It is now widely accepted that microorganisms play many important roles in the lives of plants and animals. Every macroorganism has been shaped in some way by microorganisms. The recognition of the ubiquity and importance of microorganisms has led some to argue for a revolution in how we understand biological individuality and the primary units of natural selection. The term “holobiont” was introduced as a name for the biological unit made up by a host and all of its associated microorganisms, (...) and much of this new debate about biological individuality has focused on whether holobionts are integrated individuals or communities. In this paper, I show how parts of the holobiont can span both characterizations. I argue that most holobionts share more affinities with communities than they do with organisms, and that, except for maybe in rare cases, holobionts do not meet the criteria for being organisms, evolutionary individuals, or units of selection. (shrink)

In the original publication, the acknowledgment was published incorrectly. The correct version is given below.

The way people come to report private stimulation arising within their own bodies is not well understood. Although the Darwinian assumption of biological continuity has been the basis of extensive animal modeling for many human biological and behavioral phenomena, few have attempted to model human communication based on private stimulation. This target article discusses such an animal model using concepts and methods derived from the study of discriminative stimulus effects of drugs and recent research on interanimal communication. We (...) discuss how humans acquire the capacity to identify and report private stimulation and we analyze intra- and interspecies differences in neurochemical mechanisms for transducing interoceptive stimuli, enzymatic and other metabolic factors, learning ability, and discrimination learning histories and their relation to psychiatric and developmental disabilities. (shrink)

The species problem is the longstanding puzzle regarding the nature of species. This paper aims to describe how biologists experience little communication breakdown when they have different conceptions of species. For this purpose, I analyze two debates on species and speciation between Guy Bush and Jerry Coyne & H. Allen Orr. Although they have radically different ideas on species, they experience little communication difficulty. I will argue that this is because they implicitly agreed (...) on the referent of the group of organisms being addressed and possible causal factors of the speciation process. This analysis confirms a leading account in the general philosophy of science on the way in which scientists avoid the incommensurability threat. (shrink)

Species are ordinarily conceived of as being native or non-native to either a geographical location or an ecological community. I submit that species may also be native or non-native to human communities. I argue, by way of an analogy with varieties of domesticated and cultivated species, that this sense of nativity is grounded by the cultural relationships human communities have with species. A further analogy is drawn with the motivations of varietal nativists – who seek to (...) protect native varieties of domesticated and cultivated species for the sake of their cultural value – to argue for the consideration of the cultural value of native species in environmental policy decisions regarding invasive non-native species. (shrink)

This paper analyzes community ecologist Charles Elton’s ideas on animal communities, and situates them with respect to the classical opposition between organicist–holistic and individualistic–reductionist ecological views drawn by many historians of ecology. It is argued that Elton espoused a moderate ecological holism, which drew a middle way between the stricter ecological holism advocated by organicist ecologists and the merely aggregationist views advocated by some of their opponents. It is also argued that Elton’s moderate ecological holism resonated with his preference for (...) analogies between ecological communities and human societies over more common ones between communities and individual organisms. I discuss, on the one hand, how the functionalist-interactionist approach to community ecology introduced by Elton entailed a view of ecological communities as more or less self-maintaining functionally organized wholes, and how his ideas on this matter were incorporated into their views by organicist ecologists Frederic Clements, Victor Shelford, and Warder C. Allee et al. On the other hand, I identify some important divergences between Elton’s ecological ideas and those of organicist ecologists. Specifically, I show how Elton’s ideas on species distribution, animal migrations, and ecological succession entailed a view of animal communities as exhibiting a weaker degree of part-whole integration than that attributed to them by Clements and Shelford; and how Elton’s mixed stance on the balance of nature idea and his associated views on community stability attributed to communities a weaker form of self-regulation than that attributed to them by Allee et al. (shrink)

We defend a realistic attitude towards biological species. We argue that two species are not different species because they differ in intrinsic features, be they phenotypic or genomic, but because they are separated with regard to gene flow. There are no intrinsic species essences. However, there are relational ones. We argue that bearing a gene flow relation to conspecifics may serve as the essence of a species. Our view of the species as a Gene-Flow (...) Community differs from Mayr’s definition of the species as a reproductive community. In a reproductive community, each organism is able to successfully reproduce with each other. However, there are species in which geographically distant organisms lost their ability to successfully reproduce, due to strong genetic adaptations to the respective local environmental conditions. Despite this loss of the ability to mutually reproduce, they are still bound by gene flow via continuous intermediate populations. This replacement of Mayr’s notion of an interbreeding potential as a criterion for species membership has important implications for the treatment of populations in allopatry and sympatry. (shrink)

Can mere conceptual competence explain the apriori? Many contemporary theorists believe that conceptual competence grounds apriori conceptual truths – and that this fact helps explain how thinkers can have apriori justification for accepting these truths and reasoning in accord with them. In this chapter, I'll examine several contemporary defenses of the conceptual approach to apriority in order to clarify their core commitments about the nature of concepts. The common thread, I'll argue, is a picture of concepts that combines a conceptual (...) role model of conceptual competence with a rationalizing approach to the determination of semantic contents. My first aim is to show how this model of concepts has the potential to ground apriori truth and justification. My second aim is to show how the model involves problematic commitments about concepts, which can be avoided on an alternative relational model of concepts. (shrink)

Some critics of invasion biology have argued the invasion of ecosystems by nonindigenous species can create more valuable ecosystems. They consider invaded communities as more valuable because they potentially produce more ecosystem services. To establish that the introduction of nonindigenous species creates more valuable ecosystems, they defend that value is provisioned by ecosystem services. These services are derived from ecosystem productivity, the production and cycling of resources. Ecosystem productivity is a result of biodiversity, which is understood as local (...) species richness. Invasive species increase local species richness and, therefore, increase the conservation value of local ecosystems. These views are disseminating to the public via a series of popular science books. Conservationists must respond to these views, and I outline a method of rejecting such arguments against controlling invasive species. Ecological systems are valuable for more than local productivity and biodiversity is not accurately described by a local species count. (shrink)

