing positions, similarities of predicted secondary structures with tRNA vs. rRNA secondary structures. Assuming rRNAs partly derived from tRNA accretions, we predict positive associations between relative secondary structure similarities with rRNAs over tRNAs and genetic code (...)
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  14.  14
    Why Is AUG the Start Codon?Jacques Demongeot & Hervé Seligmann - 2020 - Bioessays 42 (6):1900201.
    The rational design of theoretical minimal RNA rings predetermines AUG as the universal start codon. This design maximizes coded amino acid diversity over minimal sequence length, defining in silico theoretical minimal RNA rings, candidate ancestral genes. RNA rings code for 21 amino acids and a stop codon after three consecutive translation rounds, and form a degradation‐delaying stem‐loop hairpin. Twenty‐five RNA rings match these constraints, ten start with the universal initiation codon AUG. No first codon bias exists among remaining RNA rings. (...)
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  15. Publicity and Common Commitment to Believe.J. R. G. Williams - 2021 - Erkenntnis 88 (3):1059-1080.
    Information can be public among a group. Whether or not information is public matters, for example, for accounts of interdependent rational choice, of communication, and of joint intention. A standard analysis of public information identifies it with (some variant of) common belief. The latter notion is stipulatively defined as an infinite conjunction: for p to be commonly believed is for it to believed by all members of a group, for all members to believe that all members believe it, and so (...)
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  16. El mejor régimen político según santo Tomás.Marcel Demongeot - 1937 - Buenos Aires,: Librería Santa Catalina.
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  17.  32
    The Isochronal Fibration: Characterization and Implication in Biology.Jacques Demongeot - 2010 - Acta Biotheoretica 58 (2-3):121-142.
    Limit cycles, because they are constituted of a periodic succession of states (discrete or continuous) constitute a good manner to store information. From any points of the state space reached after a perturbation or stimulation of the cognitive system storing this information, one can aim to join through a more or less long return trajectory a precise neighbourhood of the asymptotic trajectory at a specific moment (or a specific place) on the limit cycle, i.e. where the information of interest stands. (...)
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  18. Objectual understanding, factivity and belief.J. Adam Carter & Emma C. Gordon - 2016 - In Martin Grajner & Pedro Schmechtig (eds.), Epistemic Reasons, Norms and Goals. Boston: De Gruyter. pp. 423-442.
    Should we regard Jennifer Lackey’s ‘Creationist Teacher’ as understanding evolution, even though she does not, given her religious convictions, believe its central claims? We think this question raises a range of important and unexplored questions about the relationship between understanding, factivity and belief. Our aim will be to diagnose this case in a principled way, and in doing so, to make some progress toward appreciating what objectual understanding—i.e., understanding a subject matter or body of information—demands of us. Here is the (...)
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  19.  40
    Biological boundaries and biological age.Jacques Demongeot - 2009 - Acta Biotheoretica 57 (4):397-418.
    The chronologic age classically used in demography is often unable to give useful information about which exact stage in development or aging processes has reached an organism. Hence, we propose here to explain in some applications for what reason the chronologic age fails in explaining totally the observed state of an organism, which leads to propose a new notion, the biological age. This biological age is essentially determined by the number of divisions before the Hayflick’s limit the tissue or mitochondrion (...)
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  20.  33
    Evolution and RNA Relics. A Systems Biology View.Jacques Demongeot, Nicolas Glade & Andrés Moreira - 2008 - Acta Biotheoretica 56 (1-2):5-25.
    The genetic code has evolved from its initial non-degenerate wobble version until reaching its present state of degeneracy. By using the stereochemical hypothesis, we revisit the problem of codon assignations to the synonymy classes of amino-acids. We obtain these classes with a simple classifier based on physico-chemical properties of nucleic bases, like hydrophobicity and molecular weight. Then we propose simple RNA ring structures that present, overlap included, one and only one codon by synonymy class as solutions of a combinatory variational (...)
