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Evolutionary Biology

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  • Scott Aaronson, Evolution of Mutating Software.
    We propose using random walks in software space as abstract formal models of biological evolution. The goal is to shed light on biological creativity using toy models of evolution that are simple enough to prove theorems about them. We consider two models: a single mutating piece of software, and a population of mutating software. The fitness function is taken from a well known problem in computability theory that requires an unlimited amount of creativity, the Busy Beaver problem. (Talk given Friday (...)
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  • Corey Abel (2009). Oakeshottian Modes at the Crossroads of the Evolution Debates. Zygon 44 (1):197-222.
    I examine Michael Oakeshott's theory of modes of experience in light of today's evolution debates and argue that in much of our current debate science and religion irrelevantly attack each other or, less commonly but still irrelevantly, seek out support from the other. An analysis of Oakeshott's idea of religion finds links between his early holistic theory of the state, his individualistic account of religious sensibility, and his theory of political, moral, and religious authority. Such analysis shows that a modern (...)
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  • Marshall Abrams, Infinite Populations and Counterfactual Frequencies in Evolutionary Theory.
    One finds intertwined with ideas at the core of evolutionary theory claims about frequencies in counterfactual and infinitely large populations of organisms, as well as in sets of populations of organisms. One also finds claims about frequencies in counterfactual and infinitely large populations—of events—at the core of an answer to a question concerning the foundations of evolutionary theory. The question is this: To what do the numerical probabilities found throughout evolutionary theory correspond? The answer in question says that evolutionary probabilities (...)
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  • Marshall Abrams (2007). How Do Natural Selection and Random Drift Interact? Philosophy of Science 74 (5).
    One controversy about the existence of so called evolutionary forces such as natural selection and random genetic drift concerns the sense in which such “forces” can be said to interact. In this paper I explain how natural selection and random drift can interact. In particular, I show how population-level probabilities can be derived from individual-level probabilities, and explain the sense in which natural selection and drift are embodied in these population-level probabilities. I argue that whatever causal character the individual-level probabilities (...)
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  • Marshall Abrams (2005). Teleosemantics Without Natural Selection. Biology and Philosophy 20 (1):97-116.
    Ruth Millikan and others advocate theories which attempt to naturalize wide mental content (e.g. beliefs.
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  • C. J. Adcock (1931). The Evolution of Existence. Australasian Journal of Philosophy 9 (2):134 – 138.
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  • Pieter R. Adriaens (2007). Evolutionary Psychiatry and the Schizophrenia Paradox: A Critique. Biology and Philosophy 22 (4).
    Evolutionary psychiatrists invariably consider schizophrenia to be a paradox: how come natural selection has not yet eliminated the infamous ‘genes for schizophrenia’ if the disorder simply crushes the reproductive success of its carriers, if it has been around for thousands of years already, and if it has a uniform prevalence throughout the world? Usually, the answer is that the schizophrenic genotype is subject to some kind of balancing selection: the benefits it confers would then outbalance the obvious damage it does. (...)
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  • Nicholas Agar (2001). Book Review. Beyond Evolution: Human Nature and the Limits of Evolutionary Explanation Anthony O'Hear. Mind 110 (438).
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  • Joseph Agassi (1974). Objective Knowledge: An Evolutionary Approach. Philosophia 4 (1).
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  • F. Michael Akeroyd (2004). Popper's Evolutionary Epistemology Revamped. Journal for General Philosophy of Science 35 (2).
    In a paper entitled “Revolution in Permanence”, published in the collection “Karl Popper: Philosophy and Problems”, John Worrall (1995) severely criticised several aspects of Karl Popper’s work before commenting that “I have no doubt that, given suffi-cient motivation, a case could be constructed on the basis of such remarks that Popper had a more sophisticated version of theory production......” (p. 102). Part of Worrall’s criticism is directed at a “strawpopper”: in his “Darwinian Model” emphasising the similarities and differences between genetic (...)
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  • Hartley B. Alexander (1906). The Evolution of Ideals. International Journal of Ethics 16 (3):311-332.
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  • J. McKenzie Alexander (2006). The Stag Hunt and the Evolution of Social Structure, Brian Skyrms. Cambridge University Press, 2004, 149 Pages. Economics and Philosophy 22 (3):441-448.
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  • J. McKenzie Alexander (2003). Random Boolean Networks and Evolutionary Game Theory. Philosophy of Science 70 (5).
    Recent years have seen increased interest in the question of whether it is possible to provide an evolutionary game‐theoretic explanation for certain kinds of social norms. I sketch a proof of a general representation theorem for a large class of evolutionary game‐theoretic models played on a social network, in hope that this will contribute to a greater understanding of the long‐term evolutionary dynamics of such models, and hence the evolution of social norms.