In The Origin of Species (1859) Darwin challenged many of the most deeply-held beliefs of the Western world. Arguing for a material, not divine, origin of species, he showed that new species are achieved by "natural selection." The Origin communicates the enthusiasm of original thinking in an open, descriptive style, and Darwin's emphasis on the value of diversity speaks more strongly now than ever. As well as a stimulating introduction and detailed notes, this edition offers a register (...) of the many writers referred to by Darwin in the text. (shrink)

Systematic sampling of communities gives rise to large contingency tables summing up possible changes in the assemblages' structure. Such tables are generally analysed by multivariate statistical methods, which are ill-suited for simultaneously analysing rare and common species (Field et al., 1982). In order to separately process species belonging to either of these categories, we propose a statistical method to select common species in a sequence of ecological surveys. It is based on a precise definition of rarity, and (...) depends on a rarity parameter. In this work, this parameter will be optimised so that the sub-table of common species captures the essential features of the complete table as well as possible. In this way we analysed the spatio-temporal evolution of macrobenthic communities from the Algiers harbour to study the pollution influence during a year. The examination of the communities' structuring was done through Principal Components Analysis (PCA) of the species proportions table. Environmental variables were simultaneously sampled. We show that the data structure can be explained by about 25% of the total number of present species. Two environmental gradients were brought to the fore inside the harbour, the first one representing pollution, and the second one representing hydrological instabilities. (shrink)

All methodologies used to characterize mother-infant interaction in non-human primates includes mother, infant, and other social factors. The chief difference is their understanding of how this interaction takes place. Using chimpanzees as a model, I will compare the different methodologies used to describe mother-infant interaction and show how implicit notions of communication and social interaction shape descriptions of this kind of interaction. I will examine the limitations and advantages of different approaches used in mother-infant studies and I will sketch (...) an alternative approach to studying mother-infant interaction in non-human primates that adopts Jerome Bruner’s developmental studies on human infant communication. (shrink)

If ecological systems are functionally organised, they can possess functions or malfunctions. Natural function would provide justification for conservationists to act for the protection of current ecological arrangements and control the presence of populations that create ecosystem malfunctions. Invasive species are often thought to be malfunctional for ecosystems, so functional arrangement would provide an objective reason for their control. Unfortunately for this prospect, I argue no theory of function, which can support such normative conclusions, can be applied to large (...) scale ecosystems. Instead ecological systems have causal structure, with small clusters of populations achieving functional arrangement. This, however, does not leave us without reason to control invasive species. We can look at the causal arrangement of ecological systems for populations that support ecological features that we should preserve. Populations that play a causal role in reducing biodiversity should be controlled, because biodiversity is a good all prudent agents should want to preserve. (shrink)

As a contribution to the debate on the future of philosophy as an autonomous discipline beyond its current function within Western-type universities, a comparison is offered between three diverging strategies of “speaking the universal” which keep their relevance today; the “Double Truth” strategy for secular tolerance, illustrated by Spinoza and Wittgenstein; the construction of the universal as “hegemony,” analyzed by Hegel and Marx in terms of collective consciousnesses or ideologies; and the program of generalized translation as it emerges from the (...) critique of traditional “paradoxes of the untranslatable” in the works of contemporary socio-linguists and pragmatic philosophers. The conclusion remains an open questioning on the equivocity of the universal. (shrink)

Microalgae in the wild often form consortia with other species promoting their own health and resource foraging opportunities. The recent application of microalgae cultivation and deployment in commercial photobioreactors (PBR) so far has focussed on single species of algae, resulting in multi-species consortia being largely unexplored. Reviewing the current status of PBR ecological habitat, this article argues in favor of further investigation into algal communication with conspecifics and interspecifics, including other strains of microalgae and bacteria. These (...) mutualistic species form the ‘phycosphere’: the micro-environment surrounding microalgal cells, potentiating the production of certain metabolites through biochemical interaction with cohabitating microorganisms. A better understanding of the phycosphere could lead to novel PBR configurations, capable of incorporating algal-microbial consortia, potentially proving more effective than single-species algal systems. (shrink)

This article utilizes the work of Judith Butler in order to chart a queer and feminist animal studies, an animal studies that celebrates our shared embodied finitude. Butler's commentary on other animals remains dispersed and fragmented throughout books, lectures, and interviews over the course of the last several years. This work is critically synthesized in conjunction with her work on mourning and precarious lives. By developing an anti-anthropocentric understanding of mourning and precarious lives, this article hopes to create ontological, ethical, (...) and political concepts that resist the violence of the present. In so doing, the article contrasts Butler's understanding of precarious life with Giorgio Agamben's understanding of bare life in order to conceive of precariousness as constitutive of social reality. This intellectual labor lays the groundwork for understanding mourning the lives of other animals as a political act that produces new communities, rather than as an individuating and isolating emotion. (shrink)