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  21.  19
    Compact set valued flows: Applications in biological modelling.Jacques Demongeot, Paul Kulesal & James Muffay - 1996 - Acta Biotheoretica 44 (3-4):349-358.
    Compact set valued iterations generalize classical point iterations quite naturally by replacing the function f with a tube f in the discrete iterations equation. In Section 3, some bifurcation results about logistic tube iterations are given. In Section 4, an analogous dynamical behaviour for the phase response tube involved in the entrainment of the respiratory rhythm is studied.
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  22.  10
    Negative CG dinucleotide bias: An explanation based on feedback loops between Arginine codon assignments and theoretical minimal RNA rings.Jacques Demongeot, Andrés Moreira & Hervé Seligmann - 2021 - Bioessays 43 (3):2000071.
    Theoretical minimal RNA rings are candidate primordial genes evolved for non‐redundant coding of the genetic code's 22 coding signals (one codon per biogenic amino acid, a start and a stop codon) over the shortest possible length: 29520 22‐nucleotide‐long RNA rings solve this min‐max constraint. Numerous RNA ring properties are reminiscent of natural genes. Here we present analyses showing that all RNA rings lack dinucleotide CG (a mutable, chemically instable dinucleotide coding for Arginine), bearing a resemblance to known CG‐depleted genomes. CG (...)
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  23.  43
    Functions of Thought and the Synthesis of Intuitions.J. Michael Young - 1992 - In Paul Guyer (ed.), The Cambridge companion to Kant. New York: Cambridge University Press. pp. 3--101.
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  24.  49
    The Place of Protagoras in Athenian Public Life (460–415 B.C.).J. S. Morrison - 1941 - Classical Quarterly 35 (1-2):1-.
    Protagoras, of all the ancient philosophers, has perhaps attracted the most interest in modern times. His saying ‘Man is the measure of all things’ caused Schiller to adopt him as the patron of the Oxford pragmatists, and has generally earned him the title of the first humanist. Yet the exact delineation of his philosophcal position remains a baffling task. Neumann, writing on Die Problematik des ‘Homo-mensura’ Satzes in 1938,2 concludes that no certainty whatever can be reached on the meaning of (...)
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  25.  49
    A General Formalism for Tissue Morphogenesis Based on Cellular Dynamics and Control System Interactions.Loïc Forest & Jacques Demongeot - 2008 - Acta Biotheoretica 56 (1):51-74.
    Morphogenesis is a key process in developmental biology. An important issue is the understanding of the generation of shape and cellular organisation in tissues. Despite of their great diversity, morphogenetic processes share common features. This work is an attempt to describe this diversity using the same formalism based on a cellular description. Tissue is seen as a multi-cellular system whose behaviour is the result of all constitutive cells dynamics. Morphogenesis is then considered as a spatiotemporal organization of cells activities. We (...)
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  26.  32
    Numerical simulations of microtubule self-organisation by reaction and diffusion.Nicolas Glade, Jacques Demongeot & James Tabony - 2002 - Acta Biotheoretica 50 (4):239-268.
    This article addresses the physical chemical processes underlying biological self-organisation by which a homogenous solution of reacting chemicals spontaneously self-organises. Theoreticians have predicted that self-organisation can arise from a coupling of reactive processes with molecular diffusion. In addition, the presence of an external field, such as gravity, at a critical moment early in the process may determine the morphology that subsequently develops. The formation, in-vitro, of microtubules, a constituent of the cellular skeleton, shows this type of behaviour. The preparations spontaneously (...)
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  27.  10
    9. From “I” to “We”: Acts of Agency in Simone de Beauvoir’s Philosophical Autobiography.J. Lenore Wright - 2015 - In Christopher Cowley (ed.), The Philosophy of Autobiography. University of Chicago Press. pp. 193-216.
