Causal Reasoning, Misc

Causation is one of philosophy's most venerable and thoroughly-analyzed concepts. However, the study of how ordinary people make causal judgments is a much more recent addition to the philosophical arsenal. One of the most prominent views of causal explanation, especially in the realm of harmful or potentially harmful behavior, is that unusual or counternormative events are accorded privileged status in ordinary causal explanations. This is a fundamental assumption in psychological theories of counterfactual reasoning, and has been transported to philosophy by (...) Hitchcock and Knobe (2009). A different view--the basis of the culpable control model of blame (CCM)--is that primary causal status is accorded to behaviors that arouse negative evaluative reactions, including behaviors that stem from nefarious motives, negligence or recklessness, a faulty character, or behaviors that lead to harmful or potentially harmful consequences. This paper describes four empirical studies that show consistent support for the CCM. (shrink)

This is a commentary on Mathias Frisch's book Causal Reasoning in Physics (Cambridge 2014). This commentary was presented at the 2016 Pacific Division Meeting of the American Philosophical Association in a session sponsored by the Society for the Metaphysics of Science.

Tight correlations between mental states and brain states have been observed time and again within the ethology of biologically ingrained animal behaviors, the comparative psychology of animal minds, the evolutionary psychology of mental adaptations, the behavioral genetics of inherited mental traits, the developmental psychology of the maturing mind, the psychopharmacology of mind-altering substances, and cognitive neuroscience more generally. They imply that our mental lives are only made possible because of brain activity—that having a functioning brain is a necessary condition for (...) having conscious experiences. This mind-brain dependence thesis yields predictions that have been spectacularly confirmed by the evidence, whereas its antithesis has been massively disconfirmed—at least so long as it is not formulated so vaguely as to yield no specific empirical consequences at all. Dualists are thus forced to make a difficult choice: either retain a belief in personal survival at the expense of ignoring or dismissing the implications of our best evidence, or accept those implications at the expense of acknowledging that the prospects for personal survival are extremely dim. -/- 1. Introduction: A Probabilistic Argument -- 2. Scientific Reasoning I: Mill’s Methods and Modern Epidemiological Principles - 2.1 When Correlation Indicates Causation -- 3. Scientific Reasoning II: Inference to the Best Explanation, Testability, and Predictive Success - 3.1 Parsimony: Tempering Explanations to Minimize False Beliefs - 3.2 Plausibility: Harmonizing Explanations with Background Knowledge - 3.3 Testability and Confirmation: Checking Hypotheses Against the Data - 3.3.1 Confirmation of the Dependence Thesis from Failed Attempts to Falsify It - 3.3.2 Confirmation of the Dependence Thesis from the Falsification of its Rival - 3.4 Scope: Bringing Disparate Facts Together - 3.5 Fertility: Generating New Lines of Research - 3.6 Overview -- 4. Scientific Reasoning III: Bayesian and Information-Theoretic Approaches - 4.1 Bayesian Probability - 4.2 Bayesian Confirmation Theory - 4.3 A Bayesian Approach to the Dependence and Independence Theses - 4.4 The Probabilistic Price of Ad Hoc Accommodation: Simplicity vs. Goodness of Fit - 4.4.1 Simplicity Reflected in the Likelihood - 4.4.2 Simplicity Reflected in the Prior Probability - 4.5 Prediction vs. Accommodation - 4.6 Bayesian Analysis of the Dependence and Independence Theses -- 5. The Dualist’s Dilemma: Reject Science, or Reject Personal Survival? - 5.1 What’s Left for a Soul to Do? -- 6. Conclusion. (shrink)

Inductive reasoning is fundamental to human cognition, yet it remains unclear how we develop this ability and what might influence our inductive choices. We created novel categories in which crucial factors such as domain and category structure were manipulated orthogonally. We trained 403 4–9-year-old children to categorise well-matched natural kind and artefact stimuli with either featural or relational category structure, followed by induction tasks. This wide age range allowed for the first full exploration of the developmental trajectory of inductive reasoning (...) in both domains. We found a gradual transition from perceptual to categorical induction with age. This pattern was stable across domains, but interestingly, children showed a category bias one year later for relational categories. We hypothesise that the ability to use category information in inductive reasoning develops gradually, but is delayed when children need to process and apply more complex category structures. (shrink)