In lieu of an abstract, here is a brief excerpt of the content:Ethics & the Environment 8.1 (2003) 143-150 [Access article in PDF] Species Nova [To See Anew]Art as Ecology David Haley Looking Back From space, looking back at earth, we may see three key issues: the accelerating increase of the human species, the accelerating decrease of other species, and the accelerating effects of climate change. We might ask, how are we to cope with these changes creatively?That (...) our societies tend to value economics over ecology, and monoculture and agro-industry over diversity and permaculture, is certainly worthy of ethical attention. Here I want to invoke a call for integrating art as a necessary contribution to ecological intervention. I consider how artists may engage uncertainty, and how art may be used to develop new ways of seeing and "drawing." This is art for evolutionary survival, not commodification. Art that practices care, shared responsibility, and diversity in the pursuit of eco-centric cultures. Although this paper mainly references visual art forms, this should not be taken to exclude others. Here I am primarily concerned with identifying some of the possible forms of ecological or eco-art. This is art practiced by artist and inventors in the manner of the archetype of Daedalus and worthy of the name implied by the root of the word art. Rt, an ancient term from the Rg Vedas, refers to the virtuous, continuing creation of the cosmos. [End Page 143] Seeing is Believing/ Uncertainty in View The suffix species nova is ascribed by scientists to a new bacterium species, prior to the confirmation of its existence in the appropriate academic journals. The word species means "to look" and "a class of things, living organisms capable of exchanging genes, classified as a taxonomic rank below a genus and denoted by a Latin binomial." It also refers to "the visible form of each of the elements of consecrated bread and wine in the Eucharist." Nova refers to the mistaken sighting of a new star, a flash of brightness that quickly dims. Something novel is a new kind of nature, something strange or previously unknown, and novelty refers to invention. Species nova: two words that evoke ideas about innovations of visual experience and belief.I use the phrase to denote the potential for understanding a new order and evolutionary change—"to see anew." I am also aware that species nova could mean a mistaken religious experience, or a class of living things that flashes brightly and quickly dims. Uncertainty is embedded in the richness of meanings.It is ten years since the Earth Summit in Rio popularized the notion of sustainable development and introduced Agenda 21 as a strategy to achieve it. Sadly, culture and art, two of the systems that define humanity, were not mentioned among the necessary tools for building a better future.But what is sustainable development? Is it about conservation, restoration, or regeneration? Will it stop global warming and feed the poor, or is it like candyfloss—a confection of transient comfort, with no real meaning? Has it become a corrupt cultural construct, an anthropocentric myth in the vain pursuit of hope?Recently the Intergovernmental Panel on Climate Change confirmed that "most of the warming observed over the past 50 years is attributable to human activities." However, the projections and models that have been developed for policy makers to envisage climate change scenarios demonstrate the limits of our ability to understand the situation, let alone adapt to it. A recent review in Nature, comparing two twenty-year forecasts ironically concluded: Uncertainties therefore remain that are beyond the statistical uncertainties described in the two papers. But both sets of authors point out that the upper bound on the potential warming for 2100 may well be [End Page 144] above the IPCC figure of 5.8K under 'heavy emissions' scenarios. So policy-makers should not discount the possibility of a very warm climate considering long-range policy options. (Funnel 2001, 5) A subsequent article in Nature's Climate Change Review reveals even more concern about communicating scientific uncertainty, because models that simulate long-term climate changes cannot be tested using real... (shrink)

In lieu of an abstract, here is a brief excerpt of the content:Ethics & the Environment 8.1 (2003) 143-150 [Access article in PDF] Species Nova [To See Anew]Art as Ecology David Haley Looking Back From space, looking back at earth, we may see three key issues: the accelerating increase of the human species, the accelerating decrease of other species, and the accelerating effects of climate change. We might ask, how are we to cope with these changes creatively?That (...) our societies tend to value economics over ecology, and monoculture and agro-industry over diversity and permaculture, is certainly worthy of ethical attention. Here I want to invoke a call for integrating art as a necessary contribution to ecological intervention. I consider how artists may engage uncertainty, and how art may be used to develop new ways of seeing and "drawing." This is art for evolutionary survival, not commodification. Art that practices care, shared responsibility, and diversity in the pursuit of eco-centric cultures. Although this paper mainly references visual art forms, this should not be taken to exclude others. Here I am primarily concerned with identifying some of the possible forms of ecological or eco-art. This is art practiced by artist and inventors in the manner of the archetype of Daedalus and worthy of the name implied by the root of the word art. Rt, an ancient term from the Rg Vedas, refers to the virtuous, continuing creation of the cosmos. [End Page 143] Seeing is Believing/ Uncertainty in View The suffix species nova is ascribed by scientists to a new bacterium species, prior to the confirmation of its existence in the appropriate academic journals. The word species means "to look" and "a class of things, living organisms capable of exchanging genes, classified as a taxonomic rank below a genus and denoted by a Latin binomial." It also refers to "the visible form of each of the elements of consecrated bread and wine in the Eucharist." Nova refers to the mistaken sighting of a new star, a flash of brightness that quickly dims. Something novel is a new kind of nature, something strange or previously unknown, and novelty refers to invention. Species nova: two words that evoke ideas about innovations of visual experience and belief.I use the phrase to denote the potential for understanding a new order and evolutionary change—"to see anew." I am also aware that species nova could mean a mistaken religious experience, or a class of living things that flashes brightly and quickly dims. Uncertainty is embedded in the richness of meanings.It is ten years since the Earth Summit in Rio popularized the notion of sustainable development and introduced Agenda 21 as a strategy to achieve it. Sadly, culture and art, two of the systems that define humanity, were not mentioned among the necessary tools for building a better future.But what is sustainable development? Is it about conservation, restoration, or regeneration? Will it stop global warming and feed the poor, or is it like candyfloss—a confection of transient comfort, with no real meaning? Has it become a corrupt cultural construct, an anthropocentric myth in the vain pursuit of hope?Recently the Intergovernmental Panel on Climate Change confirmed that "most of the warming observed over the past 50 years is attributable to human activities." However, the projections and models that have been developed for policy makers to envisage climate change scenarios demonstrate the limits of our ability to understand the situation, let alone adapt to it. A recent review in Nature, comparing two twenty-year forecasts ironically concluded: Uncertainties therefore remain that are beyond the statistical uncertainties described in the two papers. But both sets of authors point out that the upper bound on the potential warming for 2100 may well be [End Page 144] above the IPCC figure of 5.8K under 'heavy emissions' scenarios. So policy-makers should not discount the possibility of a very warm climate considering long-range policy options. (Funnel 2001, 5) A subsequent article in Nature's Climate Change Review reveals even more concern about communicating scientific uncertainty, because models that simulate long-term climate changes cannot be tested using real... (shrink)

