Results for 'D. Diehl Alexander'

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  1. Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019).Alexander D. Diehl, William D. Duncan & Gloria Sansò (eds.) - 2021
    The 10th International Conference on Biomedical Ontology (ICBO 2019), was held at the Jacobs School of Medicine and Biomedical Sciences of the University at Buffalo, in Buffalo, NY, USA. It was the 10-year anniversary of the ICBO series, and the return of the conference to Buffalo after the first two ICBO conferences were held in Buffalo in 2009 and 2011. ICBO 2019 was well attended, with 115 registered attendees and additional walk-ins from the local academic community. The program included excellent (...)
     
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  2. VO: Vaccine Ontology.Yongqun He, Lindsay Cowell, Alexander D. Diehl, H. L. Mobley, Bjoern Peters, Alan Ruttenberg, Richard H. Scheuermann, Ryan R. Brinkman, Melanie Courtot, Chris Mungall, Barry Smith & Others - 2009 - In Barry Smith (ed.), ICBO 2009: Proceedings of the First International Conference on Biomedical Ontology. Buffalo: NCOR.
    Vaccine research, as well as the development, testing, clinical trials, and commercial uses of vaccines involve complex processes with various biological data that include gene and protein expression, analysis of molecular and cellular interactions, study of tissue and whole body responses, and extensive epidemiological modeling. Although many data resources are available to meet different aspects of vaccine needs, it remains a challenge how we are to standardize vaccine annotation, integrate data about varied vaccine types and resources, and support advanced vaccine (...)
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  3. OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies.Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Melanie Courtot, Alexander D. Diehl, Damion Dooley, William Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert, Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall & Bjoern Peters - 2021 - BioaRxiv.
    Biological ontologies are used to organize, curate, and interpret the vast quantities of data arising from biological experiments. While this works well when using a single ontology, integrating multiple ontologies can be problematic, as they are developed independently, which can lead to incompatibilities. The Open Biological and Biomedical Ontologies Foundry was created to address this by facilitating the development, harmonization, application, and sharing of ontologies, guided by a set of overarching principles. One challenge in reaching these goals was that the (...)
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  4. The ImmPort Antibody Ontology.William Duncan, Travis Allen, Jonathan Bona, Olivia Helfer, Barry Smith, Alan Ruttenberg & Alexander D. Diehl - 2016 - Proceedings of the International Conference on Biological Ontology 1747.
    Monoclonal antibodies are essential biomedical research and clinical reagents that are produced by companies and research laboratories. The NIAID ImmPort (Immunology Database and Analysis Portal) resource provides a long-term, sustainable data warehouse for immunological data generated by NIAID, DAIT and DMID funded investigators for data archiving and re-use. A variety of immunological data is generated using techniques that rely upon monoclonal antibody reagents, including flow cytometry, immunofluorescence, and ELISA. In order to facilitate querying, integration, and reuse of data, standardized terminology (...)
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  5. The Neurological Disease Ontology.Mark Jensen, Alexander P. Cox, Naveed Chaudhry, Marcus Ng, Donat Sule, William Duncan, Patrick Ray, Bianca Weinstock-Guttman, Barry Smith, Alan Ruttenberg, Kinga Szigeti & Alexander D. Diehl - 2013 - Journal of Biomedical Semantics 4 (42):42.
    We are developing the Neurological Disease Ontology (ND) to provide a framework to enable representation of aspects of neurological diseases that are relevant to their treatment and study. ND is a representational tool that addresses the need for unambiguous annotation, storage, and retrieval of data associated with the treatment and study of neurological diseases. ND is being developed in compliance with the Open Biomedical Ontology Foundry principles and builds upon the paradigm established by the Ontology for General Medical Science (OGMS) (...)
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  6. Protein-centric connection of biomedical knowledge: Protein Ontology research and annotation tools.Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei Evsikov, Hongzhan Huang, Barry Smith & Others - 2011 - In Landgrebe Jobst & Smith Barry (eds.), Proceedings of the 2nd International Conference on Biomedical Ontology. CEUR, vol. 833. pp. 285-287.