Addresses the substantive issues raised by J. E. Staddon's (see record 1985-04009-001) alternative models of causality, in response to Staddon's displeasure with what he claimed to be the present author's (see record 1983-22326-001) formalization of causal structures. The major question at issue is not the formalizability of causal processes but whether cognitive determinants of behavior are reducible to past stimulus inputs in causal structures. Evidence indicates that the residuum of past stimuli cannot serve as an adequate proxy for cognitive processes, (...) which largely involve propositional knowledge and cognitive operations on what one knows. (shrink)

According to the transitive dynamics model, people can construct causal structures by linking together configurations of force. The predictions of the model were tested in two experiments in which participants generated new causal relationships by chaining together two (Experiment 1) or three (Experiment 2) causal relations. The predictions of the transitive dynamics model were compared against those of Goldvarg and Johnson-Laird’s model theory (Goldvarg & Johnson- Laird, 2001). The transitive dynamics model consistently predicted the overall causal relationship drawn by participants (...) for both types of causal chains, and, when compared to the model theory, provided a better fit to the data. The results suggest that certain kinds of causal reasoning may depend on force dynamic—rather than on logical or purely statistical—representations. (shrink)

The first part of this paper shows that Qualitative Comparative Analysis (QCA)--also in its most recent forms as presented in Ragin (2000, 2008)--, does not correctly analyze data generated by causal chains, which, after all, are very common among causal processes in the social sciences. The incorrect modeling of data originating from chains essentially stems from QCA’s reliance on Quine-McCluskey optimization to eliminate redundancies from sufficient and necessary conditions. Baumgartner (2009a,b) has introduced a Boolean methodology, termed Coincidence Analysis (CNA), that (...) is related to QCA, yet, contrary to the latter, does not eliminate redundancies by means of Quine-McCluskey optimization. The second part of the paper applies CNA to chain-generated data. It will turn out that CNA successfully detects causal chains in small-N data. (shrink)

This paper addresses a problem that arises when it comes to inferring deterministic causal chains from pertinent empirical data. It will be shown that to every deterministic chain there exists an empirically equivalent common cause structure. Thus, our overall conviction that deterministic chains are one of the most ubiquitous (macroscopic) causal structures is underdetermined by empirical data. It will be argued that even though the chain and its associated common cause model are empirically equivalent there exists an important asymmetry between (...) the two models with respect to model expansions. This asymmetry might constitute a basis on which to disambiguate corresponding causal inferences on non-empirical grounds. (shrink)

The first part of this paper argues that if Craver’s ([2007a], [2007b]) popular mutual manipulability account (MM) of mechanistic constitution is embedded within Woodward’s ([2003]) interventionist theory of causation--for which it is explicitly designed--it either undermines the mechanistic research paradigm by entailing that there do not exist relationships of constitutive relevance or it gives rise to the unwanted consequence that constitution is a form of causation. The second part shows how Woodward’s theory can be adapted in such a way that (...) (MM) neither undermines the mechanistic paradigm nor reduces constitution to causation. However, it turns out that this modified theoretical embedding of (MM) makes it impossible to produce empirical evidence for constitutive relations. The paper ends by suggesting an additional criterion, the fat-handedness criterion, which, when combined with (MM), generates indirect empirical evidence for constitutive relevance. (shrink)