In lieu of an abstract, here is a brief excerpt of the content:Ethics & the Environment 8.1 (2003) 143-150 [Access article in PDF] Species Nova [To See Anew]Art as Ecology David Haley Looking Back From space, looking back at earth, we may see three key issues: the accelerating increase of the human species, the accelerating decrease of other species, and the accelerating effects of climate change. We might ask, how are we to cope with these changes creatively?That (...) our societies tend to value economics over ecology, and monoculture and agro-industry over diversity and permaculture, is certainly worthy of ethical attention. Here I want to invoke a call for integrating art as a necessary contribution to ecological intervention. I consider how artists may engage uncertainty, and how art may be used to develop new ways of seeing and "drawing." This is art for evolutionary survival, not commodification. Art that practices care, shared responsibility, and diversity in the pursuit of eco-centric cultures. Although this paper mainly references visual art forms, this should not be taken to exclude others. Here I am primarily concerned with identifying some of the possible forms of ecological or eco-art. This is art practiced by artist and inventors in the manner of the archetype of Daedalus and worthy of the name implied by the root of the word art. Rt, an ancient term from the Rg Vedas, refers to the virtuous, continuing creation of the cosmos. [End Page 143] Seeing is Believing/ Uncertainty in View The suffix species nova is ascribed by scientists to a new bacterium species, prior to the confirmation of its existence in the appropriate academic journals. The word species means "to look" and "a class of things, living organisms capable of exchanging genes, classified as a taxonomic rank below a genus and denoted by a Latin binomial." It also refers to "the visible form of each of the elements of consecrated bread and wine in the Eucharist." Nova refers to the mistaken sighting of a new star, a flash of brightness that quickly dims. Something novel is a new kind of nature, something strange or previously unknown, and novelty refers to invention. Species nova: two words that evoke ideas about innovations of visual experience and belief.I use the phrase to denote the potential for understanding a new order and evolutionary change—"to see anew." I am also aware that species nova could mean a mistaken religious experience, or a class of living things that flashes brightly and quickly dims. Uncertainty is embedded in the richness of meanings.It is ten years since the Earth Summit in Rio popularized the notion of sustainable development and introduced Agenda 21 as a strategy to achieve it. Sadly, culture and art, two of the systems that define humanity, were not mentioned among the necessary tools for building a better future.But what is sustainable development? Is it about conservation, restoration, or regeneration? Will it stop global warming and feed the poor, or is it like candyfloss—a confection of transient comfort, with no real meaning? Has it become a corrupt cultural construct, an anthropocentric myth in the vain pursuit of hope?Recently the Intergovernmental Panel on Climate Change confirmed that "most of the warming observed over the past 50 years is attributable to human activities." However, the projections and models that have been developed for policy makers to envisage climate change scenarios demonstrate the limits of our ability to understand the situation, let alone adapt to it. A recent review in Nature, comparing two twenty-year forecasts ironically concluded: Uncertainties therefore remain that are beyond the statistical uncertainties described in the two papers. But both sets of authors point out that the upper bound on the potential warming for 2100 may well be [End Page 144] above the IPCC figure of 5.8K under 'heavy emissions' scenarios. So policy-makers should not discount the possibility of a very warm climate considering long-range policy options. (Funnel 2001, 5) A subsequent article in Nature's Climate Change Review reveals even more concern about communicating scientific uncertainty, because models that simulate long-term climate changes cannot be tested using real... (shrink)

Although the intrinsic physicality of human beings has not changed in millennia, the species has managed to profoundly reconstitute the physical and social world it inhabits. Although the word “profound” is insufficient to describe the vast changes our world has undergone, it is sufficiently neutral to encompass both the opportunities—and the challenges—that our age provides. It is a premise of my work that technology, particularly information and communication technology (ICT), offers spectacular opportunities for humankind to address its collective (...) problems. The problems themselves are equally spectacular that is war and militarism, poverty, environmental depletion and destruction, disease, etc., and lack of successful alleviation may prove catastrophic. Humankind’s problems will not be solved by elite fiat, by chance, or as a side-effect of the “free market.” To address these challenges effectively and appropriately, “civic intelligence” will be required. This paper is designed to explore the relation between community networks and the nascent concept of civic intelligence. Civic intelligence describes the capacity of society to consciously adapt to its environment and shape a future environment that is healthy, equitable, and sustainable. Although individuals contribute to civic intelligence, the concept describes a phenomenon that is collective and distributed. This paper argues that community networks were an important manifestation of civic intelligence in the early days of the Internet revolution. It further argues that a theory of civic intelligence can be used to account for the declining influence of traditional community networks and to provide useful prescriptions for renewed vitality and influence of community networks in the future. (shrink)

Abstract The ‘species problem’ in the philosophy of biology concerns the nature of species. Various solutions have been proposed, including arguments that species are sets, classes, natural kinds, individuals, and homeostatic property clusters. These proposals parallel debates in ecology as to the ontology and metaphysics of populations, communities and ecosystems. A new solution—that species are processes—is proposed and defended, based on Robert Ulanowicz’s metaphysics of process ecology. As with ecological systems, species can be understood as (...) emergent, autocatalytic systems with propensities for centripetality and mutuality in the course of dynamically balancing ascendency (order and persistence) and overhead (randomness and change). The species-as-processes perspective accords with the Ulanowicz’s postulates of process ecology and it can be accommodated by existing theories of species—particularly in a reframing of Richard Boyd’s metaphysics such that species are homeostatic process clusters. Rather than contending that process-based metaphysics is the only, best or true account of species, a pluralist-realist approach is advocated based on the pragmatic principles that are reflected in modern view of species and ecology. If species are understood to be comprised of processes and to be emergent processes themselves, there are important implications for the life sciences, including: animal models in medical and environmental studies, conservation biology, extinction, biodiversity, restoration ecology, and evolutionary biology. Content Type Journal Article Category Invited Paper Pages 1-30 DOI 10.1007/s10516-011-9169-5 Authors Jeffrey A. Lockwood, Department of Philosophy, University of Wyoming, Laramie, WY 82071, USA Journal Axiomathes Online ISSN 1572-8390 Print ISSN 1122-1151. (shrink)

In this paper, I critically assess Mark Richard’s interesting and important development of the claim that linguistic meanings can be fruitfully analogized with biological species. I argue that linguistic meanings qua cluster of interpretative presuppositions need not and often do not display the population-level independence and reproductive isolation that is characteristic of the biological species concept. After developing these problems in some detail, I close with a discussion of their implications for the picture that Richard paints concerning the (...) dangers of conceptual engineering and the prospects for dynamic notions of semantic stability. (shrink)