    The Protein Ontology (PRO) web resource provides an integrative framework for protein-centric exploration and enables specific and precise annotation of proteins and protein complexes based on PRO. Functionalities include: browsing, searching and retrieving, terms, displaying selected terms in OBO or OWL format, and supporting URIs. In addition, the PRO website offers multiple ways for the user to request, submit, or modify terms and/or annotation. We will demonstrate the use of these tools for protein research and annotation.
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  7. An improved ontological representation of dendritic cells as a paradigm for all cell types.Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Liebermann, Chris Mungall, Richard H. Scheuermann, Barry Smith & Lindsay Cowell - 2009 - BMC Bioinformatics 10 (1):70.
  8. Towards an Ontology of Mental Functioning (ICBO Workshop), Third International Conference on Biomedical Ontology.Alexander P. Cox, Mark Jensen, William Duncan, Bianca Weinstock-Guttman, Kinga Szigeti, Alan Ruttenberg, Barry Smith & Alexander D. Diehl (eds.) - 2012 - Graz:
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  9. Ontologies for the study of neurological disease.Alexander P. Cox, Mark Jensen, William Duncan, Bianca Weinstock-Guttman, Kinga Szigeti, Alan Ruttenberg, Barry Smith & Alexander D. Diehl - 2012 - In Alexander P. Cox, Mark Jensen, William Duncan, Bianca Weinstock-Guttman, Kinga Szigeti, Alan Ruttenberg, Barry Smith & Alexander D. Diehl (eds.), Towards an Ontology of Mental Functioning (ICBO Workshop), Third International Conference on Biomedical Ontology. Graz:
    We have begun work on two separate but related ontologies for the study of neurological diseases. The first, the Neurological Disease Ontology (ND), is intended to provide a set of controlled, logically connected classes to describe the range of neurological diseases and their associated signs and symptoms, assessments, diagnoses, and interventions that are encountered in the course of clinical practice. ND is built as an extension of the Ontology for General Medical Sciences — a high-level candidate OBO Foundry ontology that (...)
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  10. An improved ontological representation of dendritic cells as a paradigm for all cell types.Masci Anna Maria, N. Arighi Cecilia, D. Diehl Alexander, E. Lieberman Anne, Mungall Chris, H. Scheuermann Richard, Barry Smith & G. Cowell Lindsay - 2009 - BMC Bioinformatics 10 (1):70.
    The Cell Ontology (CL) is designed to provide a standardized representation of cell types for data annotation. Currently, the CL employs multiple is_a relations, defining cell types in terms of histological, functional, and lineage properties, and the majority of definitions are written with sufficient generality to hold across multiple species. This approach limits the CL’s utility for cross-species data integration. To address this problem, we developed a method for the ontological representation of cells and applied this method to develop a (...)
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  11. Protein Ontology: A controlled structured network of protein entities.A. Natale Darren, N. Arighi Cecilia, A. Blake Judith, J. Bult Carol, R. Christie Karen, Cowart Julie, D’Eustachio Peter, D. Diehl Alexander, J. Drabkin Harold, Helfer Olivia, Barry Smith & Others - 2013 - Nucleic Acids Research 42 (1):D415-21..
    The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates to (...)
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  12. Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.R. Karp David, Marthandan Nishanth, G. E. Marsh Steven, Ahn Chul, C. Arnett Frank, S. DeLuca David, D. Diehl Alexander, Dunivin Raymond, Eilbeck Karen, Feolo Michael & Barry Smith - 2009 - Human Molecular Genetics 19 (4):707-719.
    Significant associations have been found between specific human leukocyte antigen (HLA) alleles and organ transplant rejection, autoimmune disease development, and the response to infection. Traditional searches for disease associations have conventionally measured risk associated with the presence of individual HLA alleles. However, given the high level of HLA polymorphism, the pattern of amino acid variability, and the fact that most of the HLA variation occurs at functionally important sites, it may be that a combination of variable amino acid sites shared (...)