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  • J. McKenzie Alexander, Random Boolean Networks and Evolutionary Game Theory.
    Recent years have seen increased interest in the question of whether it is possible to provide an evolutionary game theoretic explanation for certain kinds of social norms. These explanatory approaches often rely on the fact that, in certain evolutionary models, the basin of attraction of "fair" or "just" strategies occupies a certain percentage of the state space. I sketch a proof of a general representation theorem for a large class of evolutionary game theoretic models played on a social network, in (...)
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  • J. McKenzie Alexander (2000). Evolutionary Explanations of Distributive Justice. Philosophy of Science 67 (3):490-516.
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  • S. Alexander (1892). Natural Selection in Morals. International Journal of Ethics 2 (4):409-439.
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  • Colin Allen (2000). The Evolution of Rational Demons. Behavioral and Brain Sciences 23 (5):742-742.
    If fast and frugal heuristics are as good as they seem to be, who needs logic and probability theory? Fast and frugal heuristics depend for their success on reliable structure in the environment. In passive environments, there is relatively little change in structure as a consequence of individual choices. But in social interactions with competing agents, the environment may be structured by agents capable of exploiting logical and probabilistic weaknesses in competitors' heuristics. Aspirations toward the ideal of a demon reasoner (...)
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  • Grant Allen (1880). Æsthetic Evolution in Man. Mind 5 (20):445-464.
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  • Thomas R. Alley (1982). Competition Theory, Evolution, and the Concept of an Ecological Niche. Acta Biotheoretica 31 (3).
    This article examines some of the main tenets of competition theory in light of the theory of evolution and the concept of an ecological niche. The principle of competitive exclusion and the related assumption that communities exist at competitive equilibrium - fundamental parts of many competition theories and models - may be violated if non-equilibrium conditions exist in natural communities or are incorporated into competition models. Furthermore, these two basic tenets of competition theory are not compatible with the theory of (...)
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  • Fritz Allhoff (2009). The Evolution of the Moral Sentiments and the Metaphysics of Morals. Ethical Theory and Moral Practice 12 (1).
    So-called evolutionary error theorists, such as Michael Ruse and Richard Joyce, have argued that naturalistic accounts of the moral sentiments lead us to adopt an error theory approach to morality. Roughly, the argument is that an appreciation of the etiology of those sentiments undermines any reason to think that they track moral truth and, furthermore, undermines any reason to think that moral truth actually exists. I argue that this approach offers us a false dichotomy between error theory and some form (...)
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  • Urooj Quezon Amjad (2006). A System of Innovation? Integrated Water Resources Management Complemented with Co-Evolution: Examples From Palestinian and Israeli Joint Water Management. World Futures 62 (3):157 – 170.
    A concept of co-evolution is argued to complement Integrated Water Resource Management's gap in administrative integration. Co-evolution's complement to Integrated Water Resource Management is explored through issues surrounding joint water management arrangements between the Israelis and Palestinians in the late 1990s and early 21st century. How co-evolution contributes to such a water management approach highlights how we might think about what it means to encourage innovation. Conclusions of the article suggest co-evolution provides the language and description for the changing interactions (...)
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  • R. Amundsom (1999). Review. Darwinism's Struggle for Survival: Heredity and the Hypothesis of Natural Selection. J Gayon. British Journal for the Philosophy of Science 50 (4).
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  • Ron Amundson (2008). Why Don't You Write About Something More Interesting, Lisa? Biology and Philosophy 23 (3).
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  • Ron Amundson (1998). Typology Reconsidered: Two Doctrines on the History of Evolutionary Biology. Biology and Philosophy 13 (2).
    Recent historiography of 19th century biology supports the revision of two traditional doctrines about the history of biology. First, the most important and widespread biological debate around the time of Darwin was not evolution versus creation, but biological functionalism versus structuralism. Second, the idealist and typological structuralist theories of the time were not particularly anti-evolutionary. Typological theories provided argumentation and evidence that was crucial to the refutation of Natural Theological creationism. The contrast between functionalist and structuralist approaches to biology continues (...)
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  • Yanming An (1997). Liang Shuming and Henri Bergson on Intuition: Cultural Context and the Evolution of Terms. Philosophy East and West 47 (3):337-362.
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  • Michael Anderson, Evolution, Embodiment and the Nature of the Mind.