Biopolitical analyses of census -taking usually focus on human censuses and consider how human experience is shaped by the practice. Instead, this article looks at the proposed global biodiversity census, which aims to take inventory of every species on earth as a response to anthropogenic species extinction. I suggest that it is possible to extend and modify Foucault's concept of biopower to consider contemporary human-nonhuman interactions. Specifically, I argue that an ecologically-extended version of biopower offers a useful way (...) to conceptualise how power circulates in the practices that surround the biodiversity census, and that it points us towards thinking about how analyses of power, authority, and community can consider ecological, rather than purely human, locations and networks. (shrink)

New techniques for the genetic modification of organisms are creating new strategies for addressing persistent public health challenges. For example, the company Oxitec has conducted field trials internationally—and has attempted to conduct field trials in the United States—of a genetically modified mosquito that can be used to control dengue, Zika, and some other mosquito-borne diseases. In 2016, a report commissioned by the National Academies of Sciences, Engineering, and Medicine discussed the potential benefits and risks of another strategy, using gene drives. (...) Driving a desired genotype through a population of wild animals or insects could lead to irreversible genetic modification of an entire species. The NASEM report recommends community, stakeholder, and public engagement about potential uses of the technology, and it argues that the engagement should occur as research advances, well before gene drives are deployed. Yet what “engagement” means in practice is unclear. This article seeks clarity on this problem by offering a justification for community engagement and drawing out implications of this argument for the implementation and desired outcomes of community engagement. Community engagement is essential when it comes to research that would release genetically modified insects or animals into the environment. By contrast, obtaining informed consent from people who live near such a proposed field trial is neither necessary nor sufficient. Drawing on the epistemic and moral arguments for deliberative democracy, I propose two discrete mechanisms of community engagement: community advisory boards and deliberative forums, neither of which has been systematically incorporated into research governance. The proposed mechanisms would engender respect for persons who live near field trials, even when the results of deliberation override some individuals’ preferences. Community engagement foregrounds the community in our thinking about humans’ relationship to nature, and it implies that deciding to release genetically modified insects or animals into the wild ought to be a collective decision, not one made by product developers, policy-makers, private companies, research funders, or scientists alone. (shrink)

Communication, when defined as an act intended to affect the psychological state of another individual, demands the use of inference. Either the signaler, the recipient, or both must make leaps of understanding which surpass the semantic information available and draw from pragmatic clues to fully imbue and interpret meaning. While research into human communication and the evolution of language has long been comfortable with mentalistic interpretations of communicative exchanges, including rich attributions of mental state, research into animal (...) class='Hi'>communication has balked at theoretical models which describe mentalized cognitive mechanisms. We submit a new theoretical perspective on animal communication: the model of inferential communication. For use when existing proximate models of animal communication are not sufficient to fully explain the complex, flexible, and intentional communication documented in certain species, specifically non-human primates, we present our model as a bridge between shallower, less cognitive descriptions of communicative behavior and the perhaps otherwise inaccessible mentalistic interpretations of communication found in theoretical considerations of human language. Inferential communication is a framework that builds on existing evidence of referentiality, intentionality, and social inference in primates. It allows that they might be capable of applying social inferences to a communicative setting, which could explain some of the cognitive processes that enable the complexity and flexibility of primate communication systems. While historical models of animal communication focus on the means-ends process of behavior and apparent cognitive outcomes, inferential communication invites consideration of the mentalistic processes that must underlie those outcomes. We propose a mentalized approach to questions, investigations, and interpretations of non-human primate communication. We include an overview of both ultimate and proximate models of animal communication, which contextualize the role and utility of our inferential communication model, and provide a detailed breakdown of the possible levels of cognitive complexity which could be investigated using this framework. Finally, we present some possible applications of inferential communication in the field of non-human primate communication and highlight the role it could play in advancing progress toward an increasingly precise understanding of the cognitive capabilities of our closest living relatives. (shrink)

Recently, invasion biologists have argued that some of the skepticism expressed in the scientific and lay literatures about the risks of invasive species and other aspects of the consensus within invasion biology is a kind of science denialism. This paper presents an argument that, while some claims made by skeptics of invasion biology share important features with paradigm cases of science denialism, others express legitimate ethical concerns that, even if one disagrees, should not be dismissed as denialist. Further, this (...) case illustrates a more general point about ethical disagreement within sciences like invasion biology that constitutively pursue non-epistemic goals and values. While philosophers of science have argued that epistemic disagreement within science can be productive as heterogeneous epistemic communities “hedge their bets,” the case of invasion biology shows how non-epistemic or ethical disagreement within sciences, while carrying significant risks, can also be epistemically and non-epistemically valuable. (shrink)

Within the last 20 years, the US has mounted amassive campaign against invasions bynon-indigenous species (NIS) such as zebramussels, kudzu, water hyacinths, and brown treesnakes. NIS have disrupted native ecosystemsand caused hundreds of billions of dollars ofannual damage. Many in the scientificcommunity say the problem of NIS is primarilypolitical and economic: getting governments toregulate powerful vested interests thatintroduce species through such vehicles asships' ballast water. This paper argues that,although politics and economics play a role,the problem is primarily one (...) of scientificmethod. Even if commercial interests werewilling to spend the necessary funds to controlNIS, and even if government were willing toregulate them, ecological theory is notadequate to provide clear direction for eithereffort. The paper argues there is nocomprehensive, predictive theory ofinvasibility, as part of a larger theory ofcommunity structure, that might guideecological decision making regarding NIS, andfor at least three reasons. (1) There is nofirm definition of NIS, native, exotic,and so on, and ecologists do not use the termsconsistently; as a result, biologists debatingvarious accounts of community structure andecological explanation often do not even makelogical contact with each other. (2) Thedominant theory used to understandinvasibility, island biogeography, has noprecise predictive power and is unable toclarify when NIS might promote biodiversity andwhen they might hinder it. (3) There are nofirm, empirical generalizations that revealwhen a colonizer or a NIS might be likely totake over a new environment, and when it mightnot succeed in doing so. As a result,scientists have only rough rules of thumb toshore up their arguments against NIS. Given theincompleteness of current ecological theory,the paper closes with several suggestions forways that study of NIS might enhanceunderstanding of basic commmunity structuresand vice versa. (shrink)