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  13.  44
    Legality and Legitimacy.Alexander P. D'Entréves - 1963 - Review of Metaphysics 16 (4):687 - 702.
    We all know of course more or less what the answer of the historian would be if we turned to him alone for enlightenment. He would, to be sure, begin by pointing out that throughout Western history the two notions of legality and legitimacy have played an important part in political thought, providing as it were two of its most solid pillars. Without reaching as far back as the Greeks, the historian would probably recall to our attention the distinction, current (...)
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  14.  25
    Toward a model of eye movement control in reading.Erik D. Reichle, Alexander Pollatsek, Donald L. Fisher & Keith Rayner - 1998 - Psychological Review 105 (1):125-157.
  15.  94
    Correction to John D. Norton “How to build an infinite lottery machine”.John D. Norton & Alexander R. Pruss - 2018 - European Journal for Philosophy of Science 8 (1):143-144.
    An infinite lottery machine is used as a foil for testing the reach of inductive inference, since inferences concerning it require novel extensions of probability. Its use is defensible if there is some sense in which the lottery is physically possible, even if exotic physics is needed. I argue that exotic physics is needed and describe several proposals that fail and at least one that succeeds well enough.
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  16.  15
    Natural Law: An Introduction to Legal Philosophy.Alexander Passerin D'Entrèves & Cary J. Nederman - 1994 - New Brunswick, N.J.: Routledge.
    This is the classic study of the history and continuing philosophical values of the law of nature. D'Entreves discerned three distinct sources that have contributed to the development of natural law: Roman law teachings, Christian beliefs regarding law, and egalitarian and revolutionary theories of the Enlightenment. Now regarded as a classic work, Natural Law has exercised considerable influence over the course of Anglo-American legal theory in the past forty years. The statements of Clarence Thomas during his 1991 Senate confirmation hearings (...)
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  17. The Medieval Contribution to Political Thought: Thomas Aquinas, Marsilius of Padua, Richard Hooker.Alexander Passerin D'entreves - 1941 - Philosophical Review 50:345.
     
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  18. Representing disease courses: An application of the Neurological Disease Ontology to Multiple Sclerosis Typology.Mark Jensen, Alexander P. Cox, Barry Smith & Alexander Diehl - 2013 - In Jensen Mark, Cox Alexander P., Diehl Alexander & Smith Barry (eds.), Proceedings of the Fourth International Conference on Biomedical Ontology (ICBO), CEUR 1060.
    The Neurological Disease Ontology (ND) is being developed to provide a comprehensive framework for the representation of neurological diseases (Diehl et al., 2013). ND utilizes the model established by the Ontology for General Medical Science (OGMS) for the representation of entities in medicine and disease (Scheuermann et al., 2009). The goal of ND is to include information for each disease concerning its molecular, genetic, and environmental origins, the processes involved in its etiology and realization, as well as its clinical (...)
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  19. Fractionation and lacalization of distinct frontal lobe processes: Evidence from focal lesions in humans.D. T. Stuss, M. P. Alexander, D. Floden, M. A. Binns, B. Levine, A. R. McIntosh & R. T. Knight - 2002 - In Donald T. Stuss & Robert T. Knight (eds.), Principles of Frontal Lobe Function. Oxford University Press.
  20. Fractionalization and localization of distinct frontal lobe processes: Evidence from focal lesions in humans.D. T. Stuss, M. P. Alexander, D. Floden, M. A. Binns, B. Levine, A. R. Mcintosh, N. Rajah & S. J. Hevenor - 2002 - In Donald T. Stuss & Robert T. Knight (eds.), Principles of Frontal Lobe Function. Oxford University Press.