    In: B. Hardy-Vallee & N. Payette, eds. Beyond the brain: embodied, situated & distributed cognition. (Cambridge: Cambridge Scholar’s Press), in press. Abstract: In this article, I do three main things: 1. First, I introduce an approach to the mind motivated primarily by evolutionary considerations. I do that by laying out four principles for the study of the mind from an evolutionary perspective, and four predictions that they suggest. This evolutionary perspective is completely compatible with, although broader than, the embodied cognition (...)
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  • Michael L. Anderson, Representation, Evolution and Embodiment.
    As part of the ongoing attempt to fully naturalize the concept of human being--and, more specifically, to re-center it around the notion of agency--this essay discusses an approach to defining the content of representations in terms ultimately derived from their central, evolved function of providing guidance for action. This 'guidance theory' of representation is discussed in the context of, and evaluated with respect to, two other biologically inspired theories of representation: Dan Lloyd's dialectical theory of representation and Ruth Millikan's biosemantics.
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  • Erik Angner, The Evolution of Eupathics: The Historical Roots of Subjective Measures of Well-Being.
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  • Michael A. Arbib (2005). From Monkey-Like Action Recognition to Human Language: An Evolutionary Framework for Neurolinguistics. Behavioral and Brain Sciences 28 (2):105-124.
    The article analyzes the neural and functional grounding of language skills as well as their emergence in hominid evolution, hypothesizing stages leading from abilities known to exist in monkeys and apes and presumed to exist in our hominid ancestors right through to modern spoken and signed languages. The starting point is the observation that both premotor area F5 in monkeys and Broca's area in humans contain a “mirror system” active for both execution and observation of manual actions, and that F5 (...)
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  • Andre Ariew, How to Understand Casual Relations in Natural Selection: Reply to Rosenberg and Bouchard.
    In “Two Ways of Thinking About Fitness and Natural Selection” (Matthen and Ariew [2002]; henceforth “Two Ways”), we asked how one should think of the relationship between the various factors invoked to explain evolutionary change – selection, drift, genetic constraints, and so on. We suggested that these factors are not related to one another as “forces” are in classical mechanics. We think it incoherent, for instance, to think of natural selection and drift as separate and opposed “forces” in evolutionary change (...)
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  • Andre Ariew, Two Ways of Thinking About Fitness and Natural Selection.
    ÒThe concept of fitness is,Ó Philip Kitcher says, Òimportant both to informal presentations of evolutionary theory and to the mathematical formulations of [population genetics].Ó1 He is absolutely right. The difficulty is to harmonize these very different ways of understanding its role. In this paper, we examine how natural selection relates to the other explanatory factors invoked by evolutionary theory. We argue that the Òinformal presentationsÓ to which Kitcher alludes give an incoherent account of the relation. A more appropriate model is (...)
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  • André Ariew (1998). Are Probabilities Necessary for Evolutionary Explanations? Biology and Philosophy 13 (2).
    Several philosophers of science have advanced an instrumentalist thesis about the use of probabilities in evolutionary biology. I investigate the consequences of instrumentalism on evolutionary explanations. I take issue with Barbara Horan's (1994) argument that probabilities are unnecessary to explain evolutionary change given the underlying deterministic character of evolutionary processes. First, I question Horan's deterministic assumption. Then, I attempt to undermine her Laplacian argument by demonstrating that whether probabilities are necessary depends upon the sort of questions one is asking.
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  • Brad Armendt (1993). Marinoff on Evolutionarily Stable Strategies. British Journal for the Philosophy of Science 44 (4):789-793.
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  • A. C. Armstrong (1912). The Progress of Evolution. Journal of Philosophy, Psychology and Scientific Methods 9 (13):337-342.
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  • A. C. Armstrong (1908). The Evolution of Pragmatism. Journal of Philosophy, Psychology and Scientific Methods 5 (24):645-650.
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  • Robert Arp (2007). Evolution and Two Popular Proposals for the Definition of Function. Journal for General Philosophy of Science 38 (1).
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  • Leandro Assis & Ingo Brigandt (2009). Homology: Homeostatic Property Cluster Kinds in Systematics and Evolution. Evolutionary Biology 36:248-255.
    Taxa and homologues can in our view be construed both as kinds and as individuals. However, the conceptualization of taxa as natural kinds in the sense of homeostatic property cluster kinds has been criticized by some systematists, as it seems that even such kinds cannot evolve due to their being homeostatic. We reply by arguing that the treatment of transformational and taxic homologies, respectively, as dynamic and static aspects of the same homeostatic property cluster kind represents a good perspective for (...)
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  • J. W. Atkinson (1992). Conceptual Issues in the Reunion of Development and Evolution. Synthese 91 (1-2).