We present a logic, \, for the discovery of deterministic causal regularities starting from empirical data. Our approach is inspired by Mackie’s theory of causes as INUS-conditions, and implements a more recent adjustment to Mackie’s theory according to which the left-hand side of causal regularities is required to be a minimal disjunction of minimal conjunctions. To derive such regularities from a given set of data, we make use of the adaptive logics framework. Our knowledge of deterministic causal regularities is, as (...) Mackie noted, most often gappy or elliptical. The adaptive logics framework is well-suited to explicate both the internal and the external dynamics of the discovery of such gappy regularities. After presenting \, we first discuss these forms of dynamics in more detail. Next, we consider some criticisms of the INUS-account and show how our approach avoids them, and we compare \ with the CNA algorithm that was recently proposed by Michael Baumgartner. (shrink)

Causal conditional reasoning means reasoning from a conditional statement that refers to causal content. We argue that data from causal conditional reasoning tasks tell us something not only about how people interpret conditionals, but also about how they interpret causal relations. In particular, three basic principles of people's causal understanding emerge from previous studies: the modal principle, the exhaustive principle, and the equivalence principle. Restricted to the four classic conditional inferences—Modus Ponens, Modus Tollens, Denial of the Antecedent, and Affirmation of (...) the Consequent—causal conditional reasoning data are only partially able to support these principles. We present three experiments that use concrete and abstract causal scenarios and combine inference tasks with a new type of task in which people reformulate a given causal situation. The results provide evidence for the proposed representational principles. Implications for theories of the na ve understanding of causality are discussed. (shrink)

Despite recent efforts to improve on counterfactual theories of causation, failures to explain how effects depend on their causes are still manifest in a variety of cases. In particular, theories that do a decent job explaining cases of causal preemption have problems accounting for cases of causal intransitivity. Moreover, the increasing complexity of the counterfactual accounts makes it difficult to see why the concept of causation would be such a central part of our cognition. In this paper, I propose an (...) account of our causal thinking that not only explains the hitherto puzzling variety of causal judgments, but also makes it intelligible why we would employ such an elusive concept. (shrink)

Contrastivism can be applied to a variety of problems within philosophy, and as such, it can be coherently seen as a unified movement. This volume brings together state-of-the-art research on the contrastive treatment of philosophical concepts and questions, including knowledge, belief, free will, moral luck, Bayesian confirmation theory, causation, and explanation.

Since the late nineties there has been an increased interested in probabilistic logic learning, an area within AI that combines machine learning with logic-based knowledge representation and uncertainty reasoning. Several different formalisms for combining first-order logic with probability reasoning have been proposed, and it has been studied how models in these formalisms can be automatically learned from data. -/- This talk starts with a brief introduction to probabilistic logic learning, after which we will focus on a relatively new formalism known (...) as CP-logic. CP-logic stands for “causal probabilistic logic”. It is a knowledge representation formalism that allows us to write down rules that indicate that a certain combination of conditions may cause certain effects with a particular probability (e.g., tossing a coin may cause a result of heads or tails, each with 50% probability). Besides the fact that this formalism is interesting for knowledge representation in itself, it also offers interesting opportunities from the machine learning point of view. Indeed, given the semantics of these CP-logic programs, learning them from data amounts to extracting probabilistic causal influences from data. We will discuss recent research on learning CP-logic programs, including: algorithms for learning them; how they relate to graphical models; and applications of learning CP-logic programs. (shrink)

Decision-making typically requires judgments about causal relations: we need to know the causal effects of our actions and the causal relevance of various environmental factors. We investigate how several individuals' causal judgments can be aggregated into collective causal judgments. First, we consider the aggregation of causal judgments via the aggregation of probabilistic judgments, and identify the limitations of this approach. We then explore the possibility of aggregating causal judgments independently of probabilistic ones. Formally, we introduce the problem of causal-network aggregation. (...) Finally, we revisit the aggregation of probabilistic judgments when this is constrained by prior aggregation of qualitative causal judgments. (shrink)