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    Using E-Z Reader to simulate eye movements in nonreading tasks: A unified framework for understanding the eye–mind link.Erik D. Reichle, Alexander Pollatsek & Keith Rayner - 2012 - Psychological Review 119 (1):155-185.
  22.  22
    The Notion of the State: An Introduction to Political Theory.J. R. Lucas & Alexander Passerin D'Entreves - 1968 - Philosophical Quarterly 18 (72):281.
  23.  16
    Jewish virtue ethics.Geoffrey D. Claussen, Alexander Green & Alan Mittleman (eds.) - 2023 - Albany: State University of New York Press.
    Expands the horizons of Jewish virtue ethics, demonstrating how central virtue has been to the history of Jewish ethics.
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  24.  28
    “Blindsight” and subjective awareness of fearful faces: Inversion reverses the deficits in fear perception associated with core psychopathic traits.Lindsay D. Oliver, Alexander Mao & Derek G. V. Mitchell - 2015 - Cognition and Emotion 29 (7):1256-1277.
    Though emotional faces preferentially reach awareness, the present study utilised both objective and subjective indices of awareness to determine whether they enhance subjective awareness and “blindsight”. Under continuous flash suppression, participants localised a disgusted, fearful or neutral face (objective index), and rated their confidence (subjective index). Psychopathic traits were also measured to investigate their influence on emotion perception. As predicted, fear increased localisation accuracy, subjective awareness and “blindsight” of upright faces. Coldhearted traits were inversely related to subjective awareness, but not (...)
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  25.  9
    Arte fortunata-un" divertimento". Adorno," l'arte e le arti".Alexander García Dϋttmann - 2005 - Iride: Filosofia e Discussione Pubblica 18 (1):157-164.
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  26.  27
    Philosophical Implications of Inflationary Cosmology.Joshua Knobe, Ken D. Olum & Alexander Vilenkin - 2006 - British Journal for the Philosophy of Science 57 (1):47-67.
    Recent developments in cosmology indicate that every history having a non-zero probability is realized in infinitely many distinct regions of spacetime. Thus, it appears that the universe contains infinitely many civilizations exactly like our own, as well as infinitely many civilizations that differ from our own in any way permitted by physical laws. We explore the implications of this conclusion for ethical theory and for the doomsday argument. In the infinite universe, we find that the doomsday argument applies only to (...)
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  27.  28
    Systematic overview of Freedom of Information Act requests to the Department of Health and Human Services from 2008 to 2017.Joseph S. Ross, Peter Lurie, Christopher J. Morten, Joshua D. Wallach & Alexander C. Egilman - 2019 - Research Integrity and Peer Review 4 (1).
    BackgroundThe Freedom of Information Act (FOIA) provides access to unreleased government records that can be used to enhance the transparency and integrity of biomedical research. We characterized FOIA requests to Department of Health and Human Services (HHS) agencies, including request outcomes, processing times, backlogs, and costs.MethodsUsing HHS FOIA annual reports, we extracted data on the number of FOIA requests received and processed by HHS agencies between 2008 and 2017, as well as request outcomes. Processing times were reported in three time (...)
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  28.  20
    Effects of segmentation and expectancy on matching time for words and nonwords.Robert M. Schindler, Arnold D. Well & Alexander Pollatsek - 1974 - Journal of Experimental Psychology 103 (1):107.
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  29.  9
    Biomedical journal speed and efficiency: a cross-sectional pilot survey of author experiences.Joseph S. Ross, Harlan M. Krumholz, Nishwant Swami, Anand D. Gopal, Alexander C. Egilman & Joshua D. Wallach - 2018 - Research Integrity and Peer Review 3 (1).
    BackgroundAlthough the peer review process is believed to ensure scientific rigor, enhance research quality, and improve manuscript clarity, many investigators are concerned that the process is too slow, too expensive, too unreliable, and too static. In this feasibility study, we sought to survey corresponding authors of recently published clinical research studies on the speed and efficiency of the publication process.MethodsWeb-based survey of corresponding authors of a 20% random sample of clinical research studies in MEDLINE-indexed journals with Ovid MEDLINE entry dates (...)