    Recently a growing number of biologists have begun to consider the causal role that processes of embryonic development may play in evolution. This constitutes a reunion of these phenomena which had been linked in the nineteenth century through Haeckel's biogenetic law. This reunion may result in a new subdiscipline of biology, if there is a set of unique concepts and methods which tie the various research approaches together. Such concepts as bauplan, canalization, and developmental constraint, may serve in such a (...)
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  • Henri Atlan (1994). Intentionality in Nature. Against an All-Encompassing Evolutionary Paradigm: Evolutionary and Cognitive Processes Are Not Instances of the Same Process. Journal for the Theory of Social Behaviour 24 (1):67–87.
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  • Scott Atran & Ara Norenzayan (2004). Religion's Evolutionary Landscape: Counterintuition, Commitment, Compassion, Communion. Behavioral and Brain Sciences 27 (6):713-730.
    Religion is not an evolutionary adaptation per se, but a recurring cultural by-product of the complex evolutionary landscape that sets cognitive, emotional, and material conditions for ordinary human interactions. Religion exploits only ordinary cognitive processes to passionately display costly devotion to counterintuitive worlds governed by supernatural agents. The conceptual foundations of religion are intuitively given by task-specific panhuman cognitive domains, including folkmechanics, folkbiology, and folkpsychology. Core religious beliefs minimally violate ordinary notions about how the world is, with all of its (...)
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  • Robin Attfield (2000). Evolution, Theodicy and Value. Heythrop Journal 41 (3):281–296.
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  • Robert Aunger (2000). Phenogenotypes Break Up Under Countervailing Evolutionary Pressures. Behavioral and Brain Sciences 23 (1):147-147.
    The phenogenotype, a routinely co-occuring combination of a cultural and genetic trait, is unlikely to survive over time because of the potentially varying evolutionary pressures upon cultural as opposed to genetic traits. This is because the production and evaluation of cultural inputs will themselves be based on information previously acquired culturally. As a result, treating both cultural and genetic inheritance in a single recursion may be problematic.
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  • Francisco J. Ayala (1970). Teleological Explanations in Evolutionary Biology. Philosophy of Science 37 (1):1-15.
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  • Judith Bach (2002). Evolutionary Guidance System: A Community Design Project. World Futures 58 (5 & 6):417 – 423.
    The Evolutionary Guidance System (EGS) is a holistic and inclusive model for designing self-organizing social systems. Such a model must be driven by evolutionary values articulated by the members of the system. The small community is an ideal context for the "growing" of an Evolutionary Guidance System. This paper describes the creation of an EGS in a community organization. The rational for the activity is to bring harmony and build community among the members of the organization and, at the same (...)
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  • Alexander V. Badyaev (2008). Evolution Despite Natural Selection? Emergence Theory and the Ever Elusive Link Between Adaptation and Adaptability. Acta Biotheoretica 56 (3).
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  • Archie J. Bahm (1954). Evolutionary Naturalism. Philosophy and Phenomenological Research 15 (1):1-12.
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  • R. R. Baker & G. A. Parker (1973). The Origin and Evolution of Sexual Reproduction Up to the Evolution of the Male-Female Phenomenon. Acta Biotheoretica 22 (2).
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  • Yury V. Balashov (1992). On the Evolution of Natural Laws. British Journal for the Philosophy of Science 43 (3):343-370.
    's argumentation in favour of essential invariability of the fundamental laws of nature is critically examined. It is contended that within the realist framework Poincareé's arguments lose their apodictical force. In this sense the assumption of inconstancy of even the fundamental laws of nature is methodologically legitimate.
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  • András Balázs (2007). The Ontological Roots of Human Science: The Message of Evolution - the Physics of Freedom (Choice). World Futures 63 (8):568 – 583.
    The original proposal of H. H. Pattee (1971) of basing quantum theoretical measurement theory on the theory of the origin of life, and its far reaching consequences, is discussed in the light of a recently emerging biological paradigm of internal measurement. It is established that the "measurement problem" of quantum physics can, in principle, be traced back to the internal material constraints of the biological organisms, where choice is a fundamental attribute of the self-measurement of matter. In this light, which (...)
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  • Stephen W. Ball (1995). Gibbard's Evolutionary Theory of Rationality and its Ethical Implications. Biology and Philosophy 10 (2).
    Gibbard''s theory of rationality is evolutionary in terms of its result as well as its underpinning argument. The result is that judgments about what is rational are analyzed as being similar to judgments of morality — in view of what Darwin suggests concerning the latter. According to the Darwinian theory, moral judgments are based on sentiments which evolve to promote the survival and welfare of human societies. On Gibbard''s theory, rationality judgments should be similarly regarded as expressing emotional attachments to (...)
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