Randomized controlled trials (RCTs) are widely taken as the gold standard for establishing causal conclusions. Ideally conducted they ensure that the treatment ‘causes’ the outcome—in the experiment. But where else? This is the venerable question of external validity. I point out that the question comes in two importantly different forms: Is the specific causal conclusion warranted by the experiment true in a target situation? What will be the result of implementing the treatment there? This paper explains how the probabilistic theory (...) of causality implies that RCTs can establish causal conclusions and thereby provides an account of what exactly that causal conclusion is. Clarifying the exact form of the conclusion shows just what is necessary for it to hold in a new setting and also how much more is needed to see what the actual outcome would be there were the treatment implemented. (shrink)

There is an ongoing debate in economics between the design-based approach and the structural approach. The main locus of contention regards how best to pursue the quest for credible causal inference. Each approach emphasizes one element ? sharp study designs versus structural models ? but these elements have well-known limitations. This paper investigates where a researcher might look for credibility when, for the causal question under study, these limitations are binding. It argues that seeking variety of evidence ? understood specifically (...) as using multiple means of determination to robustly estimate the same causal effect ? constitutes such an alternative and that applied economists actually take advantage of it. Evidential variety is especially relevant for a class of macro-level causal questions for which the design-based and the structural approaches appear to have limited reach. The use of evidential variety is illustrated by drawing on the literature on the institutional determinants of the aggregate unemployment rate. (shrink)

Newsome ((2003). The debate between current versions of covariation and mechanism approaches to causal inference. Philosophical Psychology, 16, 87-107.) recently published a critical review of psychological theories of human causal inference. In that review, he characterized covariation and mechanism theories, the two dominant theory types, as competing, and offered possible ways to integrate them. I argue that Newsome has misunderstood the theoretical landscape, and that covariation and mechanism theories do not directly conflict. Rather, they rely on distinct sets of reliable (...) indicators of causation, and focus on different types of causation (type vs. token). There are certainly debates in the research field, but the theoretical landscape is not as fractured as Newsome suggests, and a potential unifying framework has already emerged using causal Bayes nets. Philosophical work on causal epistemology matters for psychologists, but not in the way Newsome suggests. (shrink)

We make constant use of causal beliefs in our everyday lives without giving much thought to the source of those beliefs, even for situations about which we have no specific prior causal knowledge. We can ask two distinct types of questions about these causal judgments: descriptive questions and normative questions . The primary goal of this dissertation is to apply normative research on causal judgment to our descriptive theories. ;I begin this dissertation by describing the primary results of research on (...) the normative question: the framework of Bayesian networks, and algorithms that provably extract maximal causal information from observations and interventions in the environment. I then show that we can use the framework of Bayesian networks to represent the three major descriptive theories of causal judgment. The three theories are not directly comparable, however, since one of them is algorithmic, while the other two are computational. Therefore, I provide a fully general characterization of the Rescorla-Wagner model. ;With this computational description of the Rescorla-Wagner model in hand, we can compare all three of the theories against the known experimental data. Unfortunately, the experimental data has all been obtained using one particular experimental methodology, which contains serious problems. In addition to critiquing the currently dominant methodology, I provide a "proof of concept" of a different methodology that does not face these problems. ;More importantly, the psychological theories all focus on parameter estimation in a fixed causal structure, rather than learning the actual structure. Therefore, I consider the experimental question: can people learn complex causal structures? The data from those experiments reveal that people appear to use a wide array of learning strategies. The epistemology of our causal beliefs is substantially more complex than has previously been thought. ;Finally, at the end of this dissertation, I step back and examine the implications of these experimental results for descriptive theories of causal judgment. I also point towards several open research questions, both descriptive and normative, raised by the work in this dissertation. (shrink)

There have recently been a number of strong claims that normative considerations, broadly construed, influence many philosophically important folk concepts and perhaps are even a constitutive component of various cognitive processes. Many such claims have been made about the influence of such factors on our folk notion of causation. In this paper, we argue that the strong claims found in the recent literature on causal cognition are overstated, as they are based on one narrow type of data about a particular (...) type of causal cognition; the extant data do not warrant any wide-ranging conclusions about the pervasiveness of normative considerations in causal cognition. Of course, almost all empirical investigations involve some manner of ampliative inference, and so we provide novel empirical results demonstrating that there are types of causal cognition that do not seem to be influenced by moral considerations. (shrink)