Seeking a scientific basis for understanding and treating mental illness, and inspired by the work of Ivan Pavlov, American physiologists, psychiatrists and psychologists in the 1920s turned to nonhuman animals. This paper examines how new constructs such as “experimental neurosis” emerged as tools to enable psychiatric comparison across species. From 1923 to 1962, the Cornell “Behavior Farm” was a leading interdisciplinary research center pioneering novel techniques to experimentally study nonhuman psychopathology. Led by the psychobiologist Howard Liddell, work at the (...) Behavior Farm formed part of an ambitious program to develop new preventative and therapeutic techniques and bring psychiatry into closer relations with physiology and medicine. At the heart of Liddell’s activities were a range of nonhuman animals, including pigs, sheep, goats and dogs, each serving as a proxy for human patients. We examine how Pavlov’s conceptualization of ‘experimental neurosis’ was used by Liddell to facilitate comparison across species and communication between researchers and clinicians. Our close reading of his experimental system demonstrates how unexpected animal behaviors and emotions were transformed into experimental virtues. However, to successfully translate such behaviors from the animal laboratory into the field of human psychopathology, Liddell increasingly reached beyond, and, in effect, redefined, the Pavlovian method to make it compatible and compliant with an ethological approach to the animal laboratory. We show how the resultant Behavior Farm served as a productive “hybrid” place, containing elements of experiment and observation, laboratory and field. It was through the building of close and more naturalistic relationships with animals over extended periods of time, both normal and pathological, and within and outside of the experimental space, that Liddell could understand, manage, and make useful the myriad behavioral complexities that emerged from the life histories of experimental animals, the researchers who worked with them, and their shared relationships to the wider physical and social environments. (shrink)

The Endangered Species Act of 1973 (ESA) is America's strongest environmental law. Its citizen-suit provisionany personawards implicit intrinsic value, de facto standing, and operational legal rights (sensu Christopher D. Stone) to listed species. Accordingly, some cases had gone forward in the federal courts in the name of various listed species between 1979 (Palila v. Hawaii Dept. of Land & Natural Resources) and 2004 (Cetacean Community v. Bush), when the Ninth Circuit Court of Appeals ruled that animals could (...) not sue in their own name. Because the Supreme Court has interpreted its habitat destruction as the of a listed species, some have argued that enforcement of the ESA's critical-habitat-protection provision is a of private property without just compensation, contrary to the Fifth Amendment of the Constitution. The courts have not agreed. The ESA citizen-suit provision appears to waive federal-court standing requirements devolved from Article III of the U.S. Constitution, creating much confusion and mutually contradictory rulings. A series of cases (culminating with Bennett v. Spear) reconciles the ESA's citizen-suit provision with the particularized and concrete standing requirements devolved from Article III. (shrink)

Recent research on bacteria and other microorganisms has provided interesting insights into the nature of life, cooperation, evolution, individuality or species. In this paper, I focus on the capacity of bacteria to produce molecules that are usually classified as ’signals’ and I defend two claims. First, I argue that certain interactions between bacteria should actually qualify as genuine forms of communication. Second, I use this case study to revise our general theories of signaling. Among other things, I argue (...) that a plausible requirement for a state to qualify as a signal is that it is a minimal cause. (shrink)

There are two facts about word learning that everyone accepts. The first is that words really do have to be learned. There is controversy over how much conceptual structure and linguistic knowledge is innate, but nobody thinks that this is the case for the specific mappings between sounds (or signs) and meanings. This is because these mappings vary arbitrarily from culture to culture. No matter how intelligent a British baby is, for instance, she still has to learn, by attending to (...) the language of the people around her, that rabbits are called ‘rabbits’, that sleeping is called ‘sleeping’, and so on. (shrink)

It has become increasingly clear that social learning and culture occur much more broadly, and in a wider variety of animal communities, than initially believed. Recent research has expanded the list to include insects, fishes, elephants, and cetaceans. Such diversity allows scientists to expand the scope of potential research questions, which can help form a more complete understanding of animal culture than any single species can provide on its own. It is crucial to understand how culture and social learning (...) present in different communities, as well as what influences community structure and culture may have on one another, so that the results across these different studies may most effectively inform one another. This review presents an overview of social learning in species across a spectrum of community structures, providing the necessary infrastructure to allow a comparison of studies that will help move the field of animal culture forward. (shrink)

A growing body of empirical research suggests many animal species are capable of social learning and even have cultural behavioral traditions. Social learning has implications for community ecology; changes in behavior can lead to changes in inter- and intra-specific interactions. The paper explores possible implications of social learning for ecological community dynamics. Four arguments are made: social learning can result in locally-specific ecological relationships; socially-mediated, locally-specific ecological relationships can have localized indirect interspecific population effects; the involvement of multiple co-existing (...) species in socially learned, locally-specific behavior has the potential to create community-wide effects, including varying levels of stability and instability; and social learning can create new intra- and inter-specific selection pressures on local taxa, potentially resulting in rapid evolution. Implications of all four arguments are discussed in relation to community ecology research and modeling. (shrink)

Communication Studies currently undergoes a crisis of paradigms that requires an ontological review that must begin with a debate about the conditions of possibility of every communicational phenomena. In this article we argue that semiosis offers a conceptual framework that allows for the study of communication as qualitative action. Semiosis, or the action of the sign, is here defined as a fundamental process based on perception that models the world of species, creating cognition and culture. At the (...) core of semiosis are dynamic structures that the authors have defined as ‘ontological diagrams’. The first purpose of Semiotics of Communication is to understand how these modeling systems evolve ontologically and phylogenically, producing, in the case of human culture, means of communication ever more varied and technologically advanced. (shrink)

This paper examines recent communitarian writing about the market. Much of this work explains the loss of community in our times as a result of the expansion of the market and market values. As the market has invaded other domains, such as family andneighborhood, relationships there have become infected by the instability and transience that characterize market relations. Centralto this critique of the market is the view that the market is unable to sustain lasting commitments. This paper tests this hypothesis (...) byexamining the fate of the family—the paradigmatic case of commitment—in three separate historical periods when market orcommercial values were especially dominant. It then extends the analysis to two other component institutions of community—voluntaryand charitable activities. Finally, it examines institutions where so-called market values should presumably hold unchallenged sway,namely in the work place and the marketplace. The paper finds that communitarian values appear to thrive in market society. Instead ofbeing a juggernaut the market may be an endangered species. (shrink)