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  28. Indian logic.J. N. Mohanty S. R. Saha, Amita Chatterjee Tushar Kanti Sarkar & Bhattacharyya Sibajiban - 2011 - In Leila Haaparanta (ed.), The development of modern logic. New York: Oxford University Press.
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  29. Free will, praise and blame.J. J. C. Smart - 1961 - Mind 70 (279):291-306.
    In this article I try to refute the so-called "libertarian" theory of free will, and to examine how our conclusion ought to modify our common attitudes of praise and blame. In attacking the libertarian view, I shall try to show that it cannot be consistently stated. That is, my dscussion will be an "analytic-philosophic" one. I shall neglect what I think is in practice an equally powerful method of attack on the libertarian: a challenge to state his theory in such (...)
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  30. SL (6p) and Multicomponent Momenta.J. Wess - 1965 - In Karl W. Linsenmann (ed.), Proceedings. St. Louis, Lutheran Academy for Scholarship. pp. 216.
     
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  31.  3
    Living beyond the one and the many: silent-mind transcendence of all traditional and contemporary monism and dualism.J. Richard Wingerter - 2011 - Lanham, Maryland: Hamilton Books.
    Living out of silence, out of a fully functioning, lovingly attentive mind, and not just out of thought, out of a partially functioning mind, is requisite for depth or profundity in living or relating. A fully attentive, truly silent or meditative mind sees that there is real dualism of time and the timeless and that time and the timeless each has its own unique value. The timeless, or real silence, that which alone can make for depth in one's living and (...)
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  32. pt. 3. Practical application: Practical experience with deathbringers.J. Michael Wood - 2011 - In Livia Kohn (ed.), Living authentically: Daoist contributions to modern psychology. Dunedin, FL: Three Pines Press.
  33. A Theory of Metaphysical Indeterminacy.Elizabeth Barnes & J. Robert G. Williams - 2011 - In Karen Bennett & Dean W. Zimmerman (eds.), Oxford Studies in Metaphysics Volume 6. Oxford University Press UK. pp. 103-148.
    If the world itself is metaphysically indeterminate in a specified respect, what follows? In this paper, we develop a theory of metaphysical indeterminacy answering this question.
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  34. Detection of self: The perfect algorithm.J. S. Watson - 1994 - In S. T. Parker, R. Mitchell & M. L. Boccia (eds.), Self-Awareness in Animals and Humans: Developmental Perspectives. Cambridge University Press.
  35.  1
    Communicating with the dying.J. Michael Wilson - 1975 - Journal of Medical Ethics 1 (1):18-21.
    Telling a patient that the outcome of his illness is not good, or even hopeless, requires sensitivity and the ability to communicate with him in the setting of a hospital which is an unnatural environment divorced from family and friends. It is a task which must be taught and learned by doctors and nurses.
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  36.  4
    Soft-Finished Textiles In Roman Britain.J. P. Wild - 1967 - Classical Quarterly 17 (1):133-135.
    The achievements of the textile industry in Roman Britain are often underestimated as a result of the meagreness of our available evidence. The Edict on maximum prices issued by Diocletian in A.D. 301 shows that British capes commanded high prices on the markets of the Empire, and that in the late third century A.D. British rugs were the best in the world. In view of the competition from the traditional centres of rug manufacture in the East, this is an astonishing (...)
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  37.  2
    The Textile Term Scutulatus.J. P. Wild - 1964 - Classical Quarterly 14 (2):263-266.
    The received translation and interpretation of many of the technical terms current in the textile industry of the Roman Empire are inaccurate, because lexicographers have either fought shy of being precise, or have thought that they recognized in the ancient world technical processes which originated at a much later date. The evidence is often equivocal or insufficient, but may still yield details that have been overlooked. The textile expression scutulatus, to take an example, deserves more attention than Blümner has devoted (...)
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  38. Granule-based models.J. Yen & L. Wang - 1998 - In Enrique H. Ruspini, Piero Patrone Bonissone & Witold Pedrycz (eds.), Handbook of fuzzy computation. Philadelphia: Institute of Physics.