One of the most central problems in scientific research is the search for explanations of some aspect of nature for which empirical data is available. One seeks to identify the causal processes explaining the data, in the form of a model of the aspect of nature under study. Although traditional statistical approaches are excellent for finding statistical dependencies in a body of empirical data, they prove inadequate at finding the causal structure in the data. New graphical algorithmic approaches have been (...) proposed to automatically discover the causal structure in the data. Based on strong connections between graph theoretic properties and statistical aspects of causal influences, fundamental assumptions about the data can be used to infer a graphical structure, which is used to construct models describing the exact causal relations in the data. If the data contain correlated errors, latent variables must be introduced to explain the causal structure in the data. There is usually a large set of equivalent causal models with latent variables, representing competing alternatives, which entail similar statistical dependency relations. ;The central problem in this dissertation is the study of the theoretical limits to reliable causal inference. Given a body of statistical distribution information on a finite set of variables, we seek to characterize the set of all causal models satisfying this distribution. Current approaches only characterize the set of models which satisfy limited properties of this distribution, notably its relations of probabilistic conditional independence. Such models are semi-Markov equivalent. Some of these models might however not satisfy other properties of the distribution, which cannot be expressed as simple conditional independence relations on marginal distributions. We seek to go beyond semi-Markov equivalence. To do so, we first formally characterize the variation in graphical structure within a semi-Markov equivalence class of models. We then determine possible consequences of this variation as either experimentally testable features of models, or as testable features of marginal distributions. (shrink)

In this paper I offer an anti-Humean critique to Williamson and Russo’s approach to medical mechanisms. I focus on one of the specific claims made by Williamson and Russo, namely the claim that micro-structural ‘mechanisms’ provide evidence for the stability across populations of causal relationships ascertained at the (macro-) level of (test) populations. This claim is grounded in the epistemic account of causality developed by Williamson, an account which—while not relying exclusively on mechanistic evidence for justifying causal judgements—appeals nevertheless to (...) mechanisms, and rejects their anti-Humean interpretation in terms of capacities, powers, potencies, etc. By using (and expanding on) Cartwright’s basic critique against Humean mechanisms, I suggest that, in order to move beyond the level of plausibility, Williamson and Russo’s position is in need of a clarification as to the occurent reading of the components, functioning and interferences of mechanisms. Relatedly, as concerns Williamson’s epistemic account of causation, I argue that this account is in need of a more straightforward answer as to what truth-makers its causal claims should have. (shrink)

The present paper deals with the tools that can be used to represent causation and to reason about it and, specifically, with their diversity. It focuses on so-called “causal probabilities”—that is, probabilities of effects given one of their causes—and critically surveys a recent paper in which Joyce argues that the values of these probabilities do not depend on one’s conception of causation. I first establish a stronger independence claim: I show that the very definition of causal probabilities is independent of (...) one’s conception of causation. Second, I investigate whether causal probabilities indeed take the same values under their different possible definitions. (shrink)

An interventionist account of causation characterizes causal relations in terms of changes resulting from particular interventions. I provide a new example of a causal relation for which there does not exist an intervention satisfying the common interventionist standard. I consider adaptations that would save this standard and describe their implications for an interventionist account of causation. No adaptation preserves all the aspects that make the interventionist account appealing. Part of the fallout is a clearer account of the difficulties in characterizing (...) so-called “soft” interventions. (shrink)

This survey presents some of the main principles involved in discovering causal relations. They belong to a large array of possible assumptions and conditions about causal relations, whose various combinations limit the possibilities of acquiring causal knowledge in different ways. How much and in what detail the causal structure can be discovered from what kinds of data depends on the particular set of assumptions one is able to make. The assumptions considered here provide a starting point to explore further the (...) foundations of causal discovery procedures, and how they can be improved. (shrink)