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  30.  27
    A perceptual pitch boundary in a non-human primate.Olivier Joly, Simon Baumann, Colline Poirier, Roy D. Patterson, Alexander Thiele & Timothy D. Griffiths - 2014 - Frontiers in Psychology 5.
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  31.  7
    Symposium: The Idea of a Transcendent Deity: Is the Belief in a Transcendent God Philosophically Tenable?R. Hanson, Hilda D. Oakeley & Alexander Mair - 1924 - Aristotelian Society Supplementary Volume 4 (1):197-240.
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  32.  41
    Symposium: The Idea of a Transcendent Deity: Is the Belief in a Transcendent God Philosophically Tenable?R. Hanson, Hilda D. Oakeley, Alexander Mair & Clement C. J. Webb - 1924 - Aristotelian Society Supplementary Volume 4 (1):197 - 240.
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  33.  14
    Index Nominum.Niccolo Acciaiuoli, Franciscus Francesco Accorso Accursius, Pierre D' Ailly, Alexander Aurelius, Severus Alexander, Jacques Almain, Angelus Carletus de Clavasio, An Carletus & Emperor Arcadius - 1997 - In Jill Kraye (ed.), Cambridge translations of Renaissance philosophical texts. New York: Cambridge University Press. pp. 293.
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  34. Events, processes, and states.Alexander P. D. Mourelatos - 1978 - Linguistics and Philosophy 2 (3):415 - 434.
    The familiar Vendler-Kenny scheme of verb-types, viz., performances (further differentiated by Vedler into accomplishments and achievements), activities, and states, is too narrow in two important respects. First, it is narrow linguistically. It fails to take into account the phenomenon of verb aspect. The trichotomy is not one of verbs as lexical types but of predications. Second, the trichotomy is narrow ontologically. It is a specification in the context of human agency of the more fundamental, topic-neutral trichotomy, event-process-state.The central component in (...)
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  35.  10
    The Collected Works of Alexander Csoma de KőrösThe Collected Works of Alexander Csoma de Koros.D. Seyfort Ruegg, J. Terjék, Alexander Csoma de Kőrös, J. Terjek & Alexander Csoma de Koros - 1986 - Journal of the American Oriental Society 106 (3):598.
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  36.  15
    The route of Parmenides.Alexander P. D. Mourelatos - 1970 - New Haven,: Yale University Press.
    Analyzes the poem "On Nature" by Parmenides, arguing that is actually a philosophical argument disguised as Homer-like mythological journey. Original.
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  37.  50
    A biological interpretation of moral systems.Richard D. Alexander - 1985 - Zygon 20 (1):3-20.
    . Moral systems are described as systems of indirect reciprocity, existing because of histories of conflicts of interest and arising as outcomes of the complexity of social interactions in groups of long‐lived individuals with varying conflicts and confluences of interest and indefinitely iterated social interactions. Although morality is commonly defined as involving justice for all people, or consistency in the social treatment of all humans, it may have arisen for immoral reasons, as a force leading to cohesiveness within human groups (...)
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  38.  15
    Ordering of rare gas films on a decagonal Al–Ni–Co quasicrystal.R. D. Diehl, W. Setyawan, N. Ferralis, R. A. Trasca, M. W. Cole & S. Curtarolo - 2007 - Philosophical Magazine 87 (18-21):2973-2980.
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  39. Gorgias on the Function of Language.Alexander P. D. Mourelatos - 1987 - Philosophical Topics 15 (2):135-170.
  40.  21
    Low-energy electron diffraction study of an aperiodic thin film of Cu on 5-fold i-Al-Pd-Mn.K. Pussi, D. E. Reid, N. Ferralis, R. McGrath, T. A. Lograsso, A. R. Ross & R. D. Diehl - 2008 - Philosophical Magazine 88 (13-15):2103-2110.