     
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  39. Does shading affect size illusions in simple line drawings?J. M. Zanker & Aajk Abdullah - 2004 - In Robert Schwartz (ed.), Perception. Malden Ma: Blackwell. pp. 179-179.
     
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  40. Die Zeit als ein naturwissenschaftliches und heuristisches Problem.J. Zeman - 1987 - In Jiří Zeman (ed.), Philosophische Probleme der Zeit: Beiträge aus der Konferenz in Zwettl 1986. Praha: Institut für Philosophie und Soziologie der Tsch. Akademie der Wissenschaften.
     
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  41. Event-related fMRI during saccadic gap and overlap paradigms: Neural correlates of express saccades.J. Özyurt, R. M. Rutschmann, I. Vallines & M. W. Greenlee - 2004 - In Robert Schwartz (ed.), Perception. Malden Ma: Blackwell. pp. 4-4.
     
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  42.  49
    Passage of time judgements.J. H. Wearden - 2015 - Consciousness and Cognition 38 (C):165-171.
  43. Time and death: Heidegger's analysis of finitude.Carol J. White - 2005 - Burlington, VT: Ashgate. Edited by Mark Ralkowski.
    The existential analysis -- The death of dasein -- The timeliness of dasein -- The derivation of time -- The time of being.
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  44. Extreme and restricted utilitarianism.J. J. C. Smart - 1956 - Philosophical Quarterly 6 (25):344-354.
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  45.  40
    Is Health the Absence of Disease?Somogy Varga & Andrew J. Latham - forthcoming - Inquiry: An Interdisciplinary Journal of Philosophy.
    While philosophical questions about health and disease have attracted much attention in recent decades, and while opinions are divided on most issues, influential accounts seem to embrace negativism about health, according to which health is the absence of disease. Some subscribe to unrestricted negativism, which claims that negativism applies not only to the concepts of health and disease as used by healthcare professionals but also to the lay concept that underpins everyday thinking. Whether people conceptualize health in this manner has (...)
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  46. Kant against the cult of genius: epistemic and moral considerations.Jessica J. Williams - 2021 - In Camilla Serck-Hanssen & Beatrix Himmelmann (eds.), Proceedings of the 13th International Kant Congress: The Court of Reason. Berlin: De Gruyter. pp. 919-926.
    In the Critique of Judgment, Kant claims that genius is a talent for art, but not for science. Despite his restriction of genius to the domain of fine art, several recent interpreters have suggested that genius has a role to play in Kant’s account of cognition in general and scientific practice in particular. In this paper, I explore Kant’s reasons for excluding genius from science as well as the reasons that one might nevertheless be tempted to think that his account (...)
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  47.  85
    The Right and the Good.J. J. Thomson - 2005 - In Toni Rønnow-Rasmussen & Michael J. Zimmerman (eds.), Recent work on intrinsic value. Dordrecht: Springer. pp. 131--152.
  48. J. Guttmann: Jean Bodin in seinen Beziehungen zum Judentum. [REVIEW]J. Wild - 1907 - Freiburger Zeitschrift für Philosophie Und Theologie 21:383.
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  49.  36
    When did you first begin to feel it? — Locating the beginning of human consciousness.J. A. Burgess & S. A. Tawia - 1996 - Bioethics 10 (1):1-26.
    In this paper we attempt to sharpen and to provide an answer to the question of when human beings first become conscious. Since it is relatively uncontentious that a capacity for raw sensation precedes and underpins all more sophisticated mental capacities, our question is tantamount to asking when human beings first have experiences with sensational content. Two interconnected features of our argument are crucial. First, we argue that experiences with sensational content are supervenient on facts about electrical activity in the (...)
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  50.  22
    From Self Psychology to Moral Philosophy.J. David Velleman - 2000 - Noûs 34 (s14):349-377.
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