Even though potential impacts of political and legal environments of business on ethical behavior of firms (EBOF) have been conceptually recognized, not much evidence (i.e., empirical work) has been produced to clarify their role. In this paper, using Bayesian causal maps (BCMs) methodology, relationships between legal and political environments of business and EBOF are investigated. The unique design of our study allows us to analyze these relationships based on the stages of development in 92 countries around the world. The EBOF (...) models structured through BCMs are used to explain how EBOF in a given country group are shaped by how managers perceive political, legislative, and protective environments of business in these countries. The results suggest that irregular payments and bribes are the most influential factors affecting managers’ perceptions of business ethics in relatively more advanced economies, whereas intellectual property protection is the most influential factor affecting managers’ perceptions of business ethics in less-advanced economies. The results also suggest that regardless of where the business is conducted in the world, judicial independence is the driving force behind managers’ perceptions of business ethics. In addition, the results of this study provide further support for scholars who argue that business ethics is likely to vary among countries based on their socio-economic factors. In addition to its managerial implications, the study provides directions for policy makers to improve the ethical conduct of businesses in their respective countries. (shrink)

Two kinds of causal inference rules which are widely used by social scientists are investigated. Two conceptions of causation also widely used are explicated — the INUS and probabilistic conceptions of causation. It is shown that the causal inference rules which link correlation, a kind of partial correlation, and a conception of causation areinvalid. It is concluded anew methodology is required for causal inference.

Recent approaches to causal modelling rely upon the causal Markov condition, which specifies which probability distributions are compatible with a directed acyclic graph. Further principles are required in order to choose among the large number of DAGs compatible with a given probability distribution. Here we present a principle that we call frugality. This principle tells one to choose the DAG with the fewest causal arrows. We argue that frugality has several desirable properties compared to the other principles that have been (...) suggested, including the well-known causal faithfulness condition. 1Introduction 2The Causal Markov Condition 3Faithfulness 4Frugality 4.1Basic independences and frugality 4.2General properties of directed acyclic graphs satisfying frugality 4.3Connection to minimality assumptions 5Frugality as a Parsimony Principle 6Conclusion Appendix. (shrink)

Much has been written on the role of causal notions and causal reasoning in the so-called 'special sciences' and in common sense. But does causal reasoning also play a role in physics? Mathias Frisch argues that, contrary to what influential philosophical arguments purport to show, the answer is yes. Time-asymmetric causal structures are as integral a part of the representational toolkit of physics as a theory's dynamical equations. Frisch develops his argument partly through a critique of anti-causal arguments and partly (...) through a detailed examination of actual examples of causal notions in physics, including causal principles invoked in linear response theory and in representations of radiation phenomena. Offering a new perspective on the nature of scientific theories and causal reasoning, this book will be of interest to professional philosophers, graduate students, and anyone interested in the role of causal thinking in science. (shrink)

According to a view widely held among philosophers of science, the notion of cause has no legitimate role to play in mature theories of physics. In this paper I investigate the role of what physicists themselves identify as causal principles in the derivation of dispersion relations. I argue that this case study constitutes a counterexample to the popular view and that causal principles can function as genuine factual constraints. IntroductionCausality and Dispersion RelationsNorton's SkepticismConclusion.

This monograph looks at causal nets from a philosophical point of view. The author shows that one can build a general philosophical theory of causation on the basis of the causal nets framework that can be fruitfully used to shed new light on philosophical issues. Coverage includes both a theoretical as well as application-oriented approach to the subject. The author first counters David Hume’s challenge about whether causation is something ontologically real. The idea behind this is that good metaphysical concepts (...) should behave analogously to good theoretical concepts in scientific theories. In the process, the author offers support for the theory of causal nets as indeed being a correct theory of causation. Next, the book offers an application-oriented approach to the subject. The author shows that causal nets can investigate philosophical issues related to causation. He does this by means of two exemplary applications. The first consists of an evaluation of Jim Woodward’s interventionist theory of causation. The second offers a contribution to the new mechanist debate. Introductory chapters outline all the formal basics required. This helps make the book useful for those who are not familiar with causal nets, but interested in causation or in tools for the investigation of philosophical issues related to causation. (shrink)