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    Aristotle’s kinêsis / energeia Distinction.Alexander P. D. Mourelatos - 1993 - Canadian Journal of Philosophy 23 (3):385-388.
    I am grateful to the editors of the Canadian Journal of Philosophy for inviting me to write a comment on Kathleen Gill’s ‘On the Metaphysical Distinction Between Processes and Events’. I readily concede that she is right in the central criticism she makes of my 1978 paper: that a properly metaphysical or ontological distinction between processes and events, if it is to be made at all, cannot be sustained on the basis of the informal linguistic criteria I offered in ‘Events, (...)
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  42. Do cortical and basal ganglionic motor areas use “motor programs” to control movement?Garrett E. Alexander, Mahlon R. DeLong & Michael D. Crutcher - 1992 - Behavioral and Brain Sciences 15 (4):656-665.
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  43.  22
    The Pre-Socratics.Alexander P. D. Mourelatos (ed.) - 1974 - Garden City, N.Y.,: Anchor Press.
    A lavishly decorated handbook of medicine was conceived for the lay public on topics such as human health, healing, medicine, and household management.
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  44.  25
    Targeting Procrastination Using Psychological Treatments: A Systematic Review and Meta-Analysis.Alexander Rozental, Sophie Bennett, David Forsström, David D. Ebert, Roz Shafran, Gerhard Andersson & Per Carlbring - 2018 - Frontiers in Psychology 9.
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  45.  24
    The ordering of a Xe monolayer on quasicrystalline Al–Ni–Co.R. D. Diehl, N. Ferralis, K. Pussi, M. W. Cole, W. Setyawan & S. Curtarolo - 2006 - Philosophical Magazine 86 (6-8):863-868.
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  46.  35
    Presocratic philosophy: essays in honour of Alexander Mourelatos.Alexander P. D. Mourelatos, Victor Miles Caston & Daniel W. Graham (eds.) - 2002 - Aldershot, Hants, England: Ashgate.
    This book presents some of the most recent trends and developments in Presocratic scholarship. A wide range of topics are covered - from the metaphysical to the moral to the methodological - as well as a broad a range of authors: from recognized figures such as Heraclitus and Parmenides to Sophistic thinkers whose place has traditionally been marginalized, such as Gorgias and the author of the Dissoi Logoi. Several of the pieces are concerned with the later reception and influence of (...)
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  47.  12
    The Unity of Mankind in Greek Thought.Alexander P. D. Mourelatos & H. C. Baldry - 1967 - American Journal of Philology 88 (4):488.
  48.  70
    The doctor-patient relationship in the post-managed care era.G. Caleb Alexander & John D. Lantos - 2006 - American Journal of Bioethics 6 (1):29 – 32.
    The growth of managed care was accompanied by concern about the impact that changes in health care organization would have on the doctor-patient relationship. We now are in a “post-managed care era,” where some of these changes in health care delivery have come to pass while others have not. A re-examination of the DPR in this setting suggests some surprising results. Rather than posing a new and unprecedented threat, managed care was simply the most recent of numerous strains on the (...)
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  49.  84
    Some Alternatives in Interpreting Parmenides.Alexander P. D. Mourelatos - 1979 - The Monist 62 (1):3-14.
    In the work of interpreting Parmenides we have witnessed in the ’sixties and ’seventies, in English language scholarship, that rarest of phenomena in the study of ancient philosophy, the emergence of a consensus. Four interpretive theses now seem quite widely shared: Parmenides deliberately suppresses the subject of esti, “is,” or einai, “to be,” in his statement of the two “routes” in B2, his intention being to allow the subject to become gradually specified as the argument unfolds. The negative route, ouk (...)
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  50.  22
    Aristotle's Rationalist A ccount of Qualitative Interaction.Alexander P. D. Mourelatos - 1984 - Phronesis 29 (1):1 - 16.
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