Denying special traits like the use of language to nonhuman animals has often been a basis for the creation of a stand-alone human sphere, apart from and above the animal world and the environmental milieu. Merleau-Ponty's phenomenology shows that human communication arises from the semiosis in the extra-human world and is not self-contained. Given many recent insights in scientific studies of nonhuman animals, only a few of which are cited here, it becomes impossible to say that animals are mute, (...) reactive entities. They too share many of the same features of communication with human beings. That said, articulating an interspecies ethic of sympathy or concern must take into account species and individual differences. (shrink)

The organism is one of the fundamental concepts of biology and has been at the center of many discussions about biological individuality, yet what exactly it is can be confusing. The definition that we find generally useful is that an organism is a unit in which all the subunits have evolved to be highly cooperative, with very little conflict. We focus on how often organisms evolve from two or more formerly independent organisms. Two canonical transitions of this type—replicators clustered in (...) cells and endosymbiotic organelles within host cells—demonstrate the reality of this kind of evolutionary transition and suggest conditions that can favor it. These conditions include co-transmission of the partners across generations and rules that strongly regulate and limit conflict, such as a fair meiosis. Recently, much attention has been given to associations of animals with microbes involved in their nutrition. These range from tight endosymbiotic associations like those between aphids and Buchnera bacteria, to the complex communities in animal intestines. Here, starting with a reflection about identity through time, we consider the distinctions between these kinds of animal–bacteria interactions and describe the criteria by which a few can be considered jointly organismal but most cannot. (shrink)

The alien invasive Red King Crab in the Barents Sea represents both a threat, via ecosystem impacts, and a gain as a revenue source from food sales. Uncertainties exist regarding the ecological impacts but debate in Norway has also emphasised the economic benefits to marginalised fisher communities. This paper reports on a Q-methodology study involving key stakeholders to probe the extent to which divisions exist between different groups. While divisions are indeed found and two groupings identified, these are not as (...) clear as suggested by the lines typically portrayed in the media and elsewhere -, i.e. economic gains versus ecological preservation. Stakeholder groups reported here generally agreed that biodiversity concerns should be central and that further invasion was undesirable due to potential impacts on ecosystem services. (shrink)

The Shannon information function (H) has been extensively used in ecology as a statistic of species diversity. Yet, the use of Shannon diversity index has also been criticized, mainly because of its ambiguous ecological interpretation and because of its relatively great sensitivity to the relative abundances of species in the community. In my opinion, the major shortcoming of the traditional perspective (on the possible relation of species diversity with information theory) is that species need for an (...) external receiver (the scientist or ecologist) to exist and transmit information. Because organisms are self-catalized replicating structures that can transmit genotypic information to offspring, it should be evident that any single species has two possible states or alternatives: to be or not to be. In other words, species have no need for an external receiver since they are their own receivers. Therefore, the amount of biological information (at the species scale) in a community with one only species would be species, and not bits as in the traditional perspective. Moreover, species diversity appears to be a monotonic increasing function of (or S) when all species are equally probable (S being species richness), and not a function of as in the traditional perspective. To avoid the noted shortcoming, we could use 2H (instead of H) for calculating species diversity and species evenness (= 2H/S). However, owing to the relatively great sensitivity of H to the relative abundances of species in the community, the value of species dominance (= 1 − 2H/S) is unreasonably high when differences between dominant and subordinate species are considerable, thereby lowering the value of species evenness and diversity. This unsatisfactory behaviour is even more evident for Simpson index and related algorithms. I propose the use of other statistics for a better analysis of community structure, their relationship being: species evenness + species dominance = 1; species diversity × species uniformity = 1; and species diversity = species richness × species evenness. (shrink)

We examine the evolution of the concept of stability in community ecology, arguing that biologists have moved from an emphasis on biotic communities characterized by static balance, to one of dynamic balance (returning to equilibrium after perturbation), to the current concept of stability as persistence. Using Wimsatt's (1987) analysis of how false models can often lead to better ones, we argue that failed attempts to link complexity with stability have significant heuristic value for community ecologists. Nevertheless, we argue that, (A) (...) because there is no common characteristic that stability terms presuppose, community ecology might be better served by abandoning the concept of stability and by employing instead specific terms such as 'persistence', 'resistance', and 'variability'. (B) The current emphasis (of stability terms) on persistence of species provides little basis for explaining possible mechanisms that might account for persistence. (shrink)

The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies. This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. It also provides details of the methodology and rationale behind our revision and expansion of the PO to cover development stages for all plants, particularly (...) the land plants (bryophytes through angiosperms). As a case study to illustrate the general approach, we examine variation in gene expression across embryo development stages in Arabidopsis and maize, demonstrating how the PO can be used to compare patterns of expression across stages and in developmentally different species. Although many genes appear to be active throughout embryo development, we identified a small set of uniquely expressed genes for each stage of embryo development and also between the two species. Evaluating the different sets of genes expressed during embryo development in Arabidopsis or maize may inform future studies of the divergent developmental pathways observed in monocotyledonous versus dicotyledonous species. The PO and its annotation databasemake plant data for any species more discoverable and accessible through common formats, thus providing support for applications in plant pathology, image analysis, and comparative development and evolution. (shrink)

A community, for ecologists, is a unit for discussing collections of organisms. It refers to collections of populations, which consist (by definition) of individuals of a single species. This is straightforward. But communities are unusual kinds of objects, if they are objects at all. They are collections consisting of other diverse, scattered, partly-autonomous, dynamic entities (that is, animals, plants, and other organisms). They often lack obvious boundaries or stable memberships, as their constituent populations not only change but also move (...) in and out of areas, and in and out of relationships with other populations. Familiar objects have identifiable boundaries, for example, and if communities do not, maybe they are not objects. Maybe they do not exist at all. The question this possibility suggests, of what criteria there might be for identifying communities, and for determining whether such communities exist at all, has long been discussed by ecologists. This essay addresses this question as it has recently been taken up by philosophers of science, by examining answers to it which appeared a century ago and which have framed the continuing discussion. (shrink)