In this paper I argue that constitutive relevance relations in mechanisms behave like a special kind of causal relation in at least one important respect: Under suitable circumstances constitutive relevance relations produce the Markov factorization. Based on this observation one may wonder whether standard methods for causal discovery could be fruitfully applied to uncover constitutive relevance relations. This paper is intended as a first step into this new area of philosophical research. I investigate to what extent the PC algorithm, originally (...) developed for causal search, can be used for constitutive relevance discovery. I also discuss possible objections and certain limitations of a constitutive relevance discovery procedure based on PC. (shrink)

In this paper I reconstruct and evaluate the validity of two versions of causal exclusion arguments within the theory of causal Bayes nets. I argue that supervenience relations formally behave like causal relations. If this is correct, then it turns out that both versions of the exclusion argument are valid when assuming the causal Markov condition and the causal minimality condition. I also investigate some consequences for the recent discussion of causal exclusion arguments in the light of an interventionist theory (...) of causation such as Woodward's (2003) and discuss a possible objection to my causal Bayes net reconstruction. (shrink)

Casini, Illari, Russo, and Williamson (2011) suggest to model mechanisms by means of recursive Bayesian networks (RBNs) and Clarke, Leuridan, and Williamson (2014) extend their modelling approach to mechanisms featuring causal feedback. One of the main selling points of the RBN approach should be that it provides answers to questions concerning manipulation and control. In this paper I demonstrate that the method to compute the effects of interventions the authors mentioned endorse leads to absurd results under the additional assumption of (...) faithfulness, which can be expected to hold for many RBN models of mechanisms. (shrink)

In this article I tackle the question of how the hierarchical order of mechanisms can be represented within a causal graph framework. I illustrate an answer to this question proposed by Casini, Illari, Russo, and Williamson and provide an example that their formalism does not support two important features of nested mechanisms: (i) a mechanism’s submechanisms are typically causally interacting with other parts of said mechanism, and (ii) intervening in some of a mechanism’s parts should have some influence on the (...) phenomena the mechanism brings about. Finally, I sketch an alternative approach taking (i) and (ii) into account. (shrink)

In this paper I demonstrate that the causal structure of flagpole-like systems can be determined by application of causal graph theory. Additional information about the ordering of events in time or about how parameters of the systems of interest can be manipulated is not needed.

Modeling mechanisms is central to the biological sciences – for purposes of explanation, prediction, extrapolation, and manipulation. A closer look at the philosophical literature reveals that mechanisms are predominantly modeled in a purely qualitative way. That is, mechanistic models are conceived of as representing how certain entities and activities are spatially and temporally organized so that they bring about the behavior of the mechanism in question. Although this adequately characterizes how mechanisms are represented in biology textbooks, contemporary biological research practice (...) shows the need for quantitative, probabilistic models of mechanisms, too. In this paper we argue that the formal framework of causal graph theory is well-suited to provide us with models of biological mechanisms that incorporate quantitative and probabilistic information. On the ba-sis of an example from contemporary biological practice, namely feedback regulation of fatty acid biosynthesis in Brassica napus, we show that causal graph theoretical models can account for feedback as well as for the multi-level character of mechanisms. However, we do not claim that causal graph theoretical representations of mechanisms are advantageous in all respects and should replace common qualitative models. Rather, we endorse the more balanced view that causal graph theoretical models of mechanisms are useful for some purposes, while being insufficient for others. (shrink)

Mechanisms play an important role in many sciences when it comes to questions concerning explanation, prediction, and control. Answering such questions in a quantitative way requires a formal represention of mechanisms. Gebharter (2014) suggests to represent mechanisms by means of one or more causal arrows of an acyclic causal net. In this paper we show how this approach can be extended in such a way that it can also be fruitfully applied to mechanisms featuring causal feedback.