We argue that ecologists have conceived of the community concept in at least three ways, and that ecologists have used “community,” as indicated by ecological terminology, in two main ways. The typological conception emphasizes phenomenological descriptions of co-occurring species, the functional conception emphasizes mathematical relationships among co-occurring species, and the statistical conception emphasizes the frequency of species’ co-occurrence. The type usage emphasizes idealized “types,” and the group usage emphasizes quantitative boundaries and/or mathematically precise interactions. We further argue (...) that all of these senses of “community” are problematic. Ecologists seem unable to say precisely what a community is, in part because of the difficulty of measuring community properties, determining the temporal and spatial scale for various communities, and evaluating the different meanings attributed to community terms. We suggest that although and appear to be difficulties that are heuristically useful for future ecological theorizing, does not. (shrink)

It is sometimes argued that while human gestures are produced ostensively and intentionally, great ape gestures are produced only intentionally. If true, this would make the psychological mechanisms underlying the different species’ communication fundamentally different, and ascriptions of meaning to chimpanzee gestures would be inappropriate. While the existence of different underlying mechanisms cannot be ruled out, in fact claims about difference are driven less by empirical data than by contested assumptions about the nature of ostensive communication. On (...) some accounts, there are no reasons to doubt that great ape gestural communication is ostensive. If these accounts are correct, attributions of meaning to chimpanzee gestures would be justified. (shrink)

Any biological species of biparental organisms necessarily includes, and is fundamentally dependent on, sign processes between individuals. In this case, the natural category of the species is based on family resemblances, which is why a species is not a natural kind. We describe the mechanism that generates the family resemblance. An individual recognition window and biparental reproduction almost suffice as conditions to produce species naturally. This is due to assortativity of mating which is not based on (...) certain individual traits, but on the difference between individuals. The biosemiotic model described here explains what holds a species together. It also implies that boundaries of a species are fundamentally fuzzy, and that character displacement occurs in case of sympatry. Speciation is a special case of discretisation that is an inevitable result of any communication system in work. The biosemiotic mechanism provides the conditions and communicative restrictions for the origin and persistence of diversity in the realm of living systems. (shrink)

Lists of species underpin many fields of human endeavour, but there are currently no universally accepted principles for deciding which biological species should be accepted when there are alternative taxonomic treatments (and, by extension, which scientific names should be applied to those species). As improvements in information technology make it easier to communicate, access, and aggregate biodiversity information, there is a need for a framework that helps taxonomists and the users of taxonomy decide which taxa and names (...) should be used by society whilst continuing to encourage taxonomic research that leads to new species discoveries, new knowledge of species relationships, and the refinement of existing species concepts. Here, we present 10 principles that can underpin such a governance framework, namely (i) the species list must be based on science and free from nontaxonomic considerations and interference, (ii) governance of the species list must aim for community support and use, (iii) all decisions about list composition must be transparent, (iv) the governance of validated lists of species is separate from the governance of the names of taxa, (v) governance of lists of accepted species must not constrain academic freedom, (vi) the set of criteria considered sufficient to recognise species boundaries may appropriately vary between different taxonomic groups but should be consistent when possible, (vii) a global list must balance conflicting needs for currency and stability by having archived versions, (viii) contributors need appropriate recognition, (ix) list content should be traceable, and (x) a global listing process needs both to encompass global diversity and to accommodate local knowledge of that diversity. We conclude by outlining issues that must be resolved if such a system of taxonomic list governance and a unified list of accepted scientific names generated are to be universally adopted. (shrink)

Gene editing technologies such as CRISPR hold the promise to solve many of the challenges in industrial salmon farming. However, for the technology to be taken into use, it has to be deemed socially and morally acceptable. Whereas older gene modification technologies have been met with much public resistance, there are hopes that CRISPR might change the debate, since it does not require inserting genes from other organisms and can therefore be considered less invasive and more natural. Though the concept (...) of naturalness is contested, it is frequently appealed to in science communication and explanations of why the public should be more inclined to accept CRISPR-edited organisms than GMOs. Farmed salmon is a good case for considering our intuitions about naturalness, since it is a recently domesticated species, far removed from its cousin in the wild. The study presented here consists of 19 interviews with stakeholders and 4 focus groups with consumers. A major finding is that the concept of naturalness is not considered crucial when it comes to determining the acceptability of using CRISPR on farmed salmon; what is significant is rather whether its use is consistent with a respectful treatment of them. (shrink)

Individuals of some animal species have been taught simple versions of human language despite their natural communication systems failing to rise to the level of a simple language. How is it, then, that some animals can master a version of language, yet none of them deploy this capacity in their own communication system? I first examine the key design features that are often used to evaluate language-like properties of natural animal communication systems. I then consider one (...) candidate animal system, bird song, because it has several of the key design features or their precursors, including social learning and cultural transmission of their vocal signals. I conclude that although bird song communication is nuanced and complex, and has the acoustic potential for productivity, it is not productive – it cannot be used to say many different things. Finally, I discuss the debate over whether animal communication should be viewed as a cooperative information transmission process, as we typically view human language, or as a competitive process where signaler and receiver vie for control. The debate points to a necessary condition for the evolution of a simple language that has generally been overlooked: the degree of to which the interests of the signaler and receiver align. While strong cognitive and signal production mechanisms are necessary pre-adaptations for a simple language, they are not sufficient. Also necessary is the existence of identical or near-identical interests of signaler and receiver and a socio-ecology that requires high-level cooperation across a range of contexts. In the case of our hominid ancestors, these contexts included hunting, gathering, child care and, perhaps, warfare. I argue that the key condition for the evolution of human language was the extreme interdependency that existed among unrelated individuals in the hunter-gatherer societies of our hominid ancestors. This extreme interdependency produced multiple prosocial adaptations for effective intragroup cooperation, which in partnership with advanced cognitive abilities, set the stage for the evolution of language. (